Cdexp2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Cdexp2 (CD45RC expression in CD8 T cells QTL 2) Rattus norvegicus

Symbol: Cdexp2
Name: CD45RC expression in CD8 T cells QTL 2
RGD ID: 1331772
Previously known as: Cec2
Trait: CD8-positive T cell quantity   (VT:0008077)    
Measurement Type: blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio   (CMO:0001990)    
LOD Score: 5.7
P Value: Not Available
Variance: 22.5
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,621,649 - 10,078,919RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0204,855,468 - 10,800,530RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0206,935,868 - 12,972,703RGDRnor5.0
RGSC_v3.4203,660,638 - 10,410,227RGDRGSC3.4
RGSC_v3.1203,660,865 - 10,410,454RGD
Cross Type: Not Available
Strains Crossed: LEW/Rj BN/Rj 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Vertebrate Trait

Rat Strain
BN/Rj  (IEA)
LEW/Rj  (IEA)

References

References - curated
1. Xystrakis E, etal., J Immunol 2004 Sep 1;173(5):3140-7.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2209Wdr46WD repeat domain 462049378454945796Rat
619978Csnk2bcasein kinase 2 beta2037003633705331Rat
619986Dnah8dynein, axonemal, heavy chain 82086929398946780Rat
2745Grm4glutamate metabotropic receptor 42054841725572821Rat
2413Cryaacrystallin, alpha A2097836059787351Rat
3618Vps52VPS52 subunit of GARP complex2049207154931685Rat
69328Cdkn1acyclin-dependent kinase inhibitor 1A2071491777159727Rat
2204Cfbcomplement factor B2039706433976510Rat
2840Hspa1bheat shock protein family A (Hsp70) member 1B2038551043859148Rat
3950Vars1valyl-tRNA synthetase 12038057743820468Rat
70496Mapk14mitogen activated protein kinase 142067496466810590Rat
3469RT1-BbRT1 class II, locus Bb2045965584602201Rat
3370Ppardperoxisome proliferator-activated receptor delta2062987856363970Rat
2934Itpr3inositol 1,4,5-trisphosphate receptor, type 32051369685202339Rat
2373Col11a2collagen type XI alpha 2 chain2047869294816598Rat
3887Tnxa-ps1tenascin XA, pseudogene 12040264714027826Rat
2702Glo1glyoxalase 12086636178681661Rat
2231C2complement C22039514743970376Rat
3595Rps18ribosomal protein S182049314274935538Rat
3611Rxrbretinoid X receptor beta2048168134823267Rat
3817Tap1transporter 1, ATP binding cassette subfamily B member2046562624666634Rat
3847Tff3trefoil factor 32091932599197969Rat
621024Rps10ribosomal protein S102056943135698922Rat
621227Daxxdeath-domain associated protein2049700904976145Rat
621020Ndufv3NADH:ubiquinone oxidoreductase subunit V32096124629621622Rat
2703Glp1rglucagon-like peptide 1 receptor2089720049010241Rat
3330Pim1Pim-1 proto-oncogene, serine/threonine kinase2075549217559174Rat
3819TapbpTAP binding protein2049569374966191Rat
2363Clpscolipase2066205296622709Rat
620709Tff2trefoil factor 22092157509219619Rat
61924Aif1allograft inflammatory factor 12036467843652670Rat
621090Syngap1synaptic Ras GTPase activating protein 12050263665056659Rat
3045Mapk13mitogen activated protein kinase 132068352776845500Rat
3427Psmb9proteasome 20S subunit beta 92046670444672512Rat
3163Neu1neuraminidase 12038974803901745Rat
620731Btnl2butyrophilin-like 22044909044502557Rat
620497Rpl10aribosomal protein L10A2063888006391358Rat
69407Sik1salt-inducible kinase 12099494079959036Rat
1303205Phf1PHD finger protein 12050177655022872Rat
1303227FkbplFKBP prolyl isomerase like2040998454101315Rat
628699Hmga1high mobility group AT-hook 12056110885618755Rat
1303158Hsd17b8hydroxysteroid (17-beta) dehydrogenase 82048267254828742Rat
1303262Btnl3butyrophilin-like 32044740564489024Rat
1303269Mpig6bmegakaryocyte and platelet inhibitory receptor G6b2037573963761024Rat
620773Apomapolipoprotein M2036909503693550Rat
3876Tnftumor necrosis factor2036220113624629Rat
620375Ppt2palmitoyl-protein thioesterase 22041125204132774Rat
3818Tap2transporter 2, ATP binding cassette subfamily B member2046363474650387Rat
2461Cyp21a1cytochrome P450, family 21, subfamily a, polypeptide 12040202174026923Rat
69258Ageradvanced glycosylation end product-specific receptor2041481504151361Rat
1303043Clic1chloride intracellular channel 12037648673773711Rat
1303050Zbtb9zinc finger and BTB domain containing 92050574335060459Rat
1303059Skiv2lSki2 like RNA helicase2039824943993261Rat
620328B3galt4Beta-1,3-galactosyltransferase 42049360894937664Rat
735065RGD735065similar to GI:13385412-like protein splice form I2073224837362054Rat
1302958Zbtb12zinc finger and BTB domain containing 122039376683940514Rat
620707Tff1trefoil factor 12092357369239597Rat
735180Ly6g5clymphocyte antigen 6 family member G5C2037094263713940Rat
1302999Ly6g6clymphocyte antigen 6 family member G6C2037536323757205Rat
1303006Pfdn6prefoldin subunit 62049459594947433Rat
1303008Msh5mutS homolog 52037738673793337Rat
3426Psmb8proteasome 20S subunit beta 82046521594655122Rat
621035Pde9aphosphodiesterase 9A2094698099562949Rat
1303306CutacutA divalent cation tolerance homolog2050229565024580Rat
3247Pacsin1protein kinase C and casein kinase substrate in neurons 12057181345768064Rat
1303333Ly6g6flymphocyte antigen 6 family member G6F2037373953742708Rat
620294Abcg1ATP binding cassette subfamily G member 12091266879182948Rat
1303332Cyp21a1-pscytochrome P450, family 21, subfamily a, polypeptide 1, pseudogene2042156374231737Rat
1303317Atf6bactivating transcription factor 6 beta2040909214098920Rat
1303325Nelfenegative elongation factor complex member E2039765123982389Rat
735096RT1-DMbRT1 class II, locus DMb2046931024700340Rat
1307801Cmtr1cap methyltransferase 12077227297782579Rat
1305003Pknox1PBX/knotted 1 homeobox 12096628669705030Rat
3576Ring1ring finger protein 12048301204833623Rat
3477RT1-DOaRT1 class II, locus DOa2047535874756590Rat
1306008Armc12armadillo repeat containing 122065878596598355Rat
620077Lst1leukocyte specific transcript 12036346803639731Rat
620005C4acomplement C4A2040057314020083Rat
1306917Uqcc2ubiquinol-cytochrome c reductase complex assembly factor 22052028375214541Rat
1303101Ly6g5blymphocyte antigen 6 family member G5B2037054643707830Rat
2287Cbscystathionine beta synthase2097080899732623Rat
1302985Rgl2ral guanine nucleotide dissociation stimulator-like 22049484954956774Rat
1303124Btnl7butyrophilin-like 72043010784313522Rat
1304880Scube3signal peptide, CUB domain and EGF like domain containing 32061991826231100Rat
735053RT1-DMaRT1 class II, locus DMa2047070284710432Rat
1305341Lemd2LEM domain nuclear envelope protein 22052823975296621Rat
1304760Pi16peptidase inhibitor 162073760737385386Rat
1303167Slc44a4solute carrier family 44, member 42039030993919215Rat
1307031Mdga1MAM domain containing glycosylphosphatidylinositol anchor 12079003277963471Rat
1303112Ly6g6elymphocyte antigen 6 family member G6E2037449993749867Rat
1303282Notch4notch receptor 42041603624184466Rat
1305626Taf11TATA-box binding protein associated factor 112059557745963593Rat
1308021Cpne5copine 52072067427289309Rat
1308035Rnf8ring finger protein 82076822587710448Rat
1359370Lhfpl5LHFPL tetraspan subfamily member 52066323626642534Rat
1309155Fkbp5FKBP prolyl isomerase 52064572076575404Rat
1359348Prrt1proline-rich transmembrane protein 12041179574121643Rat
1306868Brpf3bromodomain and PHD finger containing, 32068646846902760Rat
1303199E230034O05RikE230034O05Rik gene2036563063658463Rat
1359387Tcp11t-complex 112061262676138408Rat
621635Bak1BCL2-antagonist/killer 12051004805109669Rat
71064Bag6BAG cochaperone 62036759383690414Rat
1311583Tead3TEA domain transcription factor 32063920536411446Rat
1359359Sapcd1suppressor APC domain containing 12037939803795767Rat
1302972Ehmt2euchromatic histone lysine methyltransferase 22039196233936751Rat
1303038G4G4 protein2036936913696194Rat
1310183Nudt3nudix hydrolase 32056343455686950Rat
1309887Kctd20potassium channel tetramerization domain containing 202070158287032766Rat
1309262Mtch1mitochondrial carrier 12073899427413426Rat
1308898Slc26a8solute carrier family 26 member 82066862066749478Rat
1306239Zfp523zinc finger protein 5232062348846266512Rat
727881Ncr3natural cytotoxicity triggering receptor 32036372423643748Rat
1306685Pnpla1patatin-like phospholipase domain containing 12069184466951650Rat
1308587Slc37a1solute carrier family 37 member 12093605019433895Rat
1306975Btbd9BTB domain containing 92082863378645567Rat
1309840Fgd2FYVE, RhoGEF and PH domain containing 22074247957441603Rat
1310305Ubash3aubiquitin associated and SH3 domain containing, A2092914719334685Rat
1306065Snrpcsmall nuclear ribonucleoprotein polypeptide C2058884535906638Rat
1309233Srsf3serine and arginine rich splicing factor 32070919287101860Rat
1307712Rsph1radial spoke head component 12093419109360640Rat
1307113Zfand3zinc finger AN1-type containing 32080834078279617Rat
1308272Srpk1SRSF protein kinase 12066458096682448Rat
1307945Def6DEF6 guanine nucleotide exchange factor2062686146290030Rat
1309183Anks1aankyrin repeat and sterile alpha motif domain containing 1A2059636586117139Rat
1309455Stk38serine/threonine kinase 382070342457067803Rat
1307264Uhrf1bp1UHRF1 binding protein 12059102615954641Rat
1310135Tmprss3transmembrane serine protease 32092541029273808Rat
1303164Abhd16aabhydrolase domain containing 16A, phospholipase2037190893733952Rat
1303267Dxodecapping exoribonuclease2039933223995484Rat
1303072AA926063AA926063gene2049764624988984Rat
1359627Zbtb22zinc finger and BTB domain containing 222049663314969853Rat
1359729Ggnbp1gametogenetin binding protein 12051098495116185Rat
1303212Arrb2-psarrestin, beta 2, pseudogene2045238954524872Rat
1566039Umodl1uromodulin-like 12090277519087133Rat
1303162Ltblymphotoxin beta2036275363629381Rat
1564450Smim29small integral membrane protein 292056188455620922Rat
1561045FanceFA complementation group E2063694166386631Rat
1303137Vwa7von Willebrand factor A domain containing 72037949913805646Rat
1560150Rab44RAB44, member RAS oncogene family2071645767198473Rat
1303084Pbx2PBX homeobox 22041515004156425Rat
1303025Prrc2aproline-rich coiled-coil 2A2036583913674143Rat
1549706Egfl8EGF-like-domain, multiple 82041329304136024Rat
1359118Kifc1kinesin family member C12049988325017107Rat
1302955Ddah2dimethylarginine dimethylaminohydrolase 22037614603764718Rat
1359610RT1-A3RT1 class I, locus A32048475184851344Rat
1311062Tulp1TUB like protein 12064121706424312Rat
1303064Ly6g6dlymphocyte antigen 6 family member G6D2037495983752181Rat
1309119Ppil1peptidylprolyl isomerase like 12073022927322349Rat
1303324Brd2bromodomain containing 22047270784735389Rat
1303010Btnl8butyrophilin-like 82042667944280876Rat
1559829Ilruninflammation and lipid regulator with UBA-like and NBR1-like domains2058099315876231Rat
1303304Gpank1G patch domain and ankyrin repeats 12036976413700814Rat
1303014Gpsm3G-protein signaling modulator 32041571234158984Rat
1584104Ip6k3inositol hexakisphosphate kinase 32052238635245443Rat
1564987Tbc1d22bTBC1 domain family, member 22B2076190967675232Rat
1563561LOC499407LRRGT000972058088605840172Rat
1359601Stk19serine/threonine kinase 192039955904005117Rat
1565879Hsf2bpheat shock transcription factor 2 binding protein201003556210123059Rat
1584190U2af1U2 small nuclear RNA auxiliary factor 12097429049753840Rat
1585327LOC687478similar to RAN, member RAS oncogene family2075720087582115Rat
1590214Rpl13-ps1ribosomal protein L13, pseudogene 12038394603839702Rat
1588458Rnf5ring finger protein 52041455394147985Rat
1588459Stk19-psserine/threonine kinase 19 pseudogene2041941714196677Rat
1588460Btnl6-ps1butyrophilin-like 6, pseudogene 12043369024344877Rat
1585179Wdr4WD repeat domain 42095872059611434Rat
1585322Tmem217transmembrane protein 2172075841777619023Rat
1588733Ccdc167coiled-coil domain containing 1672077639277782090Rat
1594424Rps25-ps2ribosomal protein S25, pseudogene 22037353463735800Rat
1597190LOC288777similar to 40S ribosomal protein S15 (RIG protein)2078895097890004Rat
1595921RT1-HaRT1 class II, locus Ha2047606314770662Rat
1595922RT1-Db2RT1 class II, locus Db22045207234539724Rat
1595923RT1-A2RT1 class Ia, locus A22048709394910183Rat
1595924RT1-A1RT1 class Ia, locus A12049053094914593Rat
1595925Hspa1lheat shock protein family A (Hsp70) member 1 like2038488433855571Rat
1594398Sacm2l-ps2Sacm2l-ps2 pseudogene2048602074861343Rat
1594399Sacm2l-ps1Sacm2l-ps1 pseudogene2048614394861499Rat
1594400LOC224733l-2LOC224733l-2 pseudogene2048669864867269Rat
1594401LOC224733l-1LOC224733l-1 pseudogene2048937044901482Rat
1597063Tsbp1testis expressed basic protein 12044100024467284Rat
1594842SpdefSAM pointed domain containing ets transcription factor2057714345786793Rat
1593280Slc39a7solute carrier family 39 member 72048231664826538Rat
1593282RT1-Db1RT1 class II, locus Db12045486644558237Rat
1593283RT1-DaRT1 class II, locus Da2045134644518457Rat
1592336Clpsl2colipase-like 22066081286610951Rat
1591066Bnip5BCL2 interacting protein 52069577366975062Rat
1591983C4bcomplement C4B (Chido blood group)2041973714211684Rat
1591984Cdk2ap1-ps1Cdk2ap1-pseudogene 12048778724878222Rat
1591985Sec61-psSec61 pseudogene2049909544991292Rat
1591986Rps25-ps1ribosomal protein S25, pseudogene 12049971124997779Rat
1303287Agpat11-acylglycerol-3-phosphate O-acyltransferase 12041359554144880Rat
1595814RT1-DObRT1 class II, locus DOb2046195994625627Rat
1598536Lsm2LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated2038434673847217Rat
1598537Btnl5butyrophilin-like 52043667804376385Rat
1598538Btn3a2butyrophilin, subfamily 3, member A22043982544405681Rat
1595866RT1-Hb-ps1RT1 class II, locus Hb, pseudogene 12047755984779590Rat
1595867RT1-BaRT1 class II, locus Ba2045751344579727Rat
1624210RGD1624210similar to butyrophilin-like 72042313504244825Rat
1642907Mlnmotilin2053042495308948Rat
2321641LOC100364116ribosomal protein S20-like2078758477876355Rat
2325545Mir219a1microRNA 219a-12048296874829796Rat
6501785LOC100909773eukaryotic translation initiation factor 3 subunit I-like2088488258851018Rat
6497687LOC100910615allatostatin-A receptor-like2072040947208620Rat
7536082LOC102554184uncharacterized LOC1025541842046044444607609Rat
7662094LOC102552617uncharacterized LOC1025526172061361166142709Rat
7613542LOC102547155uncharacterized LOC1025471552072915877295559Rat
7558298LOC102551791uncharacterized LOC1025517912053365675342262Rat
7661101LOC102553878uncharacterized LOC1025538782039398263944890Rat
7570468LOC102548069uncharacterized LOC1025480692086443108649170Rat
7574070LOC102551729uncharacterized LOC1025517292053270865330154Rat
7707260LOC102549726uncharacterized LOC1025497262038765633879281Rat
7683538LOC102547357uncharacterized LOC1025473572074946257497865Rat
9151994LOC103694394uncharacterized LOC1036943942095843189587414Rat
9319304LOC103694391uncharacterized LOC1036943912058643265868306Rat
9279284LOC103694395uncharacterized LOC1036943952098420979846059Rat
9264061LOC10369439340S ribosomal protein S12 pseudogene2087673058768818Rat
11436027LOC108349032uncharacterized LOC1083490322038206733830868Rat
11436627LOC108349043uncharacterized LOC1083490432075006297504106Rat
11371075LOC108349047uncharacterized LOC1083490472099591549968781Rat
11425585LOC108348108heat shock 70 kDa protein 1A2038707653873221Rat
11396817LOC108353257uncharacterized LOC1083532572052713225274062Rat
11477629LOC108349035uncharacterized LOC1083490352044758274479937Rat
11481265LOC108349039uncharacterized LOC1083490392061717066177179Rat
11496771Smim40small integral membrane protein 402049763044989078Rat
41323168LOC120098934uncharacterized LOC1200989342073660467369461Rat
41087994LOC120099070small nucleolar RNA SNORA442092480429248157Rat
41249976LOC120098971uncharacterized LOC1200989712066810606711596Rat
41285711LOC120098975uncharacterized LOC1200989752079268007930511Rat
41359868LOC120098895extensin-like2047150494726873Rat
41092070LOC120098875uncharacterized LOC1200988752060588956083372Rat
41118814LOC120098982uncharacterized LOC1200989822088138188815102Rat
41363078LOC120098972uncharacterized LOC1200989722079862877987419Rat
41363335NEWGENE_40934091transfer RNA alanine (anticodon AGC)2049960874996159Rat
41213255LOC120098965uncharacterized LOC1200989652052967725304377Rat
41154350LOC120098983uncharacterized LOC1200989832088289418832801Rat
41154967LOC120098963uncharacterized LOC1200989632051928055201154Rat
41124549LOC120098874uncharacterized LOC1200988742061011576106044Rat
41267553NEWGENE_6576114transfer RNA threonine (anticodon AGU)2073152687315348Rat
41345822LOC120098916uncharacterized LOC1200989162094601449466526Rat
41370127LOC120098856uncharacterized LOC1200988562054243755429086Rat
41396061LOC120099048U6 spliceosomal RNA2037745723774677Rat
41193729LOC120098949uncharacterized LOC1200989492073797837383606Rat
41217074LOC120098812uncharacterized LOC1200988122071436727149117Rat
41127036NEWGENE_40926764transfer RNA proline (anticodon AGG)2063706596370739Rat
41184908LOC120098896uncharacterized LOC1200988962048656984869225Rat
41270226LOC120098851uncharacterized LOC1200988512099740729987401Rat
41072487LOC120098979uncharacterized LOC1200989792039009763906605Rat
41104675LOC120099062small nucleolar RNA SNORD482038772833877346Rat
41106045LOC120099050U6 spliceosomal RNA2049281454928241Rat
41131172LOC120098852uncharacterized LOC120098852201000515610006928Rat
41402059LOC120099031small Cajal body-specific RNA 142071064597106619Rat
41164042LOC120098952uncharacterized LOC1200989522080822068083106Rat
41320458LOC120098863uncharacterized LOC1200988632069272536931705Rat
41201546LOC120098818uncharacterized LOC1200988182053704375382107Rat
40927733LOC120098860uncharacterized LOC1200988602061608136170387Rat
40982220LOC120098951uncharacterized LOC1200989512084279888432988Rat
40931161LOC120098980uncharacterized LOC1200989802093712639373758Rat
40931377LOC120098970uncharacterized LOC1200989702067128706722477Rat
40958994NEWGENE_40934091transfer RNA alanine (anticodon AGC)2065623546562428Rat
40933832LOC120099076small nucleolar RNA SNORA482090993829099524Rat
41008588LOC120098864uncharacterized LOC1200988642069372636938674Rat
40991350LOC120098978uncharacterized LOC1200989782040846124087472Rat
41315732LOC120098961uncharacterized LOC1200989612063593766367170Rat
41220558LOC120098915uncharacterized LOC1200989152090929849096813Rat
41297073LOC120098861uncharacterized LOC1200988612061499726160196Rat
41318103LOC120099072small nucleolar RNA SNORA382036609003661033Rat
41031683LOC120098917uncharacterized LOC1200989172080079798017409Rat
41315246LOC120098897uncharacterized LOC1200988972048430814847572Rat
41223599LOC120098835uncharacterized LOC1200988352092888149292762Rat
41062511LOC120099061small nucleolar RNA SNORD522038784123878477Rat
41016453LOC120098811uncharacterized LOC1200988112050991415106643Rat
41017433LOC120099029small nucleolar RNA SNORA262059164825916607Rat
41018858LOC120098906uncharacterized LOC1200989062053516275352349Rat
41067580LOC120099051U6 spliceosomal RNA2088506188850719Rat
41239998LOC120098859uncharacterized LOC1200988592055870005602500Rat
41074342LOC120099066small nucleolar RNA SNORA36 family2096282379628367Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10654D20Wox72692090086529008921Ratregion
34260D20Mgh51182090397199039825Ratregion
34280D20Mgh41062066915966691706Ratregion
34749D20UW11522036216493621791Ratregion
34749D20UW11522036216493621791Ratregion
11428D20Wox31152036216563621771Ratregion
11428D20Wox31152036216563621771Ratregion
37594D20Rat411952046066074606812Ratregion
37632D20Rat491282080424108042534Ratregion
37872D20Rat31225201007869610078919Ratregion
34908D20Rat21482092434299243559Ratregion
38324D20Rat321602048391514839323Ratregion
40684D20Rat501102080361418036249Ratregion
38826D20Rat421412044596984459841Ratregion
42102D20Arb71652075226257522794Ratregion
41466D20Rat451252053045755304690Ratregion
43141D20Rat662022046754394675614Ratregion
45669D20Got41742037758303776003Ratregion
45672D20Got62432090009049001147Ratregion
45673D20Rat74219201007869610078911Ratregion
66471D20Uia11402044487204448860Ratregion
66472D20Uia21692062321726232338Ratregion
1576369D20Ztm21592051064685106627Ratregion
1576378D20Ztm11742036215993621773Ratregion
1576378D20Ztm11742036215993621773Ratregion
1630310D20Got1021622041463734146535Ratregion
1631989D20Wox131662065149776515143Ratregion
1626730D20Rhw111862046093814609567Ratregion
1626764D20Rhw91812046044034604582Ratregion
1626768D20Rhw131522052205125220664Ratregion
1626778D20Rhw101662046066464606812Ratregion
1627886D20Got1052152075302777530493Ratregion
1628583D20Cebr12062822406282558Ratregion
1628583D20Cebr12062822406283195Ratregion
1638634D20Got1281792065911346591313Ratregion
1639768D20Wox122032038688473869052Ratregion
1634943D20Cebr21232058029485803071Ratregion
1635374D20Got1192382064620366462274Ratregion
1636007D20Got1041252078186597818784Ratregion
1637010D20Got1031442055879725588116Ratregion
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5061244BI2935612002083390218339221Ratregion
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5087518PMC26794P36722036230583623730Ratregion
5087530PMC275467P44792052011935201672Ratregion
5083787AI5995271982051291445129342Ratregion
5088853AU0488091972046094154609612Ratregion
5081549AW4338361522093419539342105Ratregion
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5084500AI2352232242048521044852328Ratregion
5084508AI409737148201000669310006841Ratregion
5084572AI0139412282040870984087326Ratregion
5084720AI0082581242050565025056626Ratregion
5084332AI176591952091849869185081Ratregion
5087626PMC85267P24202071498347150254Ratregion
5088475AU0485911162075756357575751Ratregion
5080926RH1418631892072081737208362Ratregion
5080934RH1418682082049225914922798Ratregion
5081384AI4539612092041482174148512Ratregion
5086048AW5294181672060756186075785Ratregion
5081234RH1420432062036937483693954Ratregion
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5086553BM3858171882048243484824536Ratregion
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5081613BE1176321652071008487101013Ratregion
5085645BI2767031572063863916386548Ratregion
5085772BF4167341212056322905632411Ratregion
5084022AI2324781342049214324921566Ratregion
5503258UniSTS:2376241832049663694966552Ratregion
5503262UniSTS:2376262382048168724817110Ratregion
5503354CGCb741762047316994731873Ratregion
5503354CGCb741762047316994731873Ratregion
5503520H2-Ke610272048273294828356Ratregion
5503522UniSTS:46341511942050098835011077Ratregion
5503524Slc39a712342048251084826342Ratregion
5503528UniSTS:46343714872049247334926220Ratregion
5507585Aif102036510593651818Ratregion
5503506Pim14922075553097555801Ratregion
5503560UniSTS:46395902036228633623794Ratregion
5503560UniSTS:46395902036228633623794Ratregion
5503648UniSTS:4654675612041616764162237Ratregion
5503827MARC_45796-45797:1102976080:113122063583066359618Ratregion
5503833MARC_45800-45801:1102973340:202063608796361416Ratregion
5504143UniSTS:2591684722090772909077762Ratregion
5504194Rsph16412093503979351038Ratregion
5504578PMC307617P22172071574527157669Ratregion
5505913UniSTS:49603314182063595076360925Ratregion
5506310Tap214532046374924638945Ratregion
5506310Tap214532046374924638945Ratregion
5506169UniSTS:4985067482037451873745935Ratregion
5506231Clic11552037650253765180Ratregion
5507243AW539211922082792038279295Ratregion
5499635MARC_5887-5888:991939775:17322041545724155304Ratregion
5500011UniSTS:2361251432050112135011477Ratregion
5499619MARC_3347-3348:991937077:11952037040623705128Ratregion
5500469RH12686602036798163680353Ratregion
5503264UniSTS:2376302142040999204100134Ratregion
5501067PMC133764P31582075551607555318Ratregion
5501069PMC133764P41372075551817555318Ratregion
5501037PMC125030P13812071573767157757Ratregion
5501047PMC126110P12042071575817158367Ratregion
5501107PMC137182P91052063607786360883Ratregion
5501143PMC149170P14462071574077158435Ratregion
5500999PMC114802P23802071573777157757Ratregion
5501516RH358712462036778353678288Ratregion
5501760MARC_11957-11958:1003854518:15572036629913663548Ratregion
5501954MARC_20758-20759:1025103834:102095568539557699Ratregion
5506624SFRS3_18756122071003307100942Ratregion
5502146MARC_5857-5858:997299374:102036512403651828Ratregion
5502150MARC_6301-6302:997299518:102048177794818347Ratregion
5502124MARC_5045-5046:996690083:15632036726193673182Ratregion
5502132MARC_5411-5412:996690356:11742036763813676960Ratregion
5502299RH1243321632041324554132618Ratregion
Position Markers

Flank 1: (D20UW1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,621,649 - 3,621,791 (-)MAPPER
mRatBN7.2203,621,649 - 3,621,791 (+)MAPPER
Rnor_6.0205,192,220 - 5,192,361NCBI
Rnor_6.0204,855,468 - 4,855,609NCBI
Rnor_5.0206,935,868 - 6,936,009UniSTS
RGSC_v3.4203,660,638 - 3,660,780RGD
RGSC_v3.4203,660,639 - 3,660,780UniSTS
RGSC_v3.1203,660,865 - 3,661,007RGD
Celera204,403,698 - 4,403,839UniSTS
RH 3.4 Map2044.5RGD
RH 3.4 Map2044.5UniSTS
RH 2.0 Map2028.3RGD
SHRSP x BN Map200.0UniSTS
SHRSP x BN Map200.0RGD
FHH x ACI Map200.16RGD
Cytogenetic Map20p12UniSTS
Peak: (D20Rat41)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,606,607 - 4,606,812 (-)MAPPER
Rnor_6.0204,039,113 - 4,039,317NCBI
Rnor_5.0206,118,659 - 6,118,863UniSTS
RGSC_v3.4204,740,609 - 4,740,814RGD
RGSC_v3.4204,740,610 - 4,740,814UniSTS
RGSC_v3.1204,740,837 - 4,741,041RGD
Celera206,207,604 - 6,207,808UniSTS
RH 3.4 Map2067.2UniSTS
RH 3.4 Map2067.2RGD
RH 2.0 Map2074.2RGD
SHRSP x BN Map200.0RGD
FHH x ACI Map200.0RGD
Flank 2: (D20Rat31)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22010,078,696 - 10,078,919 (+)MAPPER
Rnor_6.02010,800,308 - 10,800,530NCBI
Rnor_5.02012,972,481 - 12,972,703UniSTS
RGSC_v3.42010,410,005 - 10,410,227UniSTS
RGSC_v3.42010,410,004 - 10,410,227RGD
RGSC_v3.12010,410,232 - 10,410,454RGD
Celera2011,589,058 - 11,589,280UniSTS
RH 3.4 Map20152.9RGD
RH 3.4 Map20152.9UniSTS
RH 2.0 Map20147.9RGD
SHRSP x BN Map2011.54RGD
FHH x ACI Map204.6798RGD
Cytogenetic Map20p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013624629Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2036216564606812Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
7175099Tcs2T cell selection QTL 2T cell selectionexpression2045025574693102Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2046066076691706Rat
4889857Pur27Proteinuria QTL 2712.20.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
7175096Tcs1T cell selection QTL 1T cell selectionexpression2047270785024580Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20669170617489458Rat
1581577Pur15Proteinuria QTL 154.380.0002total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)20804241017617956Rat
4889870Pur30Proteinuria QTL 30190.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
631265Iresp1Immunoglobin response QTL18.3blood anti-double stranded DNA antibody amount (VT:0004762)serum anti-DNA antibody level (CMO:0001533)20903971913461775Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cdexp2


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Cdexp2  CD45RC expression in CD8 T cells QTL 2  Cec2    Symbol updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details Linkage analysis was performed using MAPMAKER/QTL 1.1 software. 1302824