Bw111 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw111 (Body weight QTL 111) Rattus norvegicus

Symbol: Bw111
Name: Body weight QTL 111
RGD ID: 6893685
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: 2.7
P Value: 0.004
Variance: 12.2
Inheritance Type: recessive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8201 - 32,578,510RGD_MAPPER_PIPELINE
mRatBN7.2201 - 32,578,807RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0201 - 33,300,419RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0201 - 35,472,592RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4201 - 32,910,115RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: SS/Jr SHR/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw111Rathypertension  IAGP 61516 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw111Ratincreased body weight  IDA 61516 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw111Ratbody weight  IDA 61516 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw111Ratcontrolled sodium content diet  IDA 61516 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw111Ratbody weighing method  IDA 61516 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw111RatSHR/NHsd  IEA 61516 RGD 
Bw111RatSS/Jr  IEA 61516 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw111Ratbody mass  IDA 61516 RGD 


#
Reference Title
Reference Citation
1. Blood pressure QTL that differentiate dahl salt-sensitive and spontaneously hypertensive rats Garrett MR, etal., Physiol Genomics 2000 Jun 29;3(1):33-8.


1 to 20 of 1014 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
40950750LOC120098879uncharacterized LOC120098879203208238315Rat
1584276Or2n1el1olfactory receptor family 2 subfamily N member 1E like 1205801472100Rat
41305554Slc37a3-ps1solute carrier family 37, member 3, pseudogene 1207845279685Rat
41224295Cbwd1-ps1COBW domain containing 1, pseudogene 1208099387517Rat
620629Tmlhetrimethyllysine hydroxylase, epsilon2091234138942Rat
41021639Dnd1-ps3DND microRNA-mediated repression inhibitor 1, pseudogene 3209871299682Rat
1306580Clic2chloride intracellular channel 220149337164375Rat
2324146Kmt5c-ps1lysine methyltransferase 5C, pseudogene 120168241172655Rat
1332634Or2n1eolfactory receptor family 2 subfamily N member 1E20175987176925Rat
1333389Or2j5-ps1olfactory receptor family 2 subfamily J member 5, pseudogene 120221259221687Rat
1333994Or2n1holfactory receptor family 2 subfamily N member 1H20240423241361Rat
1333177Or2j3olfactory receptor family 2 subfamily J member 320253033253971Rat
1333488Or2n1f-ps1olfactory receptor family 2 subfamily N member 1F, pseudogene 120262016262955Rat
1332701Or2n1golfactory receptor family 2 subfamily N member 1G20275731276669Rat
1333006Or2h16-ps1olfactory receptor family 2 subfamily H member 16, pseudogene 120281975282791Rat
1333465Olr1675olfactory receptor 167520291840292778Rat
1332856Olr1676-psolfactory receptor pseudogene 167620297043297982Rat
41276637LOC120098956olfactory receptor 2B11-like20311678312616Rat
1332652Or2n1nolfactory receptor family 2 subfamily N member 1N20326970329747Rat
1333696Or2n1lolfactory receptor family 2 subfamily N member 1L20340574341512Rat

1 to 20 of 1014 rows
1 to 20 of 957 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
5060992BF38967222020108897109117Ratregion
5026276RH13159219020142226142416Ratregion
5046162RH13159420620146218146424Ratregion
1639882D20Got10016020157750157910Ratregion
11203D20Rhw115220157756157908Ratregion
1632509D20Got11016120196658196819Ratregion
5503210ha2028020235421236610Ratregion
1626752D20Rhw216820502515502683Ratregion
1626772D20Rhw315220508660508812Ratregion
5505504D20S83572720631297632024Ratregion
503606110T19720657094657291Ratregion
5052420AU04204616520705464705629Ratregion
5505241Olfr12452020706758707278Ratregion
1637381D20Wox1816020739257739417Ratregion
1628504D20Got12413920998713998852Ratregion
5064976BI3029541712010503521050521Ratregion
1626762D20Rhw41702013310461331216Ratregion
1626748D20Rhw51512013444401344591Ratregion
1626732D20Rhw61712013698611370034Ratregion
1626766D20Rhw71832013765101376691Ratregion
1 to 20 of 957 rows

Peak: (D20Rat31)
Rat AssemblyChrPosition (strand)Source
GRCr82010,078,399 - 10,078,622 (+)Marker Load Pipeline
mRatBN7.22010,078,696 - 10,078,919 (+)MAPPER
Rnor_6.02010,800,308 - 10,800,530NCBI
Rnor_5.02012,972,481 - 12,972,703UniSTS
RGSC_v3.42010,410,005 - 10,410,227UniSTS
RGSC_v3.42010,410,004 - 10,410,227RGD
RGSC_v3.12010,410,232 - 10,410,454RGD
Celera2011,589,058 - 11,589,280UniSTS
RH 3.4 Map20152.9RGD
RH 3.4 Map20152.9UniSTS
RH 2.0 Map20147.9RGD
SHRSP x BN Map2011.54RGD
FHH x ACI Map204.6798RGD
Cytogenetic Map20p12UniSTS


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20669170617489458Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat

1 to 10 of 45 rows


Note Type Note Reference
qtl_general number of animals used: 108 male F2 rats 61516
qtl_general measurement method: animals were weaned at 30 days of age and kept on 8% NaCl diet and systolic blood pressure was measured after 4 weeks; after the final measurement rats were killed and body weight was measured 61516
qtl_general software used: Mapmaker/QTL 61516