RT1-A1 (RT1 class Ia, locus A1) - Rat Genome Database

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Gene: RT1-A1 (RT1 class Ia, locus A1) Rattus norvegicus
Analyze
Symbol: RT1-A1
Name: RT1 class Ia, locus A1
RGD ID: 1595924
Description: Enables beta-2-microglobulin binding activity and peptide binding activity. Involved in T cell tolerance induction; negative regulation of natural killer cell mediated cytotoxicity; and positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains. Predicted to be located in Golgi apparatus; cell surface; and endoplasmic reticulum. Predicted to be part of MHC class I protein complex. Predicted to be active in external side of plasma membrane and extracellular space. Human ortholog(s) of this gene implicated in several diseases, including asthma (multiple); autoimmune disease (multiple); eye disease (multiple); human immunodeficiency virus infectious disease (multiple); and inner ear disease (multiple). Orthologous to several human genes including HLA-B (major histocompatibility complex, class I, B); HLA-C (major histocompatibility complex, class I, C); and HLA-E (major histocompatibility complex, class I, E); PARTICIPATES IN allograft rejection pathway; antigen processing and presentation pathway; autoimmune thyroiditis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; ammonium acetate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: RT1 class I gene (A-1); RT1 class Ia, A1n; RT1 class Ia, locus A (A1); RT1 class Ia, locus A1 (mapped); RT1-A1_mapped; RT1-A1n; RT1.A1(N); RT1A-1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2204,905,309 - 4,914,593 (+)NCBImRatBN7.2
Rnor_6.0205,414,463 - 5,418,012 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,351,605 - 5,421,098 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,474,607 - 7,478,550 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,056,763 - 5,060,280 (+)NCBIRGSC3.4rn4RGSC3.4
Celera206,489,030 - 6,492,547 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
abacavir allergy  (ISO)
Acute Anterior Uveitis  (ISO)
acute retinal necrosis syndrome  (ISO)
allergic asthma  (ISO)
allergic disease  (ISO)
alopecia  (ISO)
ankylosing spondylitis  (ISO)
ankylosing spondylitis 1  (ISO)
anterior uveitis  (ISO)
asthma  (ISO)
Behcet's disease  (ISO)
birdshot chorioretinopathy  (ISO)
cervical cancer  (ISO)
Chemical and Drug Induced Liver Injury  (ISO)
Choroidal Neovascularization  (ISO)
colitis  (ISO)
COVID-19  (ISO)
cytomegalovirus retinitis  (ISO)
Delayed Hypersensitivity  (IDA)
dermatitis  (ISO)
dermatomyositis  (ISO)
diabetic retinopathy  (ISO)
Diffuse Panbronchiolitis  (ISO)
drug allergy  (ISO)
Drug Eruptions  (ISO)
Drug-Related Side Effects and Adverse Reactions  (ISO)
Eales Disease  (ISO)
erythema nodosum  (ISO)
exanthem  (ISO)
Experimental Autoimmune Uveitis  (ISO)
Genetic Predisposition to Disease  (ISO)
Graft vs Host Disease  (IDA)
Graves' disease  (ISO)
Hearing Loss, Unilateral Sensorineural  (ISO)
high grade glioma  (ISO)
human immunodeficiency virus infectious disease  (ISO)
megacolon  (ISO)
Meniere's disease  (ISO)
mitral valve prolapse  (ISO)
myasthenia gravis  (ISO)
Nasal Polyps  (ISO)
nephritis  (ISO)
occupational asthma  (ISO)
otosclerosis  (ISO)
Presumed Ocular Histoplasmosis Syndrome  (ISO)
proteinuria  (ISO)
reactive arthritis  (ISO)
retinal vasculitis  (ISO)
retinopathy of prematurity  (ISO)
sarcoidosis  (ISO)
sensorineural hearing loss  (ISO)
severe acute respiratory syndrome  (ISO)
Spondylarthritis  (ISO)
spondyloarthropathy  (ISO)
Stevens-Johnson syndrome  (ISO)
synovitis  (ISO)
thrombophlebitis  (ISO)
Thyrotoxic Periodic Paralysis  (ISO)
trachoma  (ISO)
Transplant Rejection  (ISO)
Trichiasis  (ISO)
tuberculosis  (ISO)
uveal melanoma  (ISO)
uveitis  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
abacavir  (ISO)
acetamide  (EXP)
Aflatoxin G1  (ISO)
all-trans-retinoic acid  (ISO)
allopurinol  (ISO)
ammonium acetate  (EXP)
ammonium chloride  (EXP)
amoxicillin  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
brinzolamide  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cefadroxil  (ISO)
chromium(6+)  (ISO)
chrysene  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
Cuprizon  (EXP)
D-penicillamine  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
diltiazem  (ISO)
dimethylarsinic acid  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
doxycycline  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
erythromycin A  (ISO)
etoposide  (ISO)
eugenol  (ISO)
flucloxacillin  (ISO)
folic acid  (ISO)
furosemide  (ISO)
genistein  (ISO)
gentamycin  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
hydralazine  (ISO)
ifosfamide  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
lamotrigine  (ISO)
lipopolysaccharide  (ISO)
lithocholic acid  (ISO)
lomefloxacin  (ISO)
methylarsonic acid  (ISO)
methylmercury chloride  (ISO)
metolazone  (ISO)
minocycline  (ISO)
N-nitrosodiethylamine  (EXP)
nickel sulfate  (ISO)
ochratoxin A  (ISO)
omeprazole  (ISO)
oxcarbazepine  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (ISO)
piroxicam  (ISO)
propanal  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
tetraphene  (ISO)
thimerosal  (ISO)
Tiopronin  (ISO)
trichostatin A  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Additional References at PubMed
PMID:2420472   PMID:2784569   PMID:8046333   PMID:8617941   PMID:8881041   PMID:9443915   PMID:9754572   PMID:11685465   PMID:15004152   PMID:15045471   PMID:15056662   PMID:18502829  
PMID:20008523   PMID:20946353   PMID:21841133   PMID:22031944   PMID:22321387   PMID:22562814   PMID:23646949   PMID:24586191   PMID:29531166  


Genomics

Comparative Map Data
RT1-A1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2204,905,309 - 4,914,593 (+)NCBImRatBN7.2
Rnor_6.0205,414,463 - 5,418,012 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,351,605 - 5,421,098 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,474,607 - 7,478,550 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,056,763 - 5,060,280 (+)NCBIRGSC3.4rn4RGSC3.4
Celera206,489,030 - 6,492,547 (+)NCBICelera
Cytogenetic Map20p12NCBI
HLA-B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,353,875 - 31,357,179 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl631,353,872 - 31,367,067 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,321,652 - 31,324,956 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,429,628 - 31,432,914 (-)NCBINCBI36hg18NCBI36
Build 34631,429,629 - 31,432,914NCBI
Celera632,921,554 - 32,924,897 (-)NCBI
Cytogenetic Map6p21.33NCBI
HuRef631,112,051 - 31,115,393 (-)NCBIHuRef
CHM1_1631,323,557 - 31,326,920 (-)NCBICHM1_1
T2T-CHM13v2.0631,209,767 - 31,213,072 (-)NCBI
H2-M2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,791,742 - 37,794,445 (-)NCBIGRCm39mm39
GRCm39 Ensembl1737,791,742 - 37,794,443 (-)Ensembl
GRCm381737,480,851 - 37,483,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,480,851 - 37,483,552 (-)EnsemblGRCm38mm10GRCm38
MGSCv371737,617,796 - 37,620,474 (-)NCBIGRCm37mm9NCBIm37
MGSCv361737,088,904 - 37,091,582 (-)NCBImm8
Celera1740,921,406 - 40,924,072 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
LOC100982859
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1631,996,784 - 32,000,234 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,997,381 - 32,000,067 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,106,562 - 31,109,933 (-)NCBIMhudiblu_PPA_v0panPan3
DLA88
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112892,442 - 895,691 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12892,388 - 1,021,690 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,029,303 - 1,032,552 (-)NCBI
ROS_Cfam_1.0121,038,021 - 1,041,272 (-)NCBI
ROS_Cfam_1.0 Ensembl121,037,032 - 1,166,908 (-)Ensembl
UMICH_Zoey_3.112896,360 - 899,577 (-)NCBI
UNSW_CanFamBas_1.012964,994 - 968,367 (-)NCBI
UU_Cfam_GSD_1.0121,031,738 - 1,034,937 (-)NCBI

Position Markers
H2-D1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,908,501 - 4,908,657 (+)MAPPERmRatBN7.2
Rnor_6.0205,417,603 - 5,417,758NCBIRnor6.0
Rnor_5.0207,477,747 - 7,477,902UniSTSRnor5.0
RGSC_v3.4205,059,871 - 5,060,026UniSTSRGSC3.4
Celera206,492,138 - 6,492,293UniSTS
Celera20685,255 - 685,411UniSTS
Celera205,715,355 - 5,715,511UniSTS
Cytogenetic Map20p12UniSTS
H2-Q6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,905,718 - 4,906,260 (+)MAPPERmRatBN7.2
Rnor_6.0205,414,820 - 5,415,361NCBIRnor6.0
Rnor_5.0207,474,964 - 7,475,505UniSTSRnor5.0
RGSC_v3.4205,057,088 - 5,057,629UniSTSRGSC3.4
RGSC_v3.4204,998,963 - 4,999,507UniSTSRGSC3.4
Celera206,489,355 - 6,489,896UniSTS
Celera206,447,813 - 6,448,357UniSTS
Cytogenetic Map20p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2046066076691706Rat
4889857Pur27Proteinuria QTL 2712.20.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
7175096Tcs1T cell selection QTL 1T cell selectionexpression2047270785024580Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:408
Count of miRNA genes:220
Interacting mature miRNAs:255
Transcripts:ENSRNOT00000041590
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 15 49 33 19 33 3 7 17 23 11
Low 26 8 8 8 8 8 63 16 17 8
Below cutoff 2 4 2 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001008827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BX883042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC222922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG963095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U50448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X90375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000041590   ⟹   ENSRNOP00000039088
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,351,621 - 5,418,012 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078972   ⟹   ENSRNOP00000075633
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,353,443 - 3,358,533 (-)Ensembl
Rnor_6.0 Ensembl205,414,448 - 5,418,015 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080900   ⟹   ENSRNOP00000071804
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,350,937 - 3,380,362 (-)Ensembl
Rnor_6.0 Ensembl205,414,457 - 5,418,019 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081240   ⟹   ENSRNOP00000074602
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,351,621 - 5,418,013 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082538   ⟹   ENSRNOP00000072208
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,351,621 - 5,421,098 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089306   ⟹   ENSRNOP00000073206
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,351,605 - 5,418,011 (+)Ensembl
RefSeq Acc Id: NM_001008827   ⟹   NP_001008827
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,905,394 - 4,908,911 (+)NCBI
Rnor_6.0205,414,495 - 5,418,012 (+)NCBI
Rnor_5.0207,474,607 - 7,478,550 (+)NCBI
RGSC_v3.4205,056,763 - 5,060,280 (+)RGD
Celera206,489,030 - 6,492,547 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256099   ⟹   XP_006256161
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,905,309 - 4,908,914 (+)NCBI
Rnor_6.0205,414,463 - 5,418,012 (+)NCBI
Rnor_5.0207,474,607 - 7,478,550 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098424   ⟹   XP_038954352
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,905,309 - 4,908,374 (+)NCBI
RefSeq Acc Id: XM_039098425   ⟹   XP_038954353
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,905,309 - 4,914,593 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001008827   ⟸   NM_001008827
- Peptide Label: precursor
- UniProtKB: Q6MGB9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256161   ⟸   XM_006256099
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000072208   ⟸   ENSRNOT00000082538
RefSeq Acc Id: ENSRNOP00000039088   ⟸   ENSRNOT00000041590
RefSeq Acc Id: ENSRNOP00000073206   ⟸   ENSRNOT00000089306
RefSeq Acc Id: ENSRNOP00000071804   ⟸   ENSRNOT00000080900
RefSeq Acc Id: ENSRNOP00000074602   ⟸   ENSRNOT00000081240
RefSeq Acc Id: ENSRNOP00000075633   ⟸   ENSRNOT00000078972
RefSeq Acc Id: XP_038954353   ⟸   XM_039098425
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038954352   ⟸   XM_039098424
- Peptide Label: isoform X1
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K1E1-F1-model_v2 AlphaFold A0A0G2K1E1 1-382 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701407
Promoter ID:EPDNEW_R11931
Type:single initiation site
Name:RT1-A1_1
Description:RT1 class Ia, locus A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,414,475 - 5,414,535EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 5414502 5414503 C A snv ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), PVG/Seac (2019), FHH/EurMcwi (2019), LH/MavRrrcAek (2020), M520/N (2020), MWF/Hsd (2019), DA/OlaHsd (2019)
20 5414505 5414506 T A snv LEXF4/Stm (2020), M520/NRrrcMcwi (2019)
20 5414511 5414512 C A snv SS/JrHsdMcwi (MCW), ACI/EurMcwi (MCW), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB31/IpcvMcwi (2019), LEXF1C/Stm (2019), LEXF4/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), F344/DuCrl (2019), SBH/Ygl (MCW)
20 5414513 5414514 C A snv F344/NCrl (2019), ACI/N (2020), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), F344/DuCrl (2019), F344/Stm (2019)
20 5414516 5414517 A T snv SS/JrHsdMcwi (2019), ACI/EurMcwi (MCW), SBH/Ygl (MCW), SS/JrHsdMcwi (MCW), ACI/N (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB31/IpcvMcwi (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020)
20 5414517 5414518 C T snv CDR, CDS, SBH/Ygl (MCW), LEXF10A/StmMcwi (2020), M520/N (2020)
20 5414522 5414523 C T snv COP/CrCrl (MCW & UW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (MCW)
20 5414546 5414547 G A snv COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), SS/JrHsdMcwi (MCW)
20 5414549 5414550 C A snv LEXF10A/StmMcwi (2020), GK/FarMcwi (2019), LEW/Crl (2019), M520/N (2020), SBH/Ygl (MCW), CDS, CDR
20 5414555 5414556 C G snv WAG/RijCrl (2020), MR/N (2020), SBN/Ygl (MCW), FHL/EurMcwi (MCW)
20 5414559 5414560 C T snv WKY/NCrl (2019), CDS, CDR
20 5414561 5414562 C G snv MR/N (MCW), SBN/Ygl (MCW)
20 5414561 5414562 C T snv FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), SBH/Ygl (MCW)
20 5414562 5414563 G T snv CDS, ACI/N (MCW), WN/N (2020), WKY/N (2020), WKY/NCrl (2019), MWF/Hsd (2019), LEW/Crl (2019), CDR, BXH2/CubMcwi (2020), DA/OlaHsd (2019)
20 5414793 5414794 G C snv CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
20 5414799 5414800 G A snv SBH/Ygl (MCW), SBN/Ygl (MCW)
20 5414799 5414800 G T snv SBH/Ygl (MCW)
20 5414800 5414801 C G snv LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), FXLE16/Stm (2020)
20 5414802 5414803 G A snv CDS, CDR
20 5414814 5414815 G C snv GK/Ox (RGD)
20 5414818 5414819 T C snv LEW/Crl (2019), LE/Stm (2019), M520/NRrrcMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), FXLE16/Stm (2020), ACI/EurMcwi (2019), GK/FarMcwi (2019)
20 5414820 5414821 G C snv WAG/RijCrl (2020)
20 5414821 5414822 G A snv WN/N (2020), WKY/N (2020), WKY/NCrl (2019), M520/NRrrcMcwi (2019), LE/Stm (2019), LEW/Crl (2019), GK/FarMcwi (2019), ACI/EurMcwi (2019), FXLE16/Stm (2020)
20 5414824 5414825 A T snv ACI/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), WN/N (2020), M520/NRrrcMcwi (2019), WKY/NCrl (2019), WKY/N (2020), LE/Stm (2019)
20 5414868 5414869 G A snv MR/N (2020), SHRSP/A3NCrl (2019), BXH2/CubMcwi (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019)
20 5414874 5414875 T A snv MR/N (2020)
20 5414883 5414884 G T snv ACI/N (2020), BXH2/CubMcwi (2020), GK/FarMcwi (2019), ACI/EurMcwi (2019)
20 5414886 5414887 G T snv LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), FXLE16/Stm (2020), SBH/Ygl (MCW), BUF/N (2020)
20 5414889 5414890 G C snv WN/N (2020), WKY/N (2020), ACI/EurMcwi (2019)
20 5414891 5414892 G T snv HXB2/IpcvMcwi (2019), GK/FarMcwi (2019), BXH2/CubMcwi (2020), HXB31/IpcvMcwi (2019), MR/N (2020), SHRSP/A3NCrl (2019)
20 5414931 5414932 G C snv ACI/N (2020), DA/OlaHsd (2019)
20 5414934 5414935 G A snv DA/OlaHsd (2019), MWF/Hsd (2019), LEXF4/Stm (2020)
20 5414935 5414936 G A snv DA/OlaHsd (2019), FHH/EurMcwi (2019), MWF/Hsd (2019), LEXF4/Stm (2020)
20 5414937 5414938 C A snv SS/JrHsdMcwi (MCW), LL/MavRrrcAek (2020), F344/NCrl (2019)
20 5414938 5414939 C T snv BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020)
20 5414940 5414941 G A snv WN/N (MCW)
20 5414949 5414950 G A snv GK/FarMcwi (2019), MWF/Hsd (2019), SHRSP/A3NCrl (2019), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), ACI/EurMcwi (MCW), FHH/EurMcwi (2019), BXH2/CubMcwi (2020)
20 5414957 5414958 G C snv PVG/Seac (2019)
20 5414966 5414967 A C snv ACI/EurMcwi (MCW), GK/Ox (RGD)
20 5414967 5414968 G A snv FHL/EurMcwi (MCW), FXLE16/Stm (2020)
20 5414970 5414971 A C snv FXLE16/Stm (2020)
20 5414982 5414983 C A snv WN/N (2020)
20 5414983 5414984 A T snv DA/OlaHsd (2019), LL/MavRrrcAek (2020), ACI/EurMcwi (2019)
20 5414992 5414993 G A snv M520/NRrrcMcwi (2019), FHL/EurMcwi (MCW), WN/N (2020), M520/N (2020), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), FXLE16/Stm (2020)
20 5414994 5414995 G A snv MWF/Hsd (2019), FXLE16/Stm (2020)
20 5415000 5415001 C A snv LL/MavRrrcAek (2020)
20 5415004 5415005 G C snv DA/OlaHsd (2019), FHH/EurMcwi (2019), LEXF4/Stm (2020), MWF/Hsd (2019)
20 5415009 5415010 G C snv HXB2/IpcvMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), LL/MavRrrcAek (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), WN/N (2020), LEXF4/Stm (2020)
20 5415010 5415011 C T snv WN/N (2020), SHRSP/A3NCrl (2019), MWF/Hsd (2019), LL/MavRrrcAek (2020), LEXF4/Stm (2020), HXB2/IpcvMcwi (2019), FHH/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019)
20 5415029 5415030 G C snv FHL/EurMcwi (MCW)
20 5415031 5415032 G A snv MWF/Hsd (2019), FXLE16/Stm (2020), LL/MavRrrcAek (2020)
20 5415221 5415222 G A snv BUF/N (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020), LEXF4/Stm (2020), WAG/RijCrl (2020), LH/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), MWF/Hsd (2019), LE/Stm (2019)
20 5415224 5415225 C A snv CDR, WKY/N (2020), WKY/NCrl (2019), CDS
20 5415233 5415234 T A snv ACI/N (2020), M520/N (2020), LEXF3/Stm (2020), FXLE18/Stm (2020)
20 5415234 5415235 C G snv CDR, WN/N (2020), GH/OmrMcwi (MCW), SBN/Ygl (MCW), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), CDS
20 5415254 5415255 A C snv CDR, WN/N (2020), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), CDS
20 5415255 5415256 C G snv MR/N (MCW), FHL/EurMcwi (MCW)
20 5415266 5415267 A G snv CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), MR/N (MCW), WN/N (MCW), ACI/N (2020), BUF/N (2020), F344/N (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF4/Stm (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), WKY/N (2020), CDS
20 5415267 5415268 C G snv SR/JrHsd (MCW), SS/JrHsdMcwi (2019), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (MCW)
20 5415268 5415269 G A snv CDR, SBH/Ygl (MCW), GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW), CDS, SS/JrHsdMcwi (MCW)
20 5415268 5415269 G C snv FHH/EurMcwi (MCW)
20 5415268 5415269 G T snv SR/JrHsd (MCW), SBN/Ygl (MCW), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW)
20 5415272 5415273 G T snv FHL/EurMcwi (MCW)
20 5415274 5415275 C T snv M520/N (2020)
20 5415278 5415279 T A snv WAG/RijCrl (2020)
20 5415280 5415281 C T snv PVG/Seac (2019)
20 5415281 5415282 G A snv WAG/RijCrl (2020)
20 5415281 5415282 G C snv CDR, CDS
20 5415283 5415284 G A snv ACI/EurMcwi (2019)
20 5415289 5415290 G A snv SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), PVG/Seac (2019), SR/JrHsd (2020)
20 5415290 5415291 A G snv CDR, CDS
20 5415308 5415309 G C snv GK/FarMcwi (2019), ACI/EurMcwi (2019)
20 5415310 5415311 C A snv SHRSP/A3NCrl (2019)
20 5415311 5415312 G T snv ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), SS/JrHsdMcwi (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), FHL/EurMcwi (MCW)
20 5415317 5415318 A T snv WAG/RijCrl (2020)
20 5415319 5415320 A G snv FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/DuCrl (2019), WAG/RijCrl (2020), LEXF11/Stm (2020), LEXF1C/Stm (2019), MWF/Hsd (2019), SR/JrHsd (2020), FXLE18/Stm (2020)
20 5415321 5415322 C G snv GH/OmrMcwi (MCW)
20 5415328 5415329 A G snv WAG/RijCrl (2020)
20 5415337 5415338 C A snv SBH/Ygl (MCW)
20 5415338 5415339 T A snv FHH/EurMcwi (MCW), ACI/EurMcwi (2019), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020)
20 5415344 5415345 C T snv SBH/Ygl (MCW), FXLE16/Stm (2020), LE/Stm (2019), M520/N (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), LH/MavRrrcAek (2020)
20 5415348 5415349 G T snv GH/OmrMcwi (MCW), CDS
20 5415349 5415350 A G snv MR/N (MCW), M520/N (MCW), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), Buf/N (MCW), ACI/EurMcwi (2019)
20 5415350 5415351 C T snv FHH/EurMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020)
20 5415365 5415366 C G snv CDR, CDS, ACI/EurMcwi (MCW), SBH/Ygl (MCW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW)
20 5415374 5415375 T A snv LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019)
20 5415375 5415376 C G snv SS/JrHsdMcwi (2019), M520/NRrrcMcwi (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), WN/N (2020), WKY/N (2020), WKY/NCrl (2019), SR/JrHsd (2020), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019)
20 5415377 5415378 C G snv LE/Stm (2019)
20 5415380 5415381 G A snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), SBN/Ygl (MCW), FHL/EurMcwi (MCW)
20 5415380 5415381 G T snv SBH/Ygl (MCW), GH/OmrMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), CDR, CDS
20 5415386 5415387 A G snv F344/DuCrl (2019), ACI/N (2020)
20 5415395 5415396 A C snv FHL/EurMcwi (MCW), SBN/Ygl (MCW)
20 5415400 5415401 G A snv COP/CrCrl (MCW & UW)
20 5415406 5415407 G A snv ACI/N (2020), LE/Stm (2019), F344/DuCrl (2019)
20 5415407 5415408 C T snv BUF/N (2020), FXLE16/Stm (2020), LE/Stm (2019), M520/N (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), LH/MavRrrcAek (2020)
20 5415409 5415410 G A snv BUF/N (2020), FXLE16/Stm (2020), LE/Stm (2019), M520/N (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), LH/MavRrrcAek (2020)
20 5415413 5415414 G T snv CDR, CDS, WN/N (MCW), ACI/N (MCW), GH/OmrMcwi (MCW)
20 5415421 5415422 G T snv SR/JrHsd (MCW)
20 5415422 5415423 C A snv CDS, CDR
20 5415424 5415425 T G snv ACI/EurMcwi (MCW), SS/JrHsdMcwi (2019), SS/JrHsdMcwi (MCW), ACI/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SR/JrHsd (MCW)
20 5415445 5415446 G A snv CDR, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), WKY/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), CDS
20 5415450 5415451 G T snv ACI/EurMcwi (MCW), SR/JrHsd (MCW), COP/CrCrl (MCW & UW)
20 5415454 5415455 C T snv COP/CrCrl (MCW & UW), SS/JrHsdMcwi (MCW), FHH/EurMcwi (MCW)
20 5415461 5415462 A T snv M520/NRrrcMcwi (2019), ACI/EurMcwi (2019)
20 5415468 5415469 G T snv ACI/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), LEXF4/Stm (2020), LL/MavRrrcAek (2020), MWF/Hsd (2019), SR/JrHsd (2020), FHL/EurMcwi (MCW), SR/JrHsd (MCW), ACI/EurMcwi (2019)
20 5415472 5415473 G A snv COP/CrCrl (MCW & UW), SBH/Ygl (MCW)
20 5415473 5415474 G A snv LEXF10A/StmMcwi (2020), WAG/RijCrl (2020)
20 5415477 5415478 G C snv WAG/RijCrl (2020), LEXF10A/StmMcwi (2020)
20 5415491 5415492 G A snv SS/JrHsdMcwi (MCW)
20 5416467 5416468 T A snv WAG/RijCrl (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LH/MavRrrcAek (2020), LE/Stm (2019), FHL/EurMcwi (MCW), FXLE16/Stm (2020), FHH/EurMcwi (2019), BUF/N (2020), SBN/Ygl (MCW), SBH/Ygl (MCW), LEXF4/Stm (2020)
20 5416477 5416478 G A snv WAG/RijCrl (2020), SHRSP/A3NCrl (2019), MWF/Hsd (2019), MR/N (2020), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LE/Stm (2019), LEXF1C/Stm (2019), HXB31/IpcvMcwi (2019), FXLE16/Stm (2020), SBN/Ygl (MCW), WN/N (2020), FHL/EurMcwi (MCW)
20 5416478 5416479 C T snv WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020)
20 5416495 5416496 C A snv FHL/EurMcwi (MCW)
20 5416495 5416496 C T snv SBN/Ygl (MCW), SBH/Ygl (MCW)
20 5416500 5416501 A C snv BUF/N (2020), FXLE16/Stm (2020)
20 5416513 5416514 G A snv LEXF1A/Stm (2019), LEXF11/Stm (2020), FXLE18/Stm (2020), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), DA/OlaHsd (2019), LEXF2B/Stm (2019), LEXF1C/Stm (2019), ACI/EurMcwi (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), MR/N (2020), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WN/N (2020)
20 5416531 5416532 G C snv SHRSP/A3NCrl (2019), HXB2/IpcvMcwi (2019)
20 5416553 5416554 A G snv LE/Stm (2019), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), WKY/N (2020), LEXF4/Stm (2020), M520/N (2020)
20 5416565 5416566 C T snv SHRSP/A3NCrl (2019), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020)
20 5416571 5416572 A T snv FHL/EurMcwi (MCW)
20 5416582 5416583 G A snv SHRSP/A3NCrl (2019), M520/N (2020), LEXF10A/StmMcwi (2020), LH/MavRrrcAek (2020), FXLE16/Stm (2020), SBN/Ygl (MCW)
20 5416592 5416593 C G snv BN/NHsdMcwi (2019)
20 5416600 5416601 A G snv FHL/EurMcwi (MCW), WAG/RijCrl (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LL/MavRrrcAek (2020), MWF/Hsd (2019), SS/JrHsdMcwi (2019), ACI/N (2020)
20 5416606 5416607 C T snv BN/NHsdMcwi (2019), BN-Lx/CubMcwi (2019)
20 5416609 5416610 G A snv F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), SS/JrHsdMcwi (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LL/MavRrrcAek (2020), LEXF11/Stm (2020)
20 5416630 5416631 G A snv SBN/Ygl (MCW), FHL/EurMcwi (MCW)
20 5416651 5416652 G T snv PVG/Seac (2019)
20 5416654 5416655 T G snv CDR, CDS, GH/OmrMcwi (MCW), BXH2/CubMcwi (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), WKY/N (2020), LEW/Crl (2019), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), HXB31/IpcvMcwi (2019)
20 5416666 5416667 C G snv BUF/N (2020), M520/N (2020), FXLE16/Stm (2020), FHH/EurMcwi (2019)
20 5416669 5416670 C T snv CDR, WN/N (2020), ACI/N (MCW), F344/NRrrc (MCW), WN/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), BN/NHsdMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), MR/N (2020), PVG/Seac (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), CDS
20 5416670 5416671 T C snv F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), ACI/N (MCW), F344/NRrrc (MCW), WN/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), BN/NHsdMcwi (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019)
20 5416675 5416676 A G snv CDR, WN/N (2020), GH/OmrMcwi (MCW), WKY/N (MCW), BN/NHsdMcwi (2020), BXH2/CubMcwi (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), CDS
20 5416682 5416683 A C snv CDR, WN/N (2020), GH/OmrMcwi (MCW), WKY/N (MCW), BXH2/CubMcwi (2020), GK/FarMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), CDS
20 5416685 5416686 A G snv HXB2/IpcvMcwi (2019), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), HXB31/IpcvMcwi (2019)
20 5416686 5416687 T G snv F344/NCrl (2019), SBN/Ygl (MCW), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), FHL/EurMcwi (MCW), F344/N (2020)
20 5416696 5416697 C T snv FHH/EurMcwi (2019)
20 5416697 5416698 G A snv FHH/EurMcwi (MCW), SBN/Ygl (MCW), FHL/EurMcwi (MCW)
20 5416704 5416705 G T snv FHH/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW)
20 5416714 5416715 C A snv MR/N (2020)
20 5416838 5416839 C T snv F344/Stm (2019)
20 5416856 5416857 T A snv WKY/N (2020)
20 5416866 5416867 A G snv PVG/Seac (2019), MR/N (2020), M520/NRrrcMcwi (2019), WKY/NCrl (2019), SHRSP/A3NCrl (2019), F344/NRrrc (MCW), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020)
20 5416869 5416870 C T snv FHL/EurMcwi (MCW)
20 5416877 5416878 A G snv M520/N (2020), LEXF4/Stm (2020), F344/Stm (2019), F344/N (2020), DA/OlaHsd (2019)
20 5416880 5416881 T G snv ACI/N (2020), ACI/EurMcwi (2019), F344/DuCrl (2019), F344/NCrl (2019), FHH/EurMcwi (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), WKY/NCrl (2019), DA/OlaHsd (2019)
20 5416881 5416882 A C snv LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), WKY/NCrl (2019), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020)
20 5416886 5416887 G T snv MWF/Hsd (2019)
20 5416889 5416890 C A snv COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), SBH/Ygl (MCW)
20 5416889 5416890 C G snv CDS, GH/OmrMcwi (MCW), CDR
20 5416902 5416903 C T snv CDS, CDR, ACI/EurMcwi (MCW), WN/N (2020), COP/CrCrl (MCW & UW), PVG/Seac (2019), SBH/Ygl (MCW), GH/OmrMcwi (MCW), WKY/N (2020)
20 5416904 5416905 A G snv M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LEW/Crl (2019), GK/FarMcwi (2019), FHH/EurMcwi (2019), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), DA/OlaHsd (2019), BUF/N (2020), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), WKY/NCrl (2019), CDS, CDR, ACI/N (2020), ACI/EurMcwi (2019)
20 5416905 5416906 T A snv FXLE16/Stm (2020)
20 5416907 5416908 A T snv M520/N (2020), LEXF10A/StmMcwi (2020), LEXF4/Stm (2020), BUF/N (2020)
20 5416921 5416922 C G snv CDS, WKY/N (2020), WN/N (2020), CDR
20 5416934 5416935 G C snv CDS, GH/OmrMcwi (MCW), CDR
20 5416940 5416941 G C snv FHH/EurMcwi (2019), F344/Stm (2019), F344/N (2020), DA/OlaHsd (2019), BUF/N (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), LEXF4/Stm (2020)
20 5416959 5416960 G C snv MR/N (2020), PVG/Seac (2019)
20 5416965 5416966 C T snv F344/DuCrl (2019)
20 5417150 5417151 A G snv FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), WAG/RijCrl (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), MR/N (MCW)
20 5417383 5417384 C A snv SBH/Ygl (MCW)
20 5417392 5417393 G A snv MWF/Hsd (2019), SBH/Ygl (MCW)
20 5417393 5417394 A T snv ACI/N (2020)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 7474646 7474647 C A snv LE/OrlBarth (UDEL)
20 7474661 7474662 C T snv DOB/Oda (KyushuU), IS-Tlk/Kyo (KyushuU), NIG-III/Hok (KyushuU), LE/Stm (KyushuU)
20 7474705 7474706 C G snv Crl:SD (UDEL), SDLEF7/Barth (UDEL)
20 7474937 7474938 G C snv SBH/Ygl (MCW), GH/OmrMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), BUF/MNa (KyushuU), KFRS3B/Kyo (KyushuU), HWY/Slc (KyushuU), SBN/Ygl (MCW), SDLEF7/Barth (UDEL), ZFDM (KyushuU)
20 7474943 7474944 G A snv NIG-III/Hok (KyushuU), BUF/MNa (KyushuU), SDLEF7/Barth (UDEL), SBN/Ygl (MCW), SBH/Ygl (MCW), LEC/Tj (KyushuU), RCS/Kyo (KyushuU), ZF (KyushuU), KFRS3B/Kyo (KyushuU)
20 7474943 7474944 G T snv IS-Tlk/Kyo (KyushuU), LE/Stm (KyushuU), IS/Kyo (KyushuU)
20 7474946 7474947 G A snv IS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), BDIX/NemOda (KyushuU)
20 7474958 7474959 G C snv HWY/Slc (KyushuU)
20 7474964 7474965 G C snv ZF (KyushuU)
20 7474994 7474995 G C snv SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL)
20 7475035 7475036 G T snv HWY/Slc (KyushuU)
20 7475045 7475046 T A snv LE/Stm (KyushuU), IS-Tlk/Kyo (KyushuU), IS/Kyo (KyushuU)
20 7475082 7475083 C T snv IS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), LE/Stm (KyushuU)
20 7475097 7475098 A G snv IS/Kyo (KyushuU), ZFDM (KyushuU), IS-Tlk/Kyo (KyushuU), LE/Stm (KyushuU)
20 7475365 7475366 G A snv SDLEF7/Barth (UDEL)
20 7475378 7475379 C G snv SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL)
20 7475387 7475388 G C snv RCS/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), BDIX/NemOda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), F344/NSlc (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU)
20 7475387 7475388 G T snv ZFDM (KyushuU)
20 7475398 7475399 A C snv SDLEF7/Barth (UDEL), KFRS3B/Kyo (KyushuU), LEC/Tj (KyushuU), BUF/MNa (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL)
20 7475399 7475400 C G snv LEC/Tj (KyushuU), DOB/Oda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), FHL/EurMcwi (MCW), F344/Stm (KyushuU), IS-Tlk/Kyo (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), SBN/Ygl (MCW), IS/Kyo (KyushuU), BUF/MNa (KyushuU)
20 7475400 7475401 G A snv ACI/EurMcwi (MCW), HWY/Slc (KyushuU), COP/CrCrl (MCW & UW)
20 7475410 7475411 A G snv F344/Jcl (KyushuU), RCS/Kyo (KyushuU), LE/Stm (KyushuU), NIG-III/Hok (KyushuU), ZFDM (KyushuU), BUF/MNa (KyushuU), SDLEF7/Barth (UDEL), BDIX/NemOda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), Crl:SD (UDEL)
20 7475411 7475412 C G snv F344/NSlc (KyushuU), F344/Stm (KyushuU), F344/DuCrlCrlj (KyushuU)
20 7475412 7475413 G A snv NIG-III/Hok (KyushuU), Crl:SD (UDEL), SDLEF7/Barth (UDEL), LE/Stm (KyushuU), BDIX/NemOda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU)
20 7475412 7475413 G T snv IS/Kyo (KyushuU), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), DOB/Oda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), ZFDM (KyushuU)
20 7475452 7475453 G C snv LE/OrlBarth (UDEL)
20 7475493 7475494 A G snv IS/Kyo (KyushuU), ZFDM (KyushuU), NIG-III/Hok (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), LEC/Tj (KyushuU), BDIX/NemOda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU)
20 7475494 7475495 C G snv FHL/EurMcwi (MCW), SBN/Ygl (MCW)
20 7475505 7475506 T A snv LEC/Tj (KyushuU), SBN/Ygl (MCW)
20 7475505 7475506 T G snv ZFDM (KyushuU), NIG-III/Hok (KyushuU), LE/Stm (KyushuU)
20 7475506 7475507 T G snv SBN/Ygl (MCW)
20 7475507 7475508 T G snv ZF (KyushuU), ZFDM (KyushuU), SBN/Ygl (MCW), NIG-III/Hok (KyushuU), HTX/Kyo (KyushuU), LEC/Tj (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU)
20 7475509 7475510 C G snv RCS/Kyo (KyushuU), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), IS/Kyo (KyushuU), LE/Stm (KyushuU), ZFDM (KyushuU), IS-Tlk/Kyo (KyushuU), LEC/Tj (KyushuU), BDIX/NemOda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU)
20 7475509 7475510 C T snv HTX/Kyo (KyushuU)
20 7475518 7475519 T A snv F344/DuCrlCrlj (KyushuU), F344/Jcl (KyushuU), F344/Stm (KyushuU), F344/NSlc (KyushuU)
20 7475519 7475520 C G snv SDLEF7/Barth (UDEL), ZFDM (KyushuU), IS/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), LE/OrlBarth (UDEL)
20 7475524 7475525 G A snv ZF (KyushuU), HWY/Slc (KyushuU), F344/Stm (KyushuU), F344/NSlc (KyushuU), ZFDM (KyushuU), BUF/MNa (KyushuU), FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), F344/DuCrlCrlj (KyushuU)
20 7475524 7475525 G T snv DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), KFRS3B/Kyo (KyushuU), ZFDM (KyushuU), BDIX/NemOda (KyushuU), LEC/Tj (KyushuU), IS-Tlk/Kyo (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), NIG-III/Hok (KyushuU), IS/Kyo (KyushuU), Crl:SD (UDEL), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL)
20 7475539 7475540 A C snv FHL/EurMcwi (MCW), KFRS3B/Kyo (KyushuU), LEC/Tj (KyushuU), SBN/Ygl (MCW)
20 7475556 7475557 A G snv IS-Tlk/Kyo (KyushuU)
20 7475557 7475558 G T snv SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), NIG-III/Hok (KyushuU), ZFDM (KyushuU), IS-Tlk/Kyo (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), LE/Stm (KyushuU)
20 7475559 7475560 C T snv DOB/Oda (KyushuU)
20 7475568 7475569 T G snv F344/DuCrlCrlj (KyushuU), F344/Jcl (KyushuU), F344/Stm (KyushuU), F344/NSlc (KyushuU)
20 7475575 7475576 A G snv Crl:SD (UDEL)
20 7475586 7475587 G A snv IS/Kyo (KyushuU), F344/DuCrlCrlj (KyushuU), F344/NSlc (KyushuU), F344/Stm (KyushuU), ZF (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), DOB/Oda (KyushuU), HWY/Slc (KyushuU)
20 7475589 7475590 G A snv LE/OrlBarth (UDEL), ZFDM (KyushuU), IS/Kyo (KyushuU), NIG-III/Hok (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), Crl:SD (UDEL)
20 7475604 7475605 T C snv SBN/Ygl (MCW), FHL/EurMcwi (MCW)
20 7475634 7475635 C T snv LE/OrlBarth (UDEL), Crl:SD (UDEL), SBN/Ygl (MCW)
20 7476611 7476612 T A snv SBH/Ygl (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), SBN/Ygl (MCW)
20 7476621 7476622 G A snv LEC/Tj (KyushuU), KFRS3B/Kyo (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), BDIX/NemOda (KyushuU), HWY/Slc (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), BUF/MNa (KyushuU), FHL/EurMcwi (MCW)
20 7476622 7476623 C T snv FHH/EurMcwi (MCW), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL)
20 7476633 7476634 C T snv F344/Stm (KyushuU), F344/NSlc (KyushuU)
20 7476639 7476640 C T snv KFRS3B/Kyo (KyushuU), RCS/Kyo (KyushuU), BUF/MNa (KyushuU), SBN/Ygl (MCW)
20 7476744 7476745 A G snv LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
20 7476774 7476775 G A snv LE/OrlBarth (UDEL), Crl:SD (UDEL), SDLEF7/Barth (UDEL)
20 7476798 7476799 T G snv HWY/Slc (KyushuU), GH/OmrMcwi (MCW)
20 7476813 7476814 C T snv LEC/Tj (KyushuU), F344/Jcl (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), ZFDM (KyushuU), IS/Kyo (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU)
20 7476814 7476815 T C snv ZFDM (KyushuU), DOB/Oda (KyushuU), ZF (KyushuU), KFRS3B/Kyo (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), BDIX/NemOda (KyushuU)
20 7476819 7476820 A G snv GH/OmrMcwi (MCW)
20 7476826 7476827 A C snv GH/OmrMcwi (MCW)
20 7476829 7476830 A G snv SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), IS/Kyo (KyushuU), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Jcl (KyushuU)
20 7476830 7476831 T G snv BUF/MNa (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), BDIX/NemOda (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), FHL/EurMcwi (MCW), KFRS3B/Kyo (KyushuU), ZF (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), SBN/Ygl (MCW)
20 7476841 7476842 G A snv LE/OrlBarth (UDEL), LE/Stm (KyushuU), SDLEF7/Barth (UDEL)
20 7476848 7476849 G T snv LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), LE/Stm (KyushuU)
20 7476870 7476871 C A snv LE/Stm (KyushuU), LEC/Tj (KyushuU), RCS/Kyo (KyushuU), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL)
20 7477013 7477014 C T snv ZF (KyushuU)
20 7477016 7477017 C G snv HWY/Slc (KyushuU)
20 7477018 7477019 G A snv ZF (KyushuU)
20 7477294 7477295 A G snv FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SDLEF7/Barth (UDEL), KFRS3B/Kyo (KyushuU), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), LE/OrlBarth (UDEL)
20 7477536 7477537 G A snv SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW)
20 7477549 7477550 C T snv LEC/Tj (KyushuU)
20 7477555 7477556 G T snv LEC/Tj (KyushuU)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 5056769 5056770 G T snv HCR/1Mco (UMich), LCR/2Mco (UMich), HCR/2Mco (UMich)
20 5056829 5056830 C G snv MR/N (KNAW)
20 5056829 5056830 C T snv FHL/EurMcwi (MCW), ACI/EurMcwi (MCW)
20 5056830 5056831 G T snv ACI/N (KNAW)
20 5057061 5057062 G C snv ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), SHRSP/Gcrc (ICL), ACI/EurMcwi (ICL), BBDP/WorN (ICL), SHR/OlaIpcv (ICL), GH/OmrMcwi (MCW)
20 5057208 5057209 G A snv WN/N (KNAW), SHRSP/Gcrc (MDC)
20 5057221 5057222 A G snv HCR/1Mco (UMich), LCR/2Mco (UMich), HCR/2Mco (UMich), LCR/1Mco (UMich)
20 5057260 5057261 G A snv HCR/1Mco (UMich), LCR/1Mco (UMich), LCR/2Mco (UMich), HCR/2Mco (UMich)
20 5057277 5057278 G C snv LCR/2Mco (UMich), HCR/1Mco (UMich), LCR/1Mco (UMich), HCR/2Mco (UMich)
20 5057523 5057524 C G snv FHL/EurMcwi (MCW), MR/N (KNAW)
20 5057534 5057535 A G snv MR/N (KNAW), WN/N (KNAW)
20 5057617 5057618 A G snv MR/N (KNAW), M520/N (KNAW), BUF/N (KNAW)
20 5057618 5057619 C T snv ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), SS/JrHsdMcwi (MDC), COP/CrCrl (MCW & UW)
20 5057629 5057630 T G snv SHRSP/Gcrc (MDC)
20 5057630 5057631 T C snv COP/CrCrl (MCW & UW)
20 5057631 5057632 T G snv COP/CrCrl (MCW & UW)
20 5057643 5057644 C G snv COP/CrCrl (MCW & UW)
20 5057648 5057649 G A snv ACI/EurMcwi (MCW), FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW)
20 5057663 5057664 A C snv FHL/EurMcwi (MCW)
20 5057713 5057714 G A snv FHH/EurMcwi (MDC), WKY/N (KNAW)
20 5057728 5057729 T C snv FHL/EurMcwi (MCW)
20 5058735 5058736 T A snv LCR/2Mco (UMich), HCR/2Mco (UMich), HCR/1Mco (UMich), LE/Stm (KNAW), FHL/EurMcwi (MCW)
20 5058745 5058746 G A snv FHL/EurMcwi (MCW)
20 5058763 5058764 C A snv FHL/EurMcwi (MCW)
20 5058781 5058782 G A snv LCR/2Mco (UMich), HCR/2Mco (UMich), LCR/1Mco (UMich), HCR/1Mco (UMich)
20 5058822 5058823 C A snv LCR/1Mco (UMich)
20 5058839 5058840 A T snv FHL/EurMcwi (MCW)
20 5058868 5058869 A G snv LCR/1Mco (UMich), HCR/2Mco (UMich), LCR/2Mco (UMich)
20 5058898 5058899 G A snv FHL/EurMcwi (MCW)
20 5058922 5058923 T G snv GH/OmrMcwi (MCW), FHL/EurMcwi (MCW)
20 5058937 5058938 C T snv WN/N (KNAW), F344/NRrrc (KNAW), ACI/N (KNAW)
20 5058938 5058939 T C snv F344/NRrrc (KNAW), WN/N (KNAW), ACI/N (KNAW), SR/JrHsd (MCW), FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW)
20 5058943 5058944 A G snv WKY/N (KNAW), GH/OmrMcwi (MCW)
20 5058950 5058951 A C snv GH/OmrMcwi (MCW), WKY/N (KNAW)
20 5058953 5058954 A G snv SS/JrHsdMcwi (MDC), SS/JrHsdMcwi (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW)
20 5058954 5058955 T G snv HCR/1Mco (UMich), LCR/2Mco (UMich), LCR/1Mco (UMich), SS/JrHsdMcwi (MCW), FHL/EurMcwi (MCW)
20 5058972 5058973 G T snv COP/CrCrl (MCW & UW)
20 5058992 5058993 C T snv SS/JrHsdMcwi (MDC)
20 5059134 5059135 A G snv F344/NRrrc (KNAW)
20 5059174 5059175 C G snv SS/JrHsdMcwi (MCW)
20 5059418 5059419 A G snv MR/N (KNAW), FHL/EurMcwi (MCW)
20 5059660 5059661 G A snv FHH/EurMcwi (MDC)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 4905412 4905413 C A snv LL/MavRrrcAek (2020), M520/NRrrcMcwi (2019), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), HXB31/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE18/Stm (2020), FXLE16/Stm (2020), F344/Stm (2019), F344/NCrl (2019), F344/DuCrl (2019), BXH2/CubMcwi (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SS/JrHsdMcwi (2019), SR/JrHsd (2020), LEXF10A/StmMcwi (2020), MWF/Hsd (2019), LE/Stm (2019)
20 4905415 4905416 A T snv SS/JrHsdMcwi (2019), SR/JrHsd (2020), SHRSP/A3NCrl (2019), M520/NRrrcMcwi (2019), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LE/Stm (2019), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), HXB31/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE18/Stm (2020), FXLE16/Stm (2020), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), BXH2/CubMcwi (2020), SHR/OlalpcvMcwi (2019)
20 4905461 4905462 G T snv WKY/N (2020), WKY/NCrl (2019), LEW/Crl (2019), FHH/EurMcwi (2019), DA/OlaHsd (2019), WN/N (2020)
20 4905699 4905700 C G snv FXLE16/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), M520/NRrrcMcwi (2019), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), LH/MavRrrcAek (2020)
20 4905785 4905786 G T snv BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), M520/N (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), LH/MavRrrcAek (2020)
20 4905837 4905838 C T snv BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), M520/N (2020), LH/MavRrrcAek (2020), M520/NRrrcMcwi (2019), LE/Stm (2019)
20 4905930 4905931 G A snv SS/JrHsdMcwi (2019), WAG/RijCrl (2020)
20 4905931 4905932 C G snv WAG/RijCrl (2020)
20 4905935 4905936 G A snv WAG/RijCrl (2020)
20 4906120 4906121 G A snv WAG/RijCrl (2020), MWF/Hsd (2019), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), BUF/N (2020), LE/Stm (2019), LEXF4/Stm (2020), FXLE16/Stm (2020), FHH/EurMcwi (2019), LH/MavRrrcAek (2020)
20 4906165 4906166 A G snv M520/N (2020), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF11/Stm (2020), F344/N (2020), BUF/N (2020), WN/N (2020), ACI/EurMcwi (2019)
20 4906207 4906208 G C snv FHH/EurMcwi (2019)
20 4906218 4906219 A G snv F344/DuCrl (2019), LEXF11/Stm (2020), LEXF1C/Stm (2019), SR/JrHsd (2020), WAG/RijCrl (2020)
20 4906243 4906244 C T snv M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), FXLE16/Stm (2020), BUF/N (2020)
20 4906248 4906249 A G snv BXH2/CubMcwi (2020), WKY/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), BUF/N (2020), WN/N (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020)
20 4906273 4906274 T A snv BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), GK/FarMcwi (2019), LEXF2B/Stm (2019), LEXF11/Stm (2020), LEXF1C/Stm (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), HXB31/IpcvMcwi (2019)
20 4906274 4906275 C G snv M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019)
20 4906306 4906307 C T snv LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), FXLE16/Stm (2020), BUF/N (2020), M520/N (2020), M520/NRrrcMcwi (2019)
20 4906344 4906345 G A snv HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), HXB2/IpcvMcwi (2019), GK/FarMcwi (2019), FXLE16/Stm (2020), FHH/EurMcwi (2019), DA/OlaHsd (2019), BXH2/CubMcwi (2020), BUF/N (2020), ACI/N (2020), ACI/EurMcwi (2019)
20 4906359 4906360 T C snv MWF/Hsd (2019)
20 4907553 4907554 T G snv BXH2/CubMcwi (2020), GK/FarMcwi (2019), WKY/N (2020), WKY/NCrl (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), PVG/Seac (2019), MR/N (2020), LEW/Crl (2019), HXB31/IpcvMcwi (2019), HXB2/IpcvMcwi (2019)
20 4907574 4907575 A G snv BXH2/CubMcwi (2020), WKY/NCrl (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), PVG/Seac (2019), WKY/N (2020), LEW/Crl (2019), HXB31/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), GK/FarMcwi (2019), MR/N (2020)
20 4907765 4907766 A G snv ACI/EurMcwi (2019), PVG/Seac (2019), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), FHH/EurMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), WKY/NCrl (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), ACI/N (2020)
20 4907779 4907780 T G snv WKY/NCrl (2019), SHR/OlalpcvMcwi (2019), PVG/Seac (2019),