Arid5b (AT-rich interaction domain 5B) - Rat Genome Database

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Gene: Arid5b (AT-rich interaction domain 5B) Rattus norvegicus
Analyze
Symbol: Arid5b
Name: AT-rich interaction domain 5B
RGD ID: 1311735
Description: Predicted to enable transcription cis-regulatory region binding activity and transcription coactivator activity. Predicted to be involved in adipose tissue development and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including cellular response to leukemia inhibitory factor; face morphogenesis; and gonad development. Predicted to be located in nucleus. Orthologous to human ARID5B (AT-rich interaction domain 5B); INTERACTS WITH 17beta-estradiol; 2,2',5,5'-tetrachlorobiphenyl; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AT rich interactive domain 5B (Mrf1 like); AT-rich interactive domain-containing protein 5B; LOC309728
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82020,305,693 - 20,489,689 (+)NCBIGRCr8
mRatBN7.22020,307,731 - 20,490,746 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2020,307,731 - 20,487,433 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2021,036,636 - 21,216,037 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02020,389,092 - 20,568,659 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02020,864,312 - 21,043,777 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02021,713,900 - 21,881,193 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2021,564,975 - 21,880,715 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02023,813,989 - 23,844,315 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02023,887,737 - 23,979,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42021,122,734 - 21,307,034 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12021,136,531 - 21,320,359 (+)NCBI
Celera2021,672,430 - 21,850,867 (+)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
7-Hydroxymethotrexate  (ISO)
8-Br-cAMP  (ISO)
actinomycin D  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
biochanin A  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
celastrol  (ISO)
chloroprene  (EXP)
chlorpyrifos  (ISO)
cisplatin  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gedunin  (ISO)
glyphosate  (ISO)
hydrogen cyanide  (ISO)
indometacin  (ISO)
isobutanol  (ISO)
isoprenaline  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
mercury dibromide  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
Nutlin-3  (ISO)
panobinostat  (ISO)
pentanal  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chloride  (ISO)
potassium cyanide  (ISO)
potassium dichromate  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8649988   PMID:10329386   PMID:11483573   PMID:14651970   PMID:17143286   PMID:17962384   PMID:18070594   PMID:20439489   PMID:21532585   PMID:33383116  


Genomics

Comparative Map Data
Arid5b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82020,305,693 - 20,489,689 (+)NCBIGRCr8
mRatBN7.22020,307,731 - 20,490,746 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2020,307,731 - 20,487,433 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2021,036,636 - 21,216,037 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02020,389,092 - 20,568,659 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02020,864,312 - 21,043,777 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02021,713,900 - 21,881,193 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2021,564,975 - 21,880,715 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02023,813,989 - 23,844,315 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02023,887,737 - 23,979,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42021,122,734 - 21,307,034 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12021,136,531 - 21,320,359 (+)NCBI
Celera2021,672,430 - 21,850,867 (+)NCBICelera
Cytogenetic Map20p11NCBI
ARID5B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381061,901,699 - 62,096,944 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1061,901,684 - 62,096,944 (+)EnsemblGRCh38hg38GRCh38
GRCh371063,661,458 - 63,856,703 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361063,331,449 - 63,526,709 (+)NCBINCBI36Build 36hg18NCBI36
Celera1056,927,884 - 57,123,747 (+)NCBICelera
Cytogenetic Map10q21.2NCBI
HuRef1057,650,056 - 57,846,210 (+)NCBIHuRef
CHM1_11063,943,136 - 64,138,811 (+)NCBICHM1_1
T2T-CHM13v2.01062,758,555 - 62,953,605 (+)NCBIT2T-CHM13v2.0
Arid5b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391067,928,353 - 68,114,596 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1067,928,350 - 68,114,570 (-)EnsemblGRCm39 Ensembl
GRCm381068,092,523 - 68,279,355 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1068,092,520 - 68,278,740 (-)EnsemblGRCm38mm10GRCm38
MGSCv371067,558,341 - 67,741,474 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361067,490,950 - 67,674,083 (-)NCBIMGSCv36mm8
Celera1069,194,289 - 69,342,104 (-)NCBICelera
Cytogenetic Map10B5.1- B5.2NCBI
cM Map1035.14NCBI
Arid5b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542515,253,211 - 15,433,934 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542515,253,951 - 15,433,246 (+)NCBIChiLan1.0ChiLan1.0
ARID5B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2874,104,212 - 74,299,846 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11074,109,716 - 74,305,168 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01058,426,519 - 58,621,986 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11060,756,484 - 60,952,174 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1060,756,484 - 60,952,174 (+)Ensemblpanpan1.1panPan2
ARID5B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1413,926,759 - 14,105,069 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl413,927,217 - 14,101,364 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha414,138,060 - 14,312,335 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0414,189,879 - 14,364,412 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl414,190,165 - 14,364,345 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1414,178,506 - 14,352,697 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0414,298,085 - 14,472,360 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0414,658,880 - 14,833,111 (+)NCBIUU_Cfam_GSD_1.0
Arid5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721366,986,019 - 67,166,323 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366141,072,260 - 1,252,283 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366141,072,263 - 1,252,573 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID5B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1465,408,598 - 65,598,485 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11465,408,603 - 65,598,485 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21470,609,874 - 70,684,099 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARID5B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1969,190,100 - 69,382,448 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl969,190,045 - 69,382,069 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604830,075,106 - 30,267,687 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arid5b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247911,610,169 - 1,785,477 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247911,610,169 - 1,785,512 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arid5b
921 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:69
Interacting mature miRNAs:90
Transcripts:ENSRNOT00000000787
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat

Markers in Region
D20Rat23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22020,312,164 - 20,312,315 (+)MAPPERmRatBN7.2
Rnor_6.02021,569,419 - 21,569,567NCBIRnor6.0
Rnor_6.02021,717,848 - 21,717,996NCBIRnor6.0
Rnor_5.02023,669,664 - 23,669,812UniSTSRnor5.0
Rnor_5.02023,817,937 - 23,818,085UniSTSRnor5.0
RGSC_v3.42021,127,027 - 21,127,536RGDRGSC3.4
RGSC_v3.42021,127,263 - 21,127,411UniSTSRGSC3.4
RGSC_v3.12021,140,827 - 21,141,336RGD
Celera2021,676,881 - 21,677,029UniSTS
RH 2.0 Map20260.5RGD
SHRSP x BN Map2020.22RGD
FHH x ACI Map2012.4099RGD
Cytogenetic Map20p11UniSTS
AU022012  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22020,419,348 - 20,419,572 (+)MAPPERmRatBN7.2
mRatBN7.2597,847,027 - 97,847,249 (+)MAPPERmRatBN7.2
Rnor_6.02021,813,663 - 21,813,886NCBIRnor6.0
Rnor_6.05101,555,709 - 101,555,930NCBIRnor6.0
Rnor_5.02023,912,313 - 23,912,536UniSTSRnor5.0
Rnor_5.05105,568,322 - 105,568,543UniSTSRnor5.0
RGSC_v3.42021,236,905 - 21,237,128UniSTSRGSC3.4
RGSC_v3.45102,304,459 - 102,304,680UniSTSRGSC3.4
Celera596,399,471 - 96,399,692UniSTS
Celera2021,783,150 - 21,783,373UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map20p11UniSTS
RH142848  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22020,342,036 - 20,342,182 (+)MAPPERmRatBN7.2
Rnor_6.02021,747,719 - 21,747,864NCBIRnor6.0
Rnor_6.02021,599,235 - 21,599,380NCBIRnor6.0
Rnor_5.02023,699,480 - 23,699,625UniSTSRnor5.0
Rnor_5.02023,847,808 - 23,847,953UniSTSRnor5.0
RGSC_v3.42021,157,134 - 21,157,279UniSTSRGSC3.4
Celera2021,706,757 - 21,706,902UniSTS
Cytogenetic Map20p11UniSTS
BG377178  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22020,306,201 - 20,306,416 (+)MAPPERmRatBN7.2
Rnor_6.02021,563,455 - 21,563,669NCBIRnor6.0
Rnor_5.02023,664,213 - 23,664,427UniSTSRnor5.0
RGSC_v3.42021,121,205 - 21,121,419UniSTSRGSC3.4
Celera2021,670,901 - 21,671,115UniSTS
Cytogenetic Map20p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000000787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2020,307,731 - 20,487,201 (+)Ensembl
Rnor_6.0 Ensembl2021,564,991 - 21,880,715 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2021,847,196 - 21,874,792 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2021,564,975 - 21,841,086 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105517   ⟹   ENSRNOP00000088828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2020,445,376 - 20,487,433 (+)Ensembl
RefSeq Acc Id: NM_001107624   ⟹   NP_001101094
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82020,306,714 - 20,486,144 (+)NCBI
mRatBN7.22020,307,731 - 20,487,201 (+)NCBI
Rnor_6.02021,713,900 - 21,881,193 (+)NCBI
Rnor_5.02023,813,989 - 23,844,315 (+)NCBI
Rnor_5.02023,887,737 - 23,979,982 (+)NCBI
RGSC_v3.42021,122,734 - 21,307,034 (+)RGD
Celera2021,672,430 - 21,850,867 (+)RGD
Sequence:
RefSeq Acc Id: XM_039098745   ⟹   XP_038954673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82020,307,316 - 20,489,689 (+)NCBI
mRatBN7.22020,308,064 - 20,490,746 (+)NCBI
RefSeq Acc Id: XM_039098746   ⟹   XP_038954674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82020,307,316 - 20,489,689 (+)NCBI
mRatBN7.22020,308,062 - 20,490,746 (+)NCBI
RefSeq Acc Id: XM_039098747   ⟹   XP_038954675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82020,337,392 - 20,489,689 (+)NCBI
mRatBN7.22020,356,172 - 20,490,746 (+)NCBI
RefSeq Acc Id: XM_039098749   ⟹   XP_038954677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82020,443,861 - 20,489,689 (+)NCBI
mRatBN7.22020,444,892 - 20,490,746 (+)NCBI
RefSeq Acc Id: XM_063279167   ⟹   XP_063135237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82020,305,693 - 20,489,689 (+)NCBI
RefSeq Acc Id: XM_063279168   ⟹   XP_063135238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82020,443,847 - 20,489,689 (+)NCBI
RefSeq Acc Id: NP_001101094   ⟸   NM_001107624
- UniProtKB: A6JKU7 (UniProtKB/TrEMBL),   A0A8I6AEL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038954674   ⟸   XM_039098746
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AEL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954673   ⟸   XM_039098745
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AEL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954675   ⟸   XM_039098747
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AEL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954677   ⟸   XM_039098749
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GGM4 (UniProtKB/TrEMBL),   A6JKU8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000088828   ⟸   ENSRNOT00000105517
RefSeq Acc Id: XP_063135237   ⟸   XM_063279167
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AEL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135238   ⟸   XM_063279168
- Peptide Label: isoform X6
Protein Domains
ARID

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311735 AgrOrtholog
BioCyc Gene G2FUF-3905 BioCyc
Ensembl Genes ENSRNOG00000000635 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000787.9 UniProtKB/TrEMBL
  ENSRNOT00000105517.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.60 UniProtKB/TrEMBL
InterPro ARID/SWI1_ChromRemod UniProtKB/TrEMBL
  ARID5B UniProtKB/TrEMBL
  ARID_dom UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/TrEMBL
KEGG Report rno:309728 UniProtKB/TrEMBL
NCBI Gene 309728 ENTREZGENE
PANTHER PTHR13964:SF37 UniProtKB/TrEMBL
  RBP-RELATED UniProtKB/TrEMBL
Pfam ARID UniProtKB/TrEMBL
PhenoGen Arid5b PhenoGen
PROSITE ARID UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000635 RatGTEx
SMART ARID UniProtKB/TrEMBL
  BRIGHT UniProtKB/TrEMBL
Superfamily-SCOP SSF46774 UniProtKB/TrEMBL
UniProt A0A8I6AEL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GGM4 ENTREZGENE, UniProtKB/TrEMBL
  A6JKU7 ENTREZGENE, UniProtKB/TrEMBL
  A6JKU8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Arid5b  AT-rich interaction domain 5B  Arid5b  AT rich interactive domain 5B (Mrf1 like)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Arid5b  AT rich interactive domain 5B (Mrf1 like)   Arid5b_predicted  AT rich interactive domain 5B (Mrf1 like) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Arid5b_predicted  AT rich interactive domain 5B (Mrf1 like) (predicted)      Symbol and Name status set to approved 70820 APPROVED