Mtch1 (mitochondrial carrier 1) - Rat Genome Database

Name: Mtch1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Mtch1 (mitochondrial carrier 1) Rattus norvegicus

Analyze

Symbol:

Mtch1

Name:

mitochondrial carrier 1

RGD ID:

1309262

Description:

Predicted to enable membrane insertase activity. Predicted to be involved in activation of cysteine-type endopeptidase activity involved in apoptotic process; positive regulation of apoptotic process; and protein insertion into mitochondrial outer membrane. Predicted to be active in membrane and mitochondrion. Orthologous to human MTCH1 (mitochondrial carrier 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; diazinon.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC294313; mitochondrial carrier homolog 1; mitochondrial carrier homolog 1 (C. elegans)

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MTCH1 (mitochondrial carrier 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Mtch1 (mitochondrial carrier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mtch1 (mitochondrial carrier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MTCH1 (mitochondrial carrier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MTCH1 (mitochondrial carrier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mtch1 (mitochondrial carrier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MTCH1 (mitochondrial carrier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MTCH1 (mitochondrial carrier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mtch1 (mitochondrial carrier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MTCH1 (mitochondrial carrier 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mtch1 (mitochondrial carrier 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mtch-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Mtch	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F43E2.11	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	7,389,942 - 7,413,426 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	7,389,949 - 7,413,426 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	8,100,918 - 8,116,465 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	20	7,462,777 - 7,478,324 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	20	7,934,718 - 7,950,248 (-)	NCBI	Rnor_WKY
Rnor_6.0	20	6,937,341 - 6,961,165 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	6,937,347 - 6,961,162 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	9,177,057 - 9,200,881 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	7,649,782 - 7,673,289 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	7,650,009 - 7,673,543 (-)	NCBI
Celera	20	8,935,505 - 8,956,541 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

JMP syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

(S)-nicotine (ISO)

1,1,1-trichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chloropicrin (ISO)

choline (ISO)

diazinon (EXP)

dibutyl phthalate (EXP)

dieldrin (EXP)

disodium selenite (ISO)

divanadium pentaoxide (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

ivermectin (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

nickel dichloride (EXP)

nicotine (ISO)

p-toluidine (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

sodium arsenate (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

trovafloxacin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of cysteine-type endopeptidase activity involved in apoptotic process (ISO)

positive regulation of apoptotic process (IBA,ISO)

protein insertion into mitochondrial outer membrane (ISO)

Cellular Component

membrane (IBA)

mitochondrion (IBA,ISO)

Molecular Function

membrane insertase activity (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12377771	PMID:12477932	PMID:18614015

Genomics

Comparative Map Data

Mtch1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	7,389,942 - 7,413,426 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	7,389,949 - 7,413,426 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	8,100,918 - 8,116,465 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	20	7,462,777 - 7,478,324 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	20	7,934,718 - 7,950,248 (-)	NCBI	Rnor_WKY
Rnor_6.0	20	6,937,341 - 6,961,165 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	6,937,347 - 6,961,162 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	9,177,057 - 9,200,881 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	7,649,782 - 7,673,289 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	7,650,009 - 7,673,543 (-)	NCBI
Celera	20	8,935,505 - 8,956,541 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

MTCH1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	36,968,135 - 36,986,551 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	6	36,965,807 - 36,986,298 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	36,935,911 - 36,954,327 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	37,043,895 - 37,061,927 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	37,043,895 - 37,061,927	NCBI
Celera	6	38,490,892 - 38,508,924 (-)	NCBI		Celera
Cytogenetic Map	6	p21.2	ENTREZGENE
HuRef	6	36,654,248 - 36,672,674 (-)	NCBI		HuRef
CHM1_1	6	36,937,712 - 36,956,128 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	36,791,204 - 36,809,630 (-)	NCBI		T2T-CHM13v2.0

Mtch1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	29,551,050 - 29,566,921 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	29,551,046 - 29,566,908 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	29,332,076 - 29,347,947 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	29,332,072 - 29,347,934 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	29,469,021 - 29,484,849 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	29,059,088 - 29,074,916 (-)	NCBI		MGSCv36	mm8
Celera	17	29,874,292 - 29,890,013 (-)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI

Mtch1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	6,045,321 - 6,061,086 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	6,046,033 - 6,061,086 (+)	NCBI	ChiLan1.0	ChiLan1.0

MTCH1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	6	47,306,697 - 47,324,755 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	36,530,002 - 36,548,412 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	37,725,121 - 37,743,030 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

MTCH1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	6,033,915 - 6,047,881 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	6,033,921 - 6,050,993 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	6,051,738 - 6,070,611 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	6,382,004 - 6,400,870 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	6,377,729 - 6,402,305 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	6,036,687 - 6,055,534 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	6,116,127 - 6,134,986 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	6,214,525 - 6,233,383 (-)	NCBI		UU_Cfam_GSD_1.0

Mtch1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	41,490,083 - 41,507,560 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	22,452,954 - 22,470,881 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936476	22,452,670 - 22,470,147 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MTCH1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	32,617,426 - 32,635,575 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	32,617,426 - 32,635,575 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	37,520,860 - 37,539,012 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MTCH1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	35,156,085 - 35,174,480 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	35,156,285 - 35,175,980 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	36,905,806 - 36,924,210 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mtch1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	20,900,443 - 20,915,302 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	20,900,723 - 20,914,894 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mtch1
94 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	207
Count of miRNA genes:	148
Interacting mature miRNAs:	168
Transcripts:	ENSRNOT00000000635
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
1300152	Bp195	Blood pressure QTL 195	3.46		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	3621649	9243559	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3621649	10078919	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	4606607	17617956	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	4606607	17617956	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	6691706	17489458	Rat

Markers in Region

RH128600

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	7,390,001 - 7,390,569 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	162,662,613 - 162,663,181 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	169,333,521 - 169,334,088	NCBI	Rnor6.0
Rnor_6.0	20	6,937,401 - 6,937,968	NCBI	Rnor6.0
Rnor_5.0	20	9,177,117 - 9,177,684	UniSTS	Rnor5.0
Rnor_5.0	5	172,888,035 - 172,888,602	UniSTS	Rnor5.0
RGSC_v3.4	5	169,384,655 - 169,385,222	UniSTS	RGSC3.4
RGSC_v3.4	20	7,649,836 - 7,650,403	UniSTS	RGSC3.4
Celera	20	8,935,559 - 8,936,126	UniSTS
Celera	5	160,894,614 - 160,895,181	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC098813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000000635 ⟹ ENSRNOP00000000635

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	7,389,949 - 7,413,426 (-)	Ensembl
Rnor_6.0 Ensembl	20	6,937,347 - 6,961,162 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093164

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	6,944,152 - 6,957,146 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093172 ⟹ ENSRNOP00000076246

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	7,389,949 - 7,413,426 (-)	Ensembl
Rnor_6.0 Ensembl	20	6,937,961 - 6,960,481 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093697

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	6,941,794 - 6,957,095 (-)	Ensembl

RefSeq Acc Id:

NM_001100833 ⟹ NP_001094303

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	7,389,948 - 7,413,426 (-)	NCBI
Rnor_6.0	20	6,937,347 - 6,961,143 (-)	NCBI
Rnor_5.0	20	9,177,057 - 9,200,881 (-)	NCBI
RGSC_v3.4	20	7,649,782 - 7,673,289 (-)	RGD
Celera	20	8,935,505 - 8,956,541 (-)	RGD

Sequence:

show sequence

CTGGCGCCATGGGGGCCTCGGACCCGGAAGTGGCGCCTTGGGCTCCGGGCCGCGCCGCGGGGAT
GGCGGGAGCCGGAGCTGGTGCAGGAGCTCGGGGCGGCGCGCCGGCGGGAGTCGAGGCCCGCGCT
CGGGACCCGCCACCCGCGCACCGCGCGCACCCTCGCCATCCTCGGCCCGCGGCTCAGCCGTCGG
CGCGCAGGATGGACGGCGGCGCGGGCGTCCCGGGCTCCGGGGACAACGCCCCGACCACCGAGGC
GCTGTTTGTGGCGCTGGGCGCGGGCGTGACCGCTCTCAGCCACCCGCTGCTCTACGTGAAGCTG
CTGATCCAGGTGGGTCATGAGCCGATGCCCCCCACCCTTGGGACCAATGTGCTGGGGAGGAAAG
TCCTCTACCTGCCGAGCTTCTTCACCTATGCCAAGTACATTGTGCAGGTGGATGGGAAGATAGG
GTTGTTCCGGGGCCTGAGCCCCCGCCTGATGTCTAACGCCTTGTCCACTGTGACCCGGGGCAGC
ATGAAAAAGGTCTTCCCTCCAGACGAGATCGAGCAGGTTTCCAACAAGGATGACATGAAGACCT
CACTGAAGAAAGTTGTGAAGGAGACGTCCTATGAGATGATGATGCAGTGCGTGTCGCGCATGCT
GGCCCATCCCTTACATGTGATCTCGATGCGCTGCATGGTACAGTTCGTAGGACGTGAGGCCAAG
TACAGTGGCGTGCTGAGCTCCATTGGGAAGATTTTCAAGGAGGAGGGGCTGCTGGGATTCTTCG
TCGGCTTAATCCCTCACCTCCTGGGCGATGTGGTTTTCTTGTGGGGCTGTAACCTGCTGGCCCA
CTTCATCAATGCCTACTTGGTGGACGACAGCGTGAGTGACACCCCAGGGGGGCTGGGAAACGAC
CAGAATCCAGGTTCCCAGTTCAGCCAGGCCCTGGCCATCCGGAGCTATACCAAGTTTGCGATGG
GGATTGCAGTGAGCATGCTGACCTATCCCTTCCTGCTCGTTGGAGATCTCATGGCAGTAAACAA
CTGTGGACTGCAGGCTGGACTCCCTCCGTATTCCCCTGTGTTTAAGTCCTGGATCCACTGCTGG
AAGTACTTGAGTGTGCAGGGCCAGCTCTTCCGTGGCTCTAGCCTGCTTTTCCGCCGGGTGTCAT
CAGGGTCGTGCTTTGCCCTGGAGTAACCTAAGTCTCCCGACCAAACATTTATGGGGTCTTGGCC
TACCCCTGGTGAGGACCCATCATCTCAGACGCCTGAGGGTGACTCCAGCACAGCCTGGCTTCGT
GTCCATATTTTTCATGTGTCTGTCCACATGTGGGCTGGTGGAGGTGGGTCACCTGGGGGAGCCT
GGGAGAGCAGTGTTGGTGGCATCCCCTTCCTGCCCAGAGGTCCTTGAGTCTCCATCTTGTACAC
GGGCAGAGGAAGGCTGCAGAGGCAAAGGTCACTCCAAGGCATCCCTGCACCTTCAGCCCAGCTC
ATCCTGCCAGTCAGCCGGAAGCACCCCCTCCTGCTTTGTAAATAGGGCACCGTCAAGCCTGGGC
CTGGGCCGGGGGCTGGCGTTGCTGCGTTCTGCCCTTGTTCTCAACACTACTTTCCTGACACAAG
GGCGGCGCCTCCTCCTGTGTGACTCCTCAGAATGTCCCCCCTCATCCTCTTGTCTGTGCCGGTG
ACACTGGGCATGAAGGTTCACTCACCCGTGCAGTTACGCACAGGTCACATAGGCCGCCATCTAG
TCCTCCCCTCGTGGTAAGATAGACACATCTCCTCGAATAAATGTATTGGTAACGAAAAAAAAAA
AAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256184 ⟹ XP_006256246

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	7,389,942 - 7,413,418 (-)	NCBI
Rnor_6.0	20	6,937,341 - 6,961,165 (-)	NCBI
Rnor_5.0	20	9,177,057 - 9,200,881 (-)	NCBI

Sequence:

show sequence

TGACGGGGAGTGACCTCCACGCCTGGCGCCATGGGGGCCTCGGACCCGGAAGTGGCGCCTTGGG
CTCCGGGCCGCGCCGCGGGGATGGCGGGAGCCGGAGCTGGTGCAGGAGCTCGGGGCGGCGCGCC
GGCGGGAGTCGAGGCCCGCGCTCGGGACCCGCCACCCGCGCACCGCGCGCACCCTCGCCATCCT
CGGCCCGCGGCTCAGCCGTCGGCGCGCAGGATGGACGGCGGCGCGGGCGTCCCGGGCTCCGGGG
ACAACGCCCCGACCACCGAGGCGCTGTTTGTGGCGCTGGGCGCGGGCGTGACCGCTCTCAGCCA
CCCGCTGCTCTACGTGAAGCTGCTGATCCAGGTGGGTCATGAGCCGATGCCCCCCACCCTTGGG
ACCAATGTGCTGGGGAGGAAAGTCCTCTACCTGCCGAGCTTCTTCACCTATGCCAAGTACATTG
TGCAGGTGGATGGGAAGATAGGGTTGTTCCGGGGCCTGAGCCCCCGCCTGATGTCTAACGCCTT
GTCCACTGTGACCCGGGGCAGCATGAAAAAGGTCTTCCCTCCAGACGAGATCGAGCAGGTTTCC
AACAAGGATGACATGAAGACCTCACTGAAGAAAGTTGTGAAGGAGACGTCCTATGAGATGATGA
TGCAGTGCGTGTCGCGCATGCTGGCCCATCCCTTACATGTGATCTCGATGCGCTGCATGGTACA
GTTCGTAGGACGTGAGGCCAAGTACAGTGGCGTGCTGAGCTCCATTGGGAAGATTTTCAAGGAG
GAGGGGCTGCTGGGATTCTTCGTCGGCTTAATCCCTCACCTCCTGGGCGATGTGGTTTTCTTGT
GGGGCTGTAACCTGCTGGCCCACTTCATCAATGCCTACTTGGTGGACGACAGCTTCAGCCAGGC
CCTGGCCATCCGGAGCTATACCAAGTTTGCGATGGGGATTGCAGTGAGCATGCTGACCTATCCC
TTCCTGCTCGTTGGAGATCTCATGGCAGTAAACAACTGTGGACTGCAGGCTGGACTCCCTCCGT
ATTCCCCTGTGTTTAAGTCCTGGATCCACTGCTGGAAGTACTTGAGTGTGCAGGGCCAGCTCTT
CCGTGGCTCTAGCCTGCTTTTCCGCCGGGTGTCATCAGGGTCGTGCTTTGCCCTGGAGTAACCT
AAGTCTCCCGACCAAACATTTATGGGGTCTTGGCCTACCCCTGGTGAGGACCCATCATCTCAGA
CGCCTGAGGGTGACTCCAGCACAGCCTGGCTTCGTGTCCATATTTTTCATGTGTCTGTCCACAT
GTGGGCTGGTGGAGGTGGGTCACCTGGGGGAGCCTGGGAGAGCAGTGTTGGTGGCATCCCCTTC
CTGCCCAGAGGTCCTTGAGTCTCCATCTTGTACACGGGCAGAGGAAGGCTGCAGAGGCAAAGGT
CACTCCAAGGCATCCCTGCACCTTCAGCCCAGCTCATCCTGCCAGTCAGCCGGAAGCACCCCCT
CCTGCTTTGTAAATAGGGCACCGTCAAGCCTGGGCCTGGGCCGGGGGCTGGCGTTGCTGCGTTC
TGCCCTTGTTCTCAACACTACTTTCCTGACACAAGGGCGGCGCCTCCTCCTGTGTGACTCCTCA
GAATGTCCCCCCTCATCCTCTTGTCTGTGCCGGTGACACTGGGCATGAAGGTTCACTCACCCGT
GCAGTTACGCACAGGTCACATAGGCCGCCATCTAGTCCTCCCCTCGTGGTAAGATAGACACATC
TCCTCGAATAAATGTATTGGTAACGATTTGGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001094303	(Get FASTA)	NCBI Sequence Viewer
	XP_006256246	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98813	(Get FASTA)	NCBI Sequence Viewer
	AAI58662	(Get FASTA)	NCBI Sequence Viewer
	EDL96963	(Get FASTA)	NCBI Sequence Viewer
	EDL96964	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001094303 ⟸ NM_001100833

- UniProtKB:

B0BN30 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGASDPEVAPWAPGRAAGMAGAGAGAGARGGAPAGVEARARDPPPAHRAHPRHPRPAAQPSARR
MDGGAGVPGSGDNAPTTEALFVALGAGVTALSHPLLYVKLLIQVGHEPMPPTLGTNVLGRKVLY
LPSFFTYAKYIVQVDGKIGLFRGLSPRLMSNALSTVTRGSMKKVFPPDEIEQVSNKDDMKTSLK
KVVKETSYEMMMQCVSRMLAHPLHVISMRCMVQFVGREAKYSGVLSSIGKIFKEEGLLGFFVGL
IPHLLGDVVFLWGCNLLAHFINAYLVDDSVSDTPGGLGNDQNPGSQFSQALAIRSYTKFAMGIA
VSMLTYPFLLVGDLMAVNNCGLQAGLPPYSPVFKSWIHCWKYLSVQGQLFRGSSLLFRRVSSGS
CFALE

hide sequence

RefSeq Acc Id:

XP_006256246 ⟸ XM_006256184

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGASDPEVAPWAPGRAAGMAGAGAGAGARGGAPAGVEARARDPPPAHRAHPRHPRPAAQPSARR
MDGGAGVPGSGDNAPTTEALFVALGAGVTALSHPLLYVKLLIQVGHEPMPPTLGTNVLGRKVLY
LPSFFTYAKYIVQVDGKIGLFRGLSPRLMSNALSTVTRGSMKKVFPPDEIEQVSNKDDMKTSLK
KVVKETSYEMMMQCVSRMLAHPLHVISMRCMVQFVGREAKYSGVLSSIGKIFKEEGLLGFFVGL
IPHLLGDVVFLWGCNLLAHFINAYLVDDSFSQALAIRSYTKFAMGIAVSMLTYPFLLVGDLMAV
NNCGLQAGLPPYSPVFKSWIHCWKYLSVQGQLFRGSSLLFRRVSSGSCFALE

hide sequence

RefSeq Acc Id:

ENSRNOP00000000635 ⟸ ENSRNOT00000000635

RefSeq Acc Id:

ENSRNOP00000076246 ⟸ ENSRNOT00000093172

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BN30-F1-model_v2	AlphaFold	B0BN30	1-389	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701447

Promoter ID:

EPDNEW_R11969

Type:

initiation region

Name:

Mtch1_1

Description:

mitochondrial carrier 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	6,961,109 - 6,961,169	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309262	AgrOrtholog
BioCyc Gene	G2FUF-4377	BioCyc
Ensembl Genes	ENSRNOG00000000527	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000000635	ENTREZGENE
	ENSRNOP00000000635.4	UniProtKB/TrEMBL
	ENSRNOP00000076246.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000000635	ENTREZGENE
	ENSRNOT00000000635.7	UniProtKB/TrEMBL
	ENSRNOT00000093172.2	UniProtKB/TrEMBL
Gene3D-CATH	1.50.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7377090	IMAGE-MGC_LOAD
	IMAGE:8369713	IMAGE-MGC_LOAD
InterPro	Mitochondrial_sb/sol_carrier	UniProtKB/TrEMBL
	Mt_carrier_dom	UniProtKB/TrEMBL
KEGG Report	rno:294313	UniProtKB/TrEMBL
MGC_CLONE	MGC:112857	IMAGE-MGC_LOAD
	MGC:187651	IMAGE-MGC_LOAD
NCBI Gene	294313	ENTREZGENE
PANTHER	MITOCHONDRIAL CARRIER HOMOLOG	UniProtKB/TrEMBL
	MITOCHONDRIAL CARRIER HOMOLOG 1	UniProtKB/TrEMBL
Pfam	Mito_carr	UniProtKB/TrEMBL
PhenoGen	Mtch1	PhenoGen
PROSITE	SOLCAR	UniProtKB/TrEMBL
Superfamily-SCOP	Mitoch_carrier	UniProtKB/TrEMBL
UniProt	A0A1W2Q6G8_RAT	UniProtKB/TrEMBL
	B0BN30	ENTREZGENE, UniProtKB/TrEMBL
	Q4G025_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Mtch1	mitochondrial carrier 1	Mtch1	mitochondrial carrier homolog 1 (C. elegans)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Mtch1	mitochondrial carrier homolog 1 (C. elegans)	Mtch1_predicted	mitochondrial carrier homolog 1 (C. elegans) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Mtch1_predicted	mitochondrial carrier homolog 1 (C. elegans) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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