Clic1 (chloride intracellular channel 1) - Rat Genome Database

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Gene: Clic1 (chloride intracellular channel 1) Rattus norvegicus
Analyze
Symbol: Clic1
Name: chloride intracellular channel 1
RGD ID: 1303043
Description: Predicted to enable chloride channel activity. Predicted to be involved in chloride transport and platelet aggregation. Predicted to act upstream of or within positive regulation of osteoblast differentiation and regulation of mitochondrial membrane potential. Predicted to be located in several cellular components, including extracellular exosome; nuclear envelope; and perinuclear region of cytoplasm. Predicted to be part of chloride channel complex. Predicted to be active in cytoplasm and membrane. Orthologous to human CLIC1 (chloride intracellular channel 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chloride intracellular channel protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,764,867 - 3,773,711 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,761,461 - 3,773,712 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,464,357 - 4,473,242 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0203,826,411 - 3,835,295 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0204,364,302 - 4,373,178 (-)NCBIRnor_WKY
Rnor_6.0205,040,314 - 5,049,166 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,040,337 - 5,049,166 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,113,249 - 7,122,096 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,498,935 - 3,842,500 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,499,166 - 3,842,700 (-)NCBI
Celera204,252,631 - 4,261,199 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-diisothiocyano-trans-stilbene-2,2'-disulfonic acid  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aconitine  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
clozapine  (ISO)
cocaine  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
coumarin  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP,ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP,ISO)
dihydroartemisinin  (ISO)
dopamine  (EXP)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
fenamidone  (ISO)
fenoldopam  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fonofos  (ISO)
fulvestrant  (ISO)
furan  (EXP)
glafenine  (EXP)
ivermectin  (ISO)
leflunomide  (ISO)
lovastatin  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nicotine  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
pentachlorophenol  (ISO)
resveratrol  (ISO)
Salinomycin  (ISO)
sodium dichromate  (EXP)
T-2 toxin  (EXP)
tamoxifen  (ISO)
terbufos  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vitamin E  (ISO)
warfarin  (ISO)
yohimbine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Involvement of the intracellular ion channel CLIC1 in microglia-mediated beta-amyloid-induced neurotoxicity. Novarino G, etal., J Neurosci 2004 Jun 9;24(23):5322-30.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9139710   PMID:10793131   PMID:12477932   PMID:12681486   PMID:15326289   PMID:16791210   PMID:19056867   PMID:19190083   PMID:19703605   PMID:19946888   PMID:20458337   PMID:22516433  
PMID:22664934   PMID:23376485   PMID:23382103   PMID:23533145   PMID:23743620   PMID:25468996   PMID:26777142  


Genomics

Comparative Map Data
Clic1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,764,867 - 3,773,711 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,761,461 - 3,773,712 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,464,357 - 4,473,242 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0203,826,411 - 3,835,295 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0204,364,302 - 4,373,178 (-)NCBIRnor_WKY
Rnor_6.0205,040,314 - 5,049,166 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,040,337 - 5,049,166 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,113,249 - 7,122,096 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,498,935 - 3,842,500 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,499,166 - 3,842,700 (-)NCBI
Celera204,252,631 - 4,261,199 (+)NCBICelera
Cytogenetic Map20p12NCBI
CLIC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,730,581 - 31,737,318 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl631,730,581 - 31,739,763 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,698,358 - 31,705,095 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,806,337 - 31,812,320 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,806,338 - 31,812,320NCBI
Celera633,296,583 - 33,302,566 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,484,582 - 31,490,568 (-)NCBIHuRef
CHM1_1631,700,475 - 31,706,458 (-)NCBICHM1_1
T2T-CHM13v2.0631,583,614 - 31,590,355 (-)NCBIT2T-CHM13v2.0
Clic1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,269,219 - 35,277,695 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,268,942 - 35,277,725 (+)EnsemblGRCm39 Ensembl
GRCm381735,050,243 - 35,058,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,049,966 - 35,058,749 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,187,188 - 35,195,664 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,658,299 - 34,666,775 (+)NCBIMGSCv36mm8
Celera1738,146,956 - 38,155,404 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.58NCBI
Clic1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437269,276 - 275,949 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437269,276 - 275,949 (-)NCBIChiLan1.0ChiLan1.0
CLIC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,280,645 - 32,286,621 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,280,645 - 32,286,621 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,391,958 - 31,397,920 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CLIC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,209,777 - 1,215,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,209,780 - 1,215,229 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,346,316 - 1,351,766 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,355,142 - 1,360,592 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,355,144 - 1,360,616 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,214,391 - 1,219,842 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,281,637 - 1,287,070 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,349,279 - 1,354,941 (-)NCBIUU_Cfam_GSD_1.0
Clic1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,757,960 - 35,763,366 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,797,966 - 1,803,401 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049367271,797,966 - 1,803,401 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLIC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16160,010,109 - 160,011,707 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26147,556,126 - 147,556,852 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLIC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,286,051 - 40,292,377 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,286,491 - 40,292,113 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604431,643,590 - 31,649,943 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clic1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,476,213 - 24,482,529 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,476,262 - 24,482,529 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Clic1
69 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:133
Interacting mature miRNAs:146
Transcripts:ENSRNOT00000068435
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2036216564606812Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat

Markers in Region
D20Mgh3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,417,756 - 3,417,890 (+)MAPPERmRatBN7.2
mRatBN7.2203,516,801 - 3,516,931 (+)MAPPERmRatBN7.2
Rnor_6.0204,931,692 - 4,931,821NCBIRnor6.0
Rnor_6.0204,638,390 - 4,638,523NCBIRnor6.0
Rnor_5.0206,718,432 - 6,718,565UniSTSRnor5.0
Rnor_5.0207,007,836 - 7,007,965UniSTSRnor5.0
RGSC_v3.4203,551,934 - 3,552,063UniSTSRGSC3.4
RGSC_v3.4203,430,123 - 3,430,256UniSTSRGSC3.4
Celera203,419,083 - 3,419,216UniSTS
RH 3.4 Map2052.52RGD
RH 2.0 Map2045.1RGD
Cytogenetic Map20p12UniSTS
D20Wox4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,417,761 - 3,417,890 (+)MAPPERmRatBN7.2
mRatBN7.2203,516,806 - 3,516,931 (+)MAPPERmRatBN7.2
Rnor_6.0204,931,697 - 4,931,821NCBIRnor6.0
Rnor_6.0204,638,395 - 4,638,523NCBIRnor6.0
Rnor_5.0207,007,841 - 7,007,965UniSTSRnor5.0
Rnor_5.0206,718,437 - 6,718,565UniSTSRnor5.0
RGSC_v3.4203,551,939 - 3,552,063UniSTSRGSC3.4
RGSC_v3.4203,430,123 - 3,430,251UniSTSRGSC3.4
RGSC_v3.1203,430,349 - 3,430,478RGD
Celera205,293,636 - 5,293,725UniSTS
Celera203,419,088 - 3,419,216UniSTS
RH 3.4 Map2051.4UniSTS
RH 3.4 Map2051.4RGD
RH 2.0 Map2039.4RGD
Cytogenetic Map20p12UniSTS
D20Wox3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,621,656 - 3,621,771 (+)MAPPERmRatBN7.2
mRatBN7.2203,621,656 - 3,621,771 (-)MAPPERmRatBN7.2
Rnor_6.0205,192,240 - 5,192,354NCBIRnor6.0
Rnor_6.0204,855,475 - 4,855,589NCBIRnor6.0
Rnor_5.0206,935,875 - 6,935,989UniSTSRnor5.0
RGSC_v3.4203,660,646 - 3,660,760UniSTSRGSC3.4
RGSC_v3.1203,660,872 - 3,660,987RGD
Celera204,403,718 - 4,403,832UniSTS
Cytogenetic Map20p12UniSTS
D20UW1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,621,649 - 3,621,791 (-)MAPPERmRatBN7.2
mRatBN7.2203,621,649 - 3,621,791 (+)MAPPERmRatBN7.2
Rnor_6.0205,192,220 - 5,192,361NCBIRnor6.0
Rnor_6.0204,855,468 - 4,855,609NCBIRnor6.0
Rnor_5.0206,935,868 - 6,936,009UniSTSRnor5.0
RGSC_v3.4203,660,638 - 3,660,780RGDRGSC3.4
RGSC_v3.4203,660,639 - 3,660,780UniSTSRGSC3.4
RGSC_v3.1203,660,865 - 3,661,007RGD
Celera204,403,698 - 4,403,839UniSTS
RH 3.4 Map2044.5RGD
RH 3.4 Map2044.5UniSTS
RH 2.0 Map2028.3RGD
SHRSP x BN Map200.0UniSTS
SHRSP x BN Map200.0RGD
FHH x ACI Map200.16RGD
Cytogenetic Map20p12UniSTS
D20Ztm1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,621,599 - 3,621,773 (+)MAPPERmRatBN7.2
mRatBN7.2203,621,599 - 3,621,773 (-)MAPPERmRatBN7.2
Rnor_6.0205,192,238 - 5,192,411NCBIRnor6.0
Rnor_6.0204,855,418 - 4,855,591NCBIRnor6.0
Rnor_5.0206,935,818 - 6,935,991UniSTSRnor5.0
RGSC_v3.4203,660,589 - 3,660,762UniSTSRGSC3.4
Celera204,403,716 - 4,403,889UniSTS
Cytogenetic Map20p12UniSTS
D20Wox23  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0206,994,638 - 6,994,850NCBIRnor5.0
Rnor_5.0206,969,406 - 6,969,629NCBIRnor5.0
RGSC_v3.4203,510,154 - 3,510,376UniSTSRGSC3.4
RGSC_v3.4203,536,556 - 3,536,767UniSTSRGSC3.4
Cytogenetic Map20p12UniSTS
D20Yum51  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,734,077 - 3,734,302 (-)MAPPERmRatBN7.2
Rnor_6.0205,079,724 - 5,079,944NCBIRnor6.0
Rnor_5.0207,152,654 - 7,152,874UniSTSRnor5.0
RGSC_v3.4203,797,746 - 3,797,966UniSTSRGSC3.4
Celera204,291,547 - 4,291,785UniSTS
Cytogenetic Map20p12UniSTS
D20Yum50  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,702,594 - 3,702,749 (-)MAPPERmRatBN7.2
Rnor_6.0205,111,274 - 5,111,428NCBIRnor6.0
Rnor_5.0207,184,533 - 7,184,687UniSTSRnor5.0
RGSC_v3.4203,766,249 - 3,766,403UniSTSRGSC3.4
Celera204,322,893 - 4,323,047UniSTS
Cytogenetic Map20p12UniSTS
D20Yum47  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,576,110 - 3,576,337 (+)MAPPERmRatBN7.2
Rnor_6.0204,809,696 - 4,809,922NCBIRnor6.0
Rnor_5.0206,890,096 - 6,890,322UniSTSRnor5.0
RGSC_v3.4203,614,716 - 3,614,942UniSTSRGSC3.4
Celera204,449,105 - 4,449,331UniSTS
Cytogenetic Map20p12UniSTS
D20Yum49  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,647,335 - 3,647,520 (-)MAPPERmRatBN7.2
Rnor_6.0205,166,500 - 5,166,684NCBIRnor6.0
Rnor_5.0207,239,759 - 7,239,943UniSTSRnor5.0
RGSC_v3.4203,710,993 - 3,711,177UniSTSRGSC3.4
Celera204,378,277 - 4,378,461UniSTS
Cytogenetic Map20p12UniSTS
D20Yum48  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,626,827 - 3,627,019 (+)MAPPERmRatBN7.2
mRatBN7.2203,626,827 - 3,627,019 (-)MAPPERmRatBN7.2
Rnor_6.0205,186,993 - 5,187,184NCBIRnor6.0
Rnor_6.0204,860,645 - 4,860,836NCBIRnor6.0
Rnor_5.0206,941,045 - 6,941,236UniSTSRnor5.0
RGSC_v3.4203,665,816 - 3,666,007UniSTSRGSC3.4
Celera204,398,471 - 4,398,662UniSTS
Cytogenetic Map20p12UniSTS
D20Yum52  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,750,098 - 3,750,321 (-)MAPPERmRatBN7.2
Rnor_6.0205,063,709 - 5,063,931NCBIRnor6.0
Rnor_5.0207,136,639 - 7,136,861UniSTSRnor5.0
RGSC_v3.4203,813,787 - 3,814,009UniSTSRGSC3.4
Celera204,275,821 - 4,276,043UniSTS
Cytogenetic Map20p12UniSTS
Bat1_microsatellite  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,572,729 - 3,572,876 (+)MAPPERmRatBN7.2
Rnor_6.0204,806,315 - 4,806,461NCBIRnor6.0
Rnor_5.0206,886,715 - 6,886,861UniSTSRnor5.0
RGSC_v3.4203,611,335 - 3,611,481UniSTSRGSC3.4
Celera204,452,559 - 4,452,705UniSTS
Cytogenetic Map20p12UniSTS
AI113237  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,620,478 - 3,620,693 (+)MAPPERmRatBN7.2
mRatBN7.2203,620,478 - 3,620,693 (-)MAPPERmRatBN7.2
Rnor_6.0205,193,318 - 5,193,532NCBIRnor6.0
Rnor_6.0204,854,297 - 4,854,511NCBIRnor6.0
Rnor_5.0206,934,697 - 6,934,911UniSTSRnor5.0
RGSC_v3.4203,659,468 - 3,659,682UniSTSRGSC3.4
Celera204,404,796 - 4,405,010UniSTS
Cytogenetic Map20p12UniSTS
PMC112151P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,623,059 - 3,623,529 (+)MAPPERmRatBN7.2
mRatBN7.2203,623,059 - 3,623,529 (-)MAPPERmRatBN7.2
Rnor_6.0205,190,482 - 5,190,951NCBIRnor6.0
Rnor_6.0204,856,878 - 4,857,347NCBIRnor6.0
Rnor_5.0206,937,278 - 6,937,747UniSTSRnor5.0
RGSC_v3.4203,662,049 - 3,662,518UniSTSRGSC3.4
Celera204,401,960 - 4,402,429UniSTS
Cytogenetic Map20p12UniSTS
PMC116546P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,623,530 - 3,623,701 (+)MAPPERmRatBN7.2
mRatBN7.2203,623,530 - 3,623,701 (-)MAPPERmRatBN7.2
Rnor_6.0205,190,310 - 5,190,480NCBIRnor6.0
Rnor_6.0204,857,349 - 4,857,519NCBIRnor6.0
Rnor_5.0206,937,749 - 6,937,919UniSTSRnor5.0
RGSC_v3.4203,662,520 - 3,662,690UniSTSRGSC3.4
Celera204,401,788 - 4,401,958UniSTS
Cytogenetic Map20p12UniSTS
RH138896  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,727,525 - 3,727,645 (-)MAPPERmRatBN7.2
Rnor_6.0205,086,381 - 5,086,500NCBIRnor6.0
Rnor_5.0207,159,639 - 7,159,758UniSTSRnor5.0
RGSC_v3.4203,791,194 - 3,791,313UniSTSRGSC3.4
Celera204,298,222 - 4,298,341UniSTS
RH 3.4 Map2052.52UniSTS
Cytogenetic Map20p12UniSTS
AA900379  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,676,386 - 3,676,977 (-)MAPPERmRatBN7.2
Rnor_6.0205,137,045 - 5,137,635NCBIRnor6.0
Rnor_5.0207,210,304 - 7,210,894UniSTSRnor5.0
RGSC_v3.4203,740,042 - 3,740,632UniSTSRGSC3.4
Celera204,348,665 - 4,349,255UniSTS
RH 3.4 Map2053.1UniSTS
Cytogenetic Map20p12UniSTS
Tnf  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4203,662,374 - 3,662,767UniSTSRGSC3.4
RGSC_v3.4203,661,240 - 3,662,597UniSTSRGSC3.4
Celera204,401,711 - 4,402,104UniSTS
RH127662  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,627,637 - 3,627,847 (+)MAPPERmRatBN7.2
mRatBN7.2203,627,637 - 3,627,847 (-)MAPPERmRatBN7.2
Rnor_6.0205,186,165 - 5,186,374NCBIRnor6.0
Rnor_6.0204,861,455 - 4,861,664NCBIRnor6.0
Rnor_5.0206,941,855 - 6,942,064UniSTSRnor5.0
RGSC_v3.4203,666,626 - 3,666,835UniSTSRGSC3.4
Celera204,397,643 - 4,397,852UniSTS
RH 3.4 Map2051.3UniSTS
Cytogenetic Map20p12UniSTS
RH128085  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,761,504 - 3,761,717 (-)MAPPERmRatBN7.2
Rnor_6.0205,052,316 - 5,052,528NCBIRnor6.0
Rnor_5.0207,125,246 - 7,125,458UniSTSRnor5.0
RGSC_v3.4203,829,812 - 3,830,024UniSTSRGSC3.4
Celera204,264,346 - 4,264,558UniSTS
RH 3.4 Map2049.3UniSTS
Cytogenetic Map20p12UniSTS
RH129972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,705,110 - 3,705,300 (-)MAPPERmRatBN7.2
Rnor_6.0205,108,723 - 5,108,912NCBIRnor6.0
Rnor_5.0207,181,982 - 7,182,171UniSTSRnor5.0
RGSC_v3.4203,768,765 - 3,768,954UniSTSRGSC3.4
Celera204,320,342 - 4,320,531UniSTS
Cytogenetic Map20p12UniSTS
RH132137  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,697,727 - 3,697,924 (-)MAPPERmRatBN7.2
Rnor_6.0205,116,099 - 5,116,295NCBIRnor6.0
Rnor_5.0207,189,358 - 7,189,554UniSTSRnor5.0
RGSC_v3.4203,761,382 - 3,761,578UniSTSRGSC3.4
Celera204,327,718 - 4,327,914UniSTS
RH 3.4 Map2051.2UniSTS
Cytogenetic Map20p12UniSTS
RH132872  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,638,475 - 3,638,774 (-)MAPPERmRatBN7.2
Rnor_6.0205,175,239 - 5,175,537NCBIRnor6.0
Rnor_5.0207,248,505 - 7,248,803UniSTSRnor5.0
RGSC_v3.4203,702,043 - 3,702,341UniSTSRGSC3.4
Celera204,387,042 - 4,387,340UniSTS
RH 3.4 Map2051.3UniSTS
Cytogenetic Map20p12UniSTS
RH133704  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,719,130 - 3,719,391 (-)MAPPERmRatBN7.2
Rnor_6.0205,094,633 - 5,094,893NCBIRnor6.0
Rnor_5.0207,167,891 - 7,168,151UniSTSRnor5.0
RGSC_v3.4203,782,801 - 3,783,061UniSTSRGSC3.4
Celera204,306,475 - 4,306,735UniSTS
RH 3.4 Map2053.02UniSTS
Cytogenetic Map20p12UniSTS
RH94729  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,624,197 - 3,624,375 (+)MAPPERmRatBN7.2
mRatBN7.2203,624,197 - 3,624,375 (-)MAPPERmRatBN7.2
Rnor_6.0205,189,636 - 5,189,813NCBIRnor6.0
Rnor_6.0204,858,016 - 4,858,193NCBIRnor6.0
Rnor_5.0206,938,416 - 6,938,593UniSTSRnor5.0
RGSC_v3.4203,663,187 - 3,663,364UniSTSRGSC3.4
Celera204,401,114 - 4,401,291UniSTS
Cytogenetic Map20p12UniSTS
RH94730  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,621,658 - 3,621,793 (+)MAPPERmRatBN7.2
mRatBN7.2203,621,658 - 3,621,793 (-)MAPPERmRatBN7.2
Rnor_6.0205,192,218 - 5,192,352NCBIRnor6.0
Rnor_6.0204,855,477 - 4,855,611NCBIRnor6.0
Rnor_5.0206,935,877 - 6,936,011UniSTSRnor5.0
RGSC_v3.4203,660,648 - 3,660,782UniSTSRGSC3.4
Celera204,403,696 - 4,403,830UniSTS
Cytogenetic Map20p12UniSTS
RH94817  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,622,694 - 3,623,024 (+)MAPPERmRatBN7.2
mRatBN7.2203,622,694 - 3,623,024 (-)MAPPERmRatBN7.2
Rnor_6.0205,190,987 - 5,191,316NCBIRnor6.0
Rnor_6.0204,856,513 - 4,856,842NCBIRnor6.0
Rnor_5.0206,936,913 - 6,937,242UniSTSRnor5.0
RGSC_v3.4203,661,684 - 3,662,013UniSTSRGSC3.4
Celera204,402,465 - 4,402,794UniSTS
RH 3.4 Map2051.3UniSTS
Cytogenetic Map20p12UniSTS
RH143921  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,437,218 - 3,437,388 (+)MAPPERmRatBN7.2
mRatBN7.2203,504,546 - 3,504,716 (+)MAPPERmRatBN7.2
Rnor_6.0204,921,406 - 4,921,575NCBIRnor6.0
Rnor_6.0204,698,779 - 4,698,948NCBIRnor6.0
Rnor_5.0206,997,550 - 6,997,719UniSTSRnor5.0
Rnor_5.0206,779,353 - 6,779,522UniSTSRnor5.0
RGSC_v3.4203,539,679 - 3,539,848UniSTSRGSC3.4
Celera203,422,784 - 3,422,946UniSTS
Celera203,626,888 - 3,627,057UniSTS
Celera202,974,135 - 2,974,304UniSTS
RH 3.4 Map2054.73UniSTS
Cytogenetic Map20p12UniSTS
RH144334  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,572,601 - 3,572,969 (+)MAPPERmRatBN7.2
Rnor_6.0204,806,187 - 4,806,554NCBIRnor6.0
Rnor_5.0206,886,587 - 6,886,954UniSTSRnor5.0
RGSC_v3.4203,611,207 - 3,611,574UniSTSRGSC3.4
Celera204,452,466 - 4,452,833UniSTS
RH 3.4 Map2050.5UniSTS
Cytogenetic Map20p12UniSTS
BE098892  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,688,930 - 3,689,103 (-)MAPPERmRatBN7.2
Rnor_6.0205,124,920 - 5,125,092NCBIRnor6.0
Rnor_5.0207,198,179 - 7,198,351UniSTSRnor5.0
RGSC_v3.4203,752,585 - 3,752,757UniSTSRGSC3.4
Celera204,336,540 - 4,336,712UniSTS
RH 3.4 Map2051.6UniSTS
Cytogenetic Map20p12UniSTS
AA997909  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,605,451 - 3,605,583 (+)MAPPERmRatBN7.2
Rnor_6.0204,839,037 - 4,839,168NCBIRnor6.0
Rnor_5.0206,919,437 - 6,919,568UniSTSRnor5.0
RGSC_v3.4203,644,057 - 3,644,188UniSTSRGSC3.4
Celera204,419,858 - 4,419,989UniSTS
RH 3.4 Map2051.1UniSTS
Cytogenetic Map20p12UniSTS
RH135060  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,745,135 - 3,745,327 (-)MAPPERmRatBN7.2
Rnor_6.0205,068,704 - 5,068,895NCBIRnor6.0
Rnor_5.0207,141,634 - 7,141,825UniSTSRnor5.0
RGSC_v3.4203,808,844 - 3,809,035UniSTSRGSC3.4
Celera204,280,656 - 4,280,847UniSTS
RH 3.4 Map2052.3UniSTS
Cytogenetic Map20p12UniSTS
RH135373  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,651,910 - 3,652,637 (-)MAPPERmRatBN7.2
Rnor_6.0205,161,383 - 5,162,109NCBIRnor6.0
Rnor_5.0207,234,642 - 7,235,368UniSTSRnor5.0
RGSC_v3.4203,715,568 - 3,716,294UniSTSRGSC3.4
Celera204,373,160 - 4,373,886UniSTS
RH 3.4 Map2053.6UniSTS
Cytogenetic Map20p12UniSTS
RH137048  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,705,115 - 3,705,301 (-)MAPPERmRatBN7.2
Rnor_6.0205,108,722 - 5,108,907NCBIRnor6.0
Rnor_5.0207,181,981 - 7,182,166UniSTSRnor5.0
RGSC_v3.4203,768,770 - 3,768,955UniSTSRGSC3.4
Celera204,320,341 - 4,320,526UniSTS
RH 3.4 Map2052.22UniSTS
Cytogenetic Map20p12UniSTS
RH138655  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,624,360 - 3,624,532 (+)MAPPERmRatBN7.2
mRatBN7.2203,624,360 - 3,624,532 (-)MAPPERmRatBN7.2
Rnor_6.0205,189,479 - 5,189,650NCBIRnor6.0
Rnor_6.0204,858,179 - 4,858,350NCBIRnor6.0
Rnor_5.0206,938,579 - 6,938,750UniSTSRnor5.0
RGSC_v3.4203,663,350 - 3,663,521UniSTSRGSC3.4
Celera204,400,957 - 4,401,128UniSTS
RH 3.4 Map2050.9UniSTS
Cytogenetic Map20p12UniSTS
RH139920  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,760,808 - 3,761,023 (-)MAPPERmRatBN7.2
Rnor_6.0205,053,010 - 5,053,224NCBIRnor6.0
Rnor_5.0207,125,940 - 7,126,154UniSTSRnor5.0
RGSC_v3.4203,829,116 - 3,829,330UniSTSRGSC3.4
Celera204,265,040 - 4,265,254UniSTS
Cytogenetic Map20p12UniSTS
RH142043  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,693,748 - 3,693,954 (-)MAPPERmRatBN7.2
Rnor_6.0205,120,069 - 5,120,274NCBIRnor6.0
Rnor_5.0207,193,328 - 7,193,533UniSTSRnor5.0
RGSC_v3.4203,757,403 - 3,757,608UniSTSRGSC3.4
Celera204,331,688 - 4,331,893UniSTS
RH 3.4 Map2051.3UniSTS
Cytogenetic Map20p12UniSTS
AI177560  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,444,717 - 3,445,771 (+)MAPPERmRatBN7.2
Rnor_6.0202,647,960 - 2,649,014NCBIRnor6.0
Rnor_5.0204,750,829 - 4,751,883UniSTSRnor5.0
RGSC_v3.4203,521,954 - 3,523,017UniSTSRGSC3.4
RGSC_v3.4203,462,254 - 3,463,316UniSTSRGSC3.4
Celera205,759,769 - 5,760,832UniSTS
Celera202,981,634 - 2,982,687UniSTS
RH 3.4 Map2015.8UniSTS
Cytogenetic Map20p12UniSTS
BQ194350  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,381,539 - 3,381,705 (+)MAPPERmRatBN7.2
mRatBN7.2203,481,255 - 3,481,421 (+)MAPPERmRatBN7.2
Rnor_6.0204,898,833 - 4,898,998NCBIRnor6.0
Rnor_6.020158,913 - 159,078NCBIRnor6.0
Rnor_5.0206,974,977 - 6,975,142UniSTSRnor5.0
Rnor_5.020160,095 - 160,260UniSTSRnor5.0
RGSC_v3.4203,467,198 - 3,467,363UniSTSRGSC3.4
RGSC_v3.4203,515,574 - 3,515,739UniSTSRGSC3.4
Celera204,695,194 - 4,695,359UniSTS
Celera203,383,388 - 3,383,553UniSTS
RH 3.4 Map2052.3UniSTS
Cytogenetic Map20p12UniSTS
PMC26794P3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,623,058 - 3,623,730 (+)MAPPERmRatBN7.2
mRatBN7.2203,623,058 - 3,623,730 (-)MAPPERmRatBN7.2
Rnor_6.0205,190,281 - 5,190,952NCBIRnor6.0
Rnor_6.0204,856,877 - 4,857,548NCBIRnor6.0
Rnor_5.0206,937,277 - 6,937,948UniSTSRnor5.0
RGSC_v3.4203,662,048 - 3,662,719UniSTSRGSC3.4
Celera204,401,759 - 4,402,430UniSTS
Cytogenetic Map20p12UniSTS
MARC_3347-3348:991937077:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,704,062 - 3,705,128 (-)MAPPERmRatBN7.2
Rnor_6.0205,108,895 - 5,109,960NCBIRnor6.0
Rnor_5.0207,182,154 - 7,183,219UniSTSRnor5.0
RGSC_v3.4203,767,717 - 3,768,782UniSTSRGSC3.4
Celera204,320,514 - 4,321,579UniSTS
Cytogenetic Map20p12UniSTS
RH126866  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,679,816 - 3,680,353 (-)MAPPERmRatBN7.2
Rnor_6.0205,133,669 - 5,134,205NCBIRnor6.0
Rnor_5.0207,206,928 - 7,207,464UniSTSRnor5.0
RGSC_v3.4203,743,472 - 3,744,008UniSTSRGSC3.4
Celera204,345,289 - 4,345,825UniSTS
Cytogenetic Map20p12UniSTS
RH126881  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,572,569 - 3,572,935 (+)MAPPERmRatBN7.2
Rnor_6.0204,806,155 - 4,806,520NCBIRnor6.0
Rnor_5.0206,886,555 - 6,886,920UniSTSRnor5.0
RGSC_v3.4203,611,175 - 3,611,540UniSTSRGSC3.4
Celera204,452,500 - 4,452,865UniSTS
Cytogenetic Map20p12UniSTS
RH35871  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,677,835 - 3,678,288 (-)MAPPERmRatBN7.2
Rnor_6.0205,135,734 - 5,136,186NCBIRnor6.0
Rnor_5.0207,208,993 - 7,209,445UniSTSRnor5.0
RGSC_v3.4203,741,491 - 3,741,943UniSTSRGSC3.4
Celera204,347,354 - 4,347,806UniSTS
Cytogenetic Map20p12UniSTS
MARC_11957-11958:1003854518:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,662,991 - 3,663,548 (-)MAPPERmRatBN7.2
Rnor_6.0205,150,472 - 5,151,028NCBIRnor6.0
Rnor_5.0207,223,731 - 7,224,287UniSTSRnor5.0
RGSC_v3.4203,726,649 - 3,727,205UniSTSRGSC3.4
Celera204,362,093 - 4,362,649UniSTS
Cytogenetic Map20p12UniSTS
MARC_5045-5046:996690083:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,672,619 - 3,673,182 (-)MAPPERmRatBN7.2
Rnor_6.0205,140,838 - 5,141,400NCBIRnor6.0
Rnor_5.0207,214,097 - 7,214,659UniSTSRnor5.0
RGSC_v3.4203,736,277 - 3,736,839UniSTSRGSC3.4
Celera204,352,458 - 4,353,020UniSTS
Cytogenetic Map20p12UniSTS
MARC_5411-5412:996690356:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,676,381 - 3,676,960 (-)MAPPERmRatBN7.2
Rnor_6.0205,137,062 - 5,137,640NCBIRnor6.0
Rnor_5.0207,210,321 - 7,210,899UniSTSRnor5.0
RGSC_v3.4203,740,037 - 3,740,615UniSTSRGSC3.4
Celera204,348,682 - 4,349,260UniSTS
Cytogenetic Map20p12UniSTS
MARC_5857-5858:997299374:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,651,240 - 3,651,828 (-)MAPPERmRatBN7.2
Rnor_6.0205,162,192 - 5,162,779NCBIRnor6.0
Rnor_5.0207,235,451 - 7,236,038UniSTSRnor5.0
RGSC_v3.4203,714,898 - 3,715,485UniSTSRGSC3.4
Celera204,373,969 - 4,374,556UniSTS
Cytogenetic Map20p12UniSTS
UniSTS:463959  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,622,863 - 3,623,794 (+)MAPPERmRatBN7.2
mRatBN7.2203,622,863 - 3,623,794 (-)MAPPERmRatBN7.2
Rnor_6.0205,190,217 - 5,191,147NCBIRnor6.0
Rnor_6.0204,856,682 - 4,857,612NCBIRnor6.0
Rnor_5.0206,937,082 - 6,938,012UniSTSRnor5.0
RGSC_v3.4203,661,853 - 3,662,783UniSTSRGSC3.4
Celera204,401,695 - 4,402,625UniSTS
Cytogenetic Map20p12UniSTS
UniSTS:498506  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,745,187 - 3,745,935 (-)MAPPERmRatBN7.2
Rnor_6.0205,068,096 - 5,068,843NCBIRnor6.0
Rnor_5.0207,141,026 - 7,141,773UniSTSRnor5.0
RGSC_v3.4203,808,896 - 3,809,643UniSTSRGSC3.4
Celera204,280,048 - 4,280,795UniSTS
Cytogenetic Map20p12UniSTS
Clic1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,765,025 - 3,765,180 (-)MAPPERmRatBN7.2
Rnor_6.0205,048,853 - 5,049,007NCBIRnor6.0
Rnor_5.0207,121,783 - 7,121,937UniSTSRnor5.0
RGSC_v3.4203,499,094 - 3,499,248UniSTSRGSC3.4
Celera204,260,886 - 4,261,040UniSTS
Cytogenetic Map20p12UniSTS
Aif1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,651,059 - 3,651,818 (-)MAPPERmRatBN7.2
Rnor_6.0205,162,202 - 5,162,960NCBIRnor6.0
Rnor_5.0207,235,461 - 7,236,219UniSTSRnor5.0
RGSC_v3.4203,714,717 - 3,715,475UniSTSRGSC3.4
Celera204,373,979 - 4,374,737UniSTS
Cytogenetic Map20p12UniSTS
Tnf  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0206,937,603 - 6,937,996UniSTSRnor5.0
RGSC_v3.4203,662,374 - 3,662,767UniSTSRGSC3.4
Celera204,401,711 - 4,402,104UniSTS
Cytogenetic Map20p12UniSTS
Tnf  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0206,936,469 - 6,937,826UniSTSRnor5.0
RGSC_v3.4203,661,240 - 3,662,597UniSTSRGSC3.4
Cytogenetic Map20p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 51 35 19 35 4 7 67 35 36 11 4
Low 6 6 6 4 4 7 5 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001002807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC094348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX883045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU148064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM067949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM115459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000001118   ⟹   ENSRNOP00000001118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,761,461 - 3,765,260 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000068435   ⟹   ENSRNOP00000060240
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,764,865 - 3,772,168 (-)Ensembl
Rnor_6.0 Ensembl205,040,337 - 5,049,166 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098310   ⟹   ENSRNOP00000087153
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,764,865 - 3,772,703 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099306   ⟹   ENSRNOP00000088455
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,764,865 - 3,773,712 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101151   ⟹   ENSRNOP00000091609
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,764,867 - 3,773,301 (-)Ensembl
RefSeq Acc Id: NM_001002807   ⟹   NP_001002807
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,764,867 - 3,773,711 (-)NCBI
Rnor_6.0205,040,319 - 5,049,166 (+)NCBI
Rnor_5.0207,113,249 - 7,122,096 (+)NCBI
RGSC_v3.4203,498,935 - 3,842,500 (-)RGD
Celera204,252,631 - 4,261,199 (+)RGD
Sequence:
RefSeq Acc Id: XM_039098950   ⟹   XP_038954878
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,764,867 - 3,773,296 (-)NCBI
RefSeq Acc Id: XM_039098951   ⟹   XP_038954879
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,764,867 - 3,772,677 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001002807   ⟸   NM_001002807
- UniProtKB: Q6MG61 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000060240   ⟸   ENSRNOT00000068435
RefSeq Acc Id: XP_038954878   ⟸   XM_039098950
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GJS9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954879   ⟸   XM_039098951
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000091609   ⟸   ENSRNOT00000101151
RefSeq Acc Id: ENSRNOP00000088455   ⟸   ENSRNOT00000099306
RefSeq Acc Id: ENSRNOP00000087153   ⟸   ENSRNOT00000098310
RefSeq Acc Id: ENSRNOP00000001118   ⟸   ENSRNOT00000001118
Protein Domains
GST C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MG61-F1-model_v2 AlphaFold Q6MG61 1-241 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701384
Promoter ID:EPDNEW_R11908
Type:initiation region
Name:Clic1_1
Description:chloride intracellular channel 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11909  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,040,358 - 5,040,418EPDNEW
RGD ID:13701385
Promoter ID:EPDNEW_R11909
Type:multiple initiation site
Name:Clic1_2
Description:chloride intracellular channel 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11908  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,040,536 - 5,040,596EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303043 AgrOrtholog
BioCyc Gene G2FUF-4635 BioCyc
Ensembl Genes ENSRNOG00000029682 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000001118.3 UniProtKB/TrEMBL
  ENSRNOP00000060240.3 UniProtKB/TrEMBL
  ENSRNOP00000087153 ENTREZGENE
  ENSRNOP00000087153.1 UniProtKB/TrEMBL
  ENSRNOP00000088455.1 UniProtKB/TrEMBL
  ENSRNOP00000091609 ENTREZGENE
  ENSRNOP00000091609.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001118.6 UniProtKB/TrEMBL
  ENSRNOT00000068435.4 UniProtKB/TrEMBL
  ENSRNOT00000098310 ENTREZGENE
  ENSRNOT00000098310.1 UniProtKB/TrEMBL
  ENSRNOT00000099306.1 UniProtKB/TrEMBL
  ENSRNOT00000101151 ENTREZGENE
  ENSRNOT00000101151.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7932557 IMAGE-MGC_LOAD
InterPro CLIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLIC-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutathione-S-Trfase_C-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutathione-S-Trfase_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutathione_S-Trfase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutathione_S-Trfase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:406864 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124526 IMAGE-MGC_LOAD
NCBI Gene 406864 ENTREZGENE
PANTHER PTHR43920:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GST_N_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Clic1 PhenoGen
PRINTS INTCLCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GST_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47616 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52833 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs O-ClC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A790_RAT UniProtKB/TrEMBL
  A0A8I6GG89_RAT UniProtKB/TrEMBL
  A0A8I6GJS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2PYP3_RAT UniProtKB/TrEMBL
  A0A8L2QSI9_RAT UniProtKB/TrEMBL
  CLIC1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-02-14 Clic1  chloride intracellular channel 1      Symbol and Name status set to provisional 70820 PROVISIONAL