Clps (colipase) - Rat Genome Database

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Gene: Clps (colipase) Rattus norvegicus
Analyze
Symbol: Clps
Name: colipase
RGD ID: 2363
Description: Enables enzyme activator activity. Involved in positive regulation of catalytic activity; post-embryonic development; and response to food. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human CLPS (colipase); INTERACTS WITH ammonium chloride; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Colipase pancreatic; colipase, pancreatic; COLQ
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,622,234 - 6,624,414 (-)NCBIGRCr8
mRatBN7.2206,620,529 - 6,622,709 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl206,620,529 - 6,622,689 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,333,461 - 7,335,640 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,695,297 - 6,697,476 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,174,714 - 7,176,876 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,803,447 - 5,806,107 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,803,383 - 5,806,097 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,838,977 - 7,841,157 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,802,428 - 6,804,608 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1206,802,654 - 6,804,815 (-)NCBI
Celera208,178,902 - 8,179,040 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ClpsRatExperimental Diabetes Mellitus  IEP 2314624 RGD 
ClpsRattype 2 diabetes mellitus susceptibilityISORGD:7315252314627DNA:polymorphism:exon:p.R109C (human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ClpsRatproteasome-associated autoinflammatory syndrome 1  ISORGD:7315258554872ClinVar Annotator: match by term: Proteasome-associated autoinflammatory syndrome 1ClinVarPMID:28492532

1 to 20 of 38 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ClpsRat1,2-dichloroethane increases expressionISORGD:103676480464ethylene dichloride results in increased expression of CLPS mRNACTDPMID:28189721
ClpsRat1,2-dichloroethane affects expressionISORGD:103676480464ethylene dichloride affects the expression of CLPS mRNACTDPMID:28960355
ClpsRat1,2-dimethylhydrazine multiple interactionsISORGD:103676480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CLPS mRNACTDPMID:22206623
ClpsRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISORGD:1036764804642,4,5,2',4',5'-hexachlorobiphenyl affects the reaction [NR1I2 protein affects the expression of CLPS mRNA]CTDPMID:32352317
ClpsRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:103676480464Tetrachlorodibenzodioxin results in increased expression of CLPS mRNACTDPMID:22539624
ClpsRat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISORGD:1036764804642,2',4,4',5-brominated diphenyl ether affects the expression of CLPS mRNACTDPMID:38648751
ClpsRatammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of CLPS mRNACTDPMID:16483693
ClpsRatbezafibrate increases expressionISORGD:103676480464Bezafibrate results in increased expression of CLPS mRNACTDPMID:18787029
ClpsRatbis(2-ethylhexyl) phthalate multiple interactionsISORGD:103676480464[Streptozocin co-treated with Diethylhexyl Phthalate] results in decreased expression of CLPS mRNACTDPMID:31606821
ClpsRatbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of CLPS mRNACTDPMID:25181051
ClpsRatbisphenol A decreases methylationISORGD:7315256480464bisphenol A results in decreased methylation of CLPS geneCTDPMID:31601247
ClpsRatcadmium atom multiple interactionsISORGD:103676480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CLPS more ...CTDPMID:37325564
ClpsRatcadmium dichloride decreases methylationEXP 6480464Cadmium Chloride results in decreased methylation of CLPS promoterCTDPMID:22457795
ClpsRatcadmium dichloride multiple interactionsISORGD:103676480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CLPS more ...CTDPMID:37325564
ClpsRatcarbon nanotube increases expressionISORGD:103676480464Nanotubes, Carbon results in increased expression of CLPS mRNACTDPMID:25620056
ClpsRatcarbon nanotube decreases expressionISORGD:103676480464Nanotubes, Carbon analog results in decreased expression of CLPS mRNACTDPMID:25620056
ClpsRatchlorpyrifos increases expressionISORGD:103676480464Chlorpyrifos results in increased expression of CLPS mRNACTDPMID:37019170
ClpsRatdibutyl phthalate decreases expressionISORGD:103676480464Dibutyl Phthalate results in decreased expression of CLPS mRNACTDPMID:17361019
ClpsRatflavonoids increases expressionEXP 6480464Flavonoids results in increased expression of CLPS mRNACTDPMID:18035473
ClpsRatfolic acid multiple interactionsISORGD:103676480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CLPS mRNACTDPMID:22206623

1 to 20 of 38 rows

Biological Process
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ClpsRatdigestion involved_inIEAUniProtKB-KW:KW-02221600115GO_REF:0000043UniProtGO_REF:0000043
ClpsRatdigestion involved_inIEAInterPro:IPR001981|InterPro:IPR017913|InterPro:IPR017914|InterPro:IPR0179151600115GO_REF:0000002InterProGO_REF:0000002
ClpsRatlipid catabolic process involved_inIEAUniProtKB-KW:KW-04421600115GO_REF:0000043UniProtGO_REF:0000043
ClpsRatlipid catabolic process involved_inIEAInterPro:IPR001981|InterPro:IPR017913|InterPro:IPR017914|InterPro:IPR0179151600115GO_REF:0000002InterProGO_REF:0000002
ClpsRatlipid metabolic process involved_inIEAUniProtKB-KW:KW-04431600115GO_REF:0000043UniProtGO_REF:0000043
ClpsRatpositive regulation of catalytic activity  IDA 2303166 RGD 
ClpsRatpost-embryonic development  IEP 728275 RGD 
ClpsRatresponse to bacterium acts_upstream_of_or_withinISORGD:103671624291 PMID:23012479RGDPMID:23012479
ClpsRatresponse to bacterium acts_upstream_of_or_withinIEAUniProtKB:Q9CQC2|ensembl:ENSMUSP000000250621600115GO_REF:0000107EnsemblGO_REF:0000107
ClpsRatresponse to food  IEP 2303156 RGD 
ClpsRatresponse to food involved_inIBAPANTHER:PTN000004990|RGD:23631600115GO_REF:0000033GO_CentralGO_REF:0000033
ClpsRatretinoid metabolic process involved_inISORGD:103671624291MGI:2660767 PMID:11751900RGDPMID:11751900
ClpsRatretinoid metabolic process involved_inIEAUniProtKB:Q9CQC2|ensembl:ENSMUSP000000250621600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 13 of 13 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ClpsRatextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
ClpsRatextracellular region located_inIEAInterPro:IPR001981|InterPro:IPR017913|InterPro:IPR017914|InterPro:IPR0179151600115GO_REF:0000002InterProGO_REF:0000002
ClpsRatextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ClpsRatenzyme activator activity  IDA 728275 RGD 
ClpsRatenzyme activator activity enablesIEAInterPro:IPR001981|InterPro:IPR017913|InterPro:IPR017914|InterPro:IPR017915|InterPro:IPR0475761600115GO_REF:0000002InterProGO_REF:0000002
ClpsRatenzyme activator activity enablesIEAUniProtKB:Q9CQC2|ensembl:ENSMUSP000000250621600115GO_REF:0000107EnsemblGO_REF:0000107
ClpsRatenzyme activator activity enablesISORGD:103671624291MGI:2660767 PMID:11751900RGDPMID:11751900
ClpsRatlipase binding enablesIEAInterPro:IPR0475761600115GO_REF:0000002InterProGO_REF:0000002


1 to 13 of 13 rows
#
Reference Title
Reference Citation
1. Early inhibition of EGFR signaling prevents diabetes-induced up-regulation of multiple gene pathways in the mesenteric vasculature. Benter IF, etal., Vascul Pharmacol. 2009 Oct;51(4):236-45. Epub 2009 Jul 2.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat GP-3 is a pancreatic lipase with kinetic properties that differ from colipase-dependent pancreatic lipase. Jennens ML and Lowe ME, J Lipid Res. 1995 Nov;36(11):2374-82.
5. Putative association between a new polymorphism in exon 3 (Arg109Cys) of the pancreatic colipase gene and type 2 diabetes mellitus in two independent Caucasian study populations. Lindner I, etal., Mol Nutr Food Res. 2005 Oct;49(10):972-6.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Rat pancreatic lipase and two related proteins: enzymatic properties and mRNA expression during development. Payne RM, etal., Am J Physiol 1994 May;266(5 Pt 1):G914-21.
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Consequences of metabolic challenges on hypothalamic colipase and PLRP2 mRNA in rats. Rippe C, etal., Brain Res. 2007 Dec 14;1185:152-7. Epub 2007 Sep 20.
12. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
13. Rat pancreatic colipase mRNA: nucleotide sequence of a cDNA clone and nutritional regulation by a lipidic diet. Wicker C and Puigserver A, Biochem Biophys Res Commun 1990 Feb 28;167(1):130-6.
1 to 13 of 13 rows
PMID:23012479   PMID:23376485  



Clps
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,622,234 - 6,624,414 (-)NCBIGRCr8
mRatBN7.2206,620,529 - 6,622,709 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl206,620,529 - 6,622,689 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,333,461 - 7,335,640 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,695,297 - 6,697,476 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,174,714 - 7,176,876 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,803,447 - 5,806,107 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,803,383 - 5,806,097 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,838,977 - 7,841,157 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,802,428 - 6,804,608 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1206,802,654 - 6,804,815 (-)NCBI
Celera208,178,902 - 8,179,040 (-)NCBICelera
Cytogenetic Map20p12NCBI
CLPS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38635,794,982 - 35,797,323 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl635,794,982 - 35,797,344 (-)EnsemblGRCh38hg38GRCh38
GRCh37635,762,759 - 35,765,100 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36635,870,738 - 35,873,080 (-)NCBINCBI36Build 36hg18NCBI36
Build 34635,870,737 - 35,873,080NCBI
Celera637,317,347 - 37,319,689 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef635,480,483 - 35,482,845 (-)NCBIHuRef
CHM1_1635,764,512 - 35,766,874 (-)NCBICHM1_1
T2T-CHM13v2.0635,615,336 - 35,617,677 (-)NCBIT2T-CHM13v2.0
Clps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,777,184 - 28,779,740 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,777,123 - 28,779,740 (-)EnsemblGRCm39 Ensembl
GRCm381728,558,210 - 28,560,766 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,558,149 - 28,560,766 (-)EnsemblGRCm38mm10GRCm38
MGSCv371728,695,159 - 28,697,659 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,285,803 - 28,288,303 (-)NCBIMGSCv36mm8
Celera1729,112,399 - 29,114,899 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.76NCBI
Clps
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554373,624,676 - 3,626,529 (-)NCBIChiLan1.0ChiLan1.0
CLPS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2550,258,577 - 50,266,220 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1646,126,488 - 46,134,106 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0635,357,206 - 35,359,929 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1636,559,250 - 36,561,607 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl636,559,250 - 36,561,607 (-)Ensemblpanpan1.1panPan2
CLPS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,911,551 - 4,913,620 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,911,549 - 4,914,427 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha124,926,579 - 4,928,648 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,253,188 - 5,255,253 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,253,186 - 5,255,974 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,909,029 - 4,911,098 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,988,134 - 4,990,194 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,088,781 - 5,090,845 (-)NCBIUU_Cfam_GSD_1.0
Clps
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494640,454,566 - 40,457,307 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647623,502,923 - 23,505,664 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647623,502,923 - 23,505,664 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLPS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl731,618,920 - 31,621,132 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1731,618,920 - 31,621,132 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2736,546,796 - 36,572,527 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLPS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11736,320,468 - 36,322,912 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1736,320,541 - 36,322,902 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604435,721,240 - 35,723,673 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clps
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,768,316 - 21,770,706 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475421,762,628 - 21,770,711 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Clps
11 total Variants


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
20 5803549 5803550 C T snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/N (MCW), DA/OlaHsd (2019), ACI/EurMcwi (2019), ACI/N (2020), ACI/EurMcwi (RGD) View more Information

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:58
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000000611
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 23 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2046066076691706Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat

1 to 10 of 23 rows
AI045503  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2206,620,574 - 6,621,167 (+)MAPPERmRatBN7.2
Rnor_6.0205,803,493 - 5,804,085NCBIRnor6.0
Rnor_5.0207,839,023 - 7,839,615UniSTSRnor5.0
RGSC_v3.4206,802,474 - 6,803,066UniSTSRGSC3.4
RH 3.4 Map2077.54UniSTS
Cytogenetic Map20p12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 6 15 31 22 23 12 16 12 1 66 35 27 12 35 11



Ensembl Acc Id: ENSRNOT00000000611   ⟹   ENSRNOP00000000611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl206,620,529 - 6,622,689 (-)Ensembl
Rnor_6.0 Ensembl205,803,447 - 5,806,097 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085996   ⟹   ENSRNOP00000073599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,803,383 - 5,805,627 (-)Ensembl
RefSeq Acc Id: NM_013139   ⟹   NP_037271
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8206,622,234 - 6,624,414 (-)NCBI
mRatBN7.2206,620,529 - 6,622,709 (-)NCBI
Rnor_6.0205,803,447 - 5,805,627 (-)NCBI
Rnor_5.0207,838,977 - 7,841,157 (-)NCBI
RGSC_v3.4206,802,428 - 6,804,608 (-)RGD
Celera208,178,902 - 8,179,040 (-)NCBI
Sequence:
Protein RefSeqs NP_037271 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA20505 (Get FASTA)   NCBI Sequence Viewer  
  AAA40943 (Get FASTA)   NCBI Sequence Viewer  
  EDL96928 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000611
GenBank Protein P17084 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037271   ⟸   NM_013139
- Peptide Label: precursor
- UniProtKB: P17084 (UniProtKB/Swiss-Prot),   F1LNA9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000611   ⟸   ENSRNOT00000000611
Ensembl Acc Id: ENSRNOP00000073599   ⟸   ENSRNOT00000085996
Colipase C-terminal   Colipase N-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-P17084-F1-model_v2 AlphaFold P17084 1-112 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701430
Promoter ID:EPDNEW_R11953
Type:single initiation site
Name:Clps_2
Description:colipase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11954  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,805,627 - 5,805,687EPDNEW
RGD ID:13701433
Promoter ID:EPDNEW_R11954
Type:multiple initiation site
Name:Clps_1
Description:colipase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11953  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,806,097 - 5,806,157EPDNEW


1 to 27 of 27 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-4416 BioCyc
Ensembl Genes ENSRNOG00000000510 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000000611 ENTREZGENE
Gene3D-CATH Lipase, subunit A UniProtKB/Swiss-Prot
InterPro CLPS_chr UniProtKB/Swiss-Prot
  Colipase UniProtKB/Swiss-Prot
  Colipase_C UniProtKB/Swiss-Prot
  Colipase_CS UniProtKB/Swiss-Prot
  Colipase_N UniProtKB/Swiss-Prot
KEGG Report rno:25680 UniProtKB/Swiss-Prot
NCBI Gene 25680 ENTREZGENE
PANTHER COLIPASE UniProtKB/Swiss-Prot
  PTHR10041 UniProtKB/Swiss-Prot
Pfam Colipase UniProtKB/Swiss-Prot
  Colipase_C UniProtKB/Swiss-Prot
PhenoGen Clps PhenoGen
PRINTS COLIPASE UniProtKB/Swiss-Prot
PROSITE COLIPASE_1 UniProtKB/Swiss-Prot
  COLIPASE_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000510 RatGTEx
SMART COLIPASE UniProtKB/Swiss-Prot
Superfamily-SCOP Colipase-like UniProtKB/Swiss-Prot
TIGR TC219787
UniProt A6JJR2_RAT UniProtKB/TrEMBL
  COL_RAT UniProtKB/Swiss-Prot
  F1LNA9 ENTREZGENE, UniProtKB/TrEMBL
  P17084 ENTREZGENE
1 to 27 of 27 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Clps  colipase  Clps  colipase, pancreatic  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Clps  colipase, pancreatic    colipase  Name updated 1299863 APPROVED
2002-11-06 Clps  colipase    Colipase pancreatic  Name updated 625702 APPROVED
2002-06-10 Clps  Colipase pancreatic      Symbol and Name status set to approved 70586 APPROVED