CLPS (colipase) - Rat Genome Database

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Gene: CLPS (colipase) Homo sapiens
Analyze
Symbol: CLPS
Name: colipase
RGD ID: 731525
HGNC Page HGNC:2085
Description: Predicted to enable enzyme activator activity and lipase binding activity. Predicted to be involved in response to food. Predicted to act upstream of or within response to bacterium. Predicted to be located in extracellular region. Implicated in type 2 diabetes mellitus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: colipase, pancreatic; pancreatic colipase preproprotein
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38635,794,982 - 35,797,323 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl635,794,982 - 35,797,344 (-)EnsemblGRCh38hg38GRCh38
GRCh37635,762,759 - 35,765,100 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36635,870,738 - 35,873,080 (-)NCBINCBI36Build 36hg18NCBI36
Build 34635,870,737 - 35,873,080NCBI
Celera637,317,347 - 37,319,689 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef635,480,483 - 35,482,845 (-)NCBIHuRef
CHM1_1635,764,512 - 35,766,874 (-)NCBICHM1_1
T2T-CHM13v2.0635,615,336 - 35,617,677 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Early inhibition of EGFR signaling prevents diabetes-induced up-regulation of multiple gene pathways in the mesenteric vasculature. Benter IF, etal., Vascul Pharmacol. 2009 Oct;51(4):236-45. Epub 2009 Jul 2.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Putative association between a new polymorphism in exon 3 (Arg109Cys) of the pancreatic colipase gene and type 2 diabetes mellitus in two independent Caucasian study populations. Lindner I, etal., Mol Nutr Food Res. 2005 Oct;49(10):972-6.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Genetic variability of procolipase associates with altered insulin secretion in non-diabetic Caucasians. Weyrich P, etal., Exp Clin Endocrinol Diabetes. 2009 Feb;117(2):83-7. Epub 2008 Aug 25.
Additional References at PubMed
PMID:1522902   PMID:1643046   PMID:2045105   PMID:2337598   PMID:6691986   PMID:8479519   PMID:9240923   PMID:10570245   PMID:10769148   PMID:11099794   PMID:11278590   PMID:12477932  
PMID:12598038   PMID:15287741   PMID:15342556   PMID:15489334   PMID:15583024   PMID:17715423   PMID:18051367   PMID:20054203   PMID:21873635   PMID:23204298   PMID:23376485   PMID:23918603  
PMID:26272612  


Genomics

Comparative Map Data
CLPS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38635,794,982 - 35,797,323 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl635,794,982 - 35,797,344 (-)EnsemblGRCh38hg38GRCh38
GRCh37635,762,759 - 35,765,100 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36635,870,738 - 35,873,080 (-)NCBINCBI36Build 36hg18NCBI36
Build 34635,870,737 - 35,873,080NCBI
Celera637,317,347 - 37,319,689 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef635,480,483 - 35,482,845 (-)NCBIHuRef
CHM1_1635,764,512 - 35,766,874 (-)NCBICHM1_1
T2T-CHM13v2.0635,615,336 - 35,617,677 (-)NCBIT2T-CHM13v2.0
Clps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,777,184 - 28,779,740 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,777,123 - 28,779,740 (-)EnsemblGRCm39 Ensembl
GRCm381728,558,210 - 28,560,766 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,558,149 - 28,560,766 (-)EnsemblGRCm38mm10GRCm38
MGSCv371728,695,159 - 28,697,659 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,285,803 - 28,288,303 (-)NCBIMGSCv36mm8
Celera1729,112,399 - 29,114,899 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.76NCBI
Clps
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,622,234 - 6,624,414 (-)NCBIGRCr8
mRatBN7.2206,620,529 - 6,622,709 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl206,620,529 - 6,622,689 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,333,461 - 7,335,640 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,695,297 - 6,697,476 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,174,714 - 7,176,876 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,803,447 - 5,806,107 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,803,383 - 5,806,097 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,838,977 - 7,841,157 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,802,428 - 6,804,608 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1206,802,654 - 6,804,815 (-)NCBI
Celera208,178,902 - 8,179,040 (-)NCBICelera
Cytogenetic Map20p12NCBI
Clps
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554373,624,676 - 3,626,529 (-)NCBIChiLan1.0ChiLan1.0
CLPS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2550,258,577 - 50,266,220 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1646,126,488 - 46,134,106 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0635,357,206 - 35,359,929 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1636,559,250 - 36,561,607 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl636,559,250 - 36,561,607 (-)Ensemblpanpan1.1panPan2
CLPS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,911,551 - 4,913,620 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,911,549 - 4,914,427 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha124,926,579 - 4,928,648 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,253,188 - 5,255,253 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,253,186 - 5,255,974 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,909,029 - 4,911,098 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,988,134 - 4,990,194 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,088,781 - 5,090,845 (-)NCBIUU_Cfam_GSD_1.0
Clps
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494640,454,566 - 40,457,307 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647623,502,923 - 23,505,664 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647623,502,923 - 23,505,664 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLPS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl731,618,920 - 31,621,132 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1731,618,920 - 31,621,132 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2736,546,796 - 36,572,527 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLPS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11736,320,468 - 36,322,912 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1736,320,541 - 36,322,902 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604435,721,240 - 35,723,673 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clps
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,768,316 - 21,770,706 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475421,762,628 - 21,770,711 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CLPS
7 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
NM_001832.4(CLPS):c.84+412C>T single nucleotide variant not specified [RCV000455917] Chr6:35796793 [GRCh38]
Chr6:35764570 [GRCh37]
Chr6:6p21.31		 benign
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p21.31-21.2(chr6:34683518-36905281)x3 copy number gain not provided [RCV000682660] Chr6:34683518..36905281 [GRCh37]
Chr6:6p21.31-21.2		 likely pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p21.31(chr6:35755658-35766576)x3 copy number gain not provided [RCV000745646] Chr6:35755658..35766576 [GRCh37]
Chr6:6p21.31		 benign
GRCh37/hg19 6p21.31(chr6:35755658-35779879)x3 copy number gain not provided [RCV000745647] Chr6:35755658..35779879 [GRCh37]
Chr6:6p21.31		 benign
NM_001832.4(CLPS):c.150G>A (p.Ala50=) single nucleotide variant not provided [RCV000961144] Chr6:35795788 [GRCh38]
Chr6:35763565 [GRCh37]
Chr6:6p21.31		 benign
GRCh37/hg19 6p22.1-q14.1(chr6:29455465-81447367) copy number gain not provided [RCV000767714] Chr6:29455465..81447367 [GRCh37]
Chr6:6p22.1-q14.1		 pathogenic
GRCh37/hg19 6p21.31-21.2(chr6:34401304-38435497) copy number loss Severe intrauterine growth retardation [RCV001291973] Chr6:34401304..38435497 [GRCh37]
Chr6:6p21.31-21.2		 pathogenic
NC_000006.11:g.(?_30695893)_(36953949_?)dup duplication Proteasome-associated autoinflammatory syndrome 1 [RCV003113679] Chr6:30695893..36953949 [GRCh37]
Chr6:6p21.33-21.2		 uncertain significance
NM_001832.4(CLPS):c.47A>G (p.Tyr16Cys) single nucleotide variant Inborn genetic diseases [RCV002848934] Chr6:35797242 [GRCh38]
Chr6:35765019 [GRCh37]
Chr6:6p21.31		 uncertain significance
NC_000006.11:g.(?_32148920)_(36953949_?)dup duplication not provided [RCV003154914] Chr6:32148920..36953949 [GRCh37]
Chr6:6p21.32-21.2		 uncertain significance
GRCh37/hg19 6p21.31-21.1(chr6:35562152-42003452)x1 copy number loss not provided [RCV003485510] Chr6:35562152..42003452 [GRCh37]
Chr6:6p21.31-21.1		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:343
Count of miRNA genes:320
Interacting mature miRNAs:339
Transcripts:ENST00000259938
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D6S2063  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37635,762,800 - 35,762,914UniSTSGRCh37
Build 36635,870,778 - 35,870,892RGDNCBI36
Celera637,317,387 - 37,317,501RGD
Cytogenetic Map6p21.31UniSTS
HuRef635,480,524 - 35,480,638UniSTS
Stanford-G3 RH Map61944.0UniSTS
NCBI RH Map6548.8UniSTS
GeneMap99-G3 RH Map62076.0UniSTS
RH46790  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37635,762,892 - 35,763,036UniSTSGRCh37
Build 36635,870,870 - 35,871,014RGDNCBI36
Celera637,317,479 - 37,317,623RGD
Cytogenetic Map6p21.31UniSTS
HuRef635,480,616 - 35,480,760UniSTS
GeneMap99-GB4 RH Map6130.65UniSTS
NCBI RH Map6521.9UniSTS
D6S2128  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37635,762,800 - 35,762,942UniSTSGRCh37
Build 36635,870,778 - 35,870,920RGDNCBI36
Celera637,317,387 - 37,317,529RGD
Cytogenetic Map6p21.31UniSTS
HuRef635,480,524 - 35,480,666UniSTS
Stanford-G3 RH Map61951.0UniSTS
NCBI RH Map6548.8UniSTS
GeneMap99-G3 RH Map62083.0UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High 1 6 1 6 2
Medium 309 270 182 47 108 32 371 167 235 6 183 142 14 136 247 1
Low 1167 1161 808 232 574 149 1593 877 1578 84 751 601 83 506 1054
Below cutoff 331 479 166 54 213 37 759 407 1048 45 184 187 18 209 477 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_012184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL157823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY780648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY780649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI439786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP321569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP322637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP324927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ271978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT006812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J02883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M95529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000259938   ⟹   ENSP00000259938
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl635,794,982 - 35,797,323 (-)Ensembl
RefSeq Acc Id: ENST00000616014   ⟹   ENSP00000483589
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl635,794,982 - 35,797,344 (-)Ensembl
RefSeq Acc Id: ENST00000622413   ⟹   ENSP00000482919
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl635,794,982 - 35,796,850 (-)Ensembl
RefSeq Acc Id: NM_001252597   ⟹   NP_001239526
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38635,794,982 - 35,797,323 (-)NCBI
GRCh37635,762,759 - 35,765,121 (-)NCBI
HuRef635,480,483 - 35,482,845 (-)NCBI
CHM1_1635,764,512 - 35,766,874 (-)NCBI
T2T-CHM13v2.0635,615,336 - 35,617,677 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001252598   ⟹   NP_001239527
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38635,794,982 - 35,797,323 (-)NCBI
HuRef635,480,483 - 35,482,845 (-)NCBI
CHM1_1635,764,512 - 35,766,874 (-)NCBI
T2T-CHM13v2.0635,615,336 - 35,617,677 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001832   ⟹   NP_001823
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38635,794,982 - 35,797,323 (-)NCBI
GRCh37635,762,759 - 35,765,121 (-)NCBI
Build 36635,870,738 - 35,873,080 (-)NCBI Archive
HuRef635,480,483 - 35,482,845 (-)NCBI
CHM1_1635,764,512 - 35,766,874 (-)NCBI
T2T-CHM13v2.0635,615,336 - 35,617,677 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001823   ⟸   NM_001832
- Peptide Label: isoform 1 preproprotein
- UniProtKB: Q5T9G7 (UniProtKB/Swiss-Prot),   Q5U809 (UniProtKB/Swiss-Prot),   P04118 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001239527   ⟸   NM_001252598
- Peptide Label: isoform 3 preproprotein
- UniProtKB: A0A087X0Q7 (UniProtKB/TrEMBL),   Q5U808 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239526   ⟸   NM_001252597
- Peptide Label: isoform 2
- UniProtKB: A0A087WZW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000482919   ⟸   ENST00000622413
RefSeq Acc Id: ENSP00000259938   ⟸   ENST00000259938
RefSeq Acc Id: ENSP00000483589   ⟸   ENST00000616014
Protein Domains
Colipase C-terminal   Colipase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P04118-F1-model_v2 AlphaFold P04118 1-112 view protein structure

Promoters
RGD ID:6872984
Promoter ID:EPDNEW_H9657
Type:initiation region
Name:CLPS_1
Description:colipase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38635,797,323 - 35,797,383EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:2085 AgrOrtholog
COSMIC CLPS COSMIC
Ensembl Genes ENSG00000137392 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000259938 ENTREZGENE
  ENST00000259938.7 UniProtKB/Swiss-Prot
  ENST00000616014 ENTREZGENE
  ENST00000616014.3 UniProtKB/TrEMBL
  ENST00000622413 ENTREZGENE
  ENST00000622413.2 UniProtKB/TrEMBL
Gene3D-CATH Lipase, subunit A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000137392 GTEx
HGNC ID HGNC:2085 ENTREZGENE
Human Proteome Map CLPS Human Proteome Map
InterPro CLPS_chr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Colipase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Colipase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Colipase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Colipase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:1208 UniProtKB/Swiss-Prot
NCBI Gene 1208 ENTREZGENE
OMIM 120105 OMIM
PANTHER COLIPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10041 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Colipase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Colipase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26611 PharmGKB
PRINTS COLIPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE COLIPASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COLIPASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART COLIPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Colipase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WZW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A087X0Q7 ENTREZGENE, UniProtKB/TrEMBL
  COL_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q5T9G7 ENTREZGENE
  Q5U808 ENTREZGENE, UniProtKB/TrEMBL
  Q5U809 ENTREZGENE
UniProt Secondary Q5T9G7 UniProtKB/Swiss-Prot
  Q5U809 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 CLPS  colipase  CLPS  colipase, pancreatic  Symbol and/or name change 5135510 APPROVED