Hspd1-ps6 (heat shock protein family D (Hsp60) member 1, pseudogene 6) - Rat Genome Database

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Gene: Hspd1-ps6 (heat shock protein family D (Hsp60) member 1, pseudogene 6) Rattus norvegicus
Analyze
Symbol: Hspd1-ps6
Name: heat shock protein family D (Hsp60) member 1, pseudogene 6
RGD ID: 1592098
Description: INTERACTS WITH Muraglitazar; Tesaglitazar
Type: pseudo
RefSeq Status: MODEL
Previously known as: heat shock protein 1, pseudogene 6; Hspd1-6p; LOC294396; similar to 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock protein 60) (HSP-60) (Mitochondrial matrix protein P1) (HSP-65)
Related Functional Gene: Hspd1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82031,910,004 - 31,912,891 (+)NCBIGRCr8
mRatBN7.22031,367,312 - 31,370,199 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.02033,033,319 - 33,035,155 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02034,813,493 - 34,816,483 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42030,678,241 - 30,692,935 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2032,767,207 - 32,769,043 (+)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:15057822   PMID:20193073  


Genomics

Variants

.
Variants in Hspd1-ps6
21 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_597415
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02033,033,319 - 33,035,155 (+)NCBI
RefSeq Acc Id: XR_599437
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2032,767,207 - 32,769,043 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3652 BioCyc
NCBI Gene 294396 ENTREZGENE
PhenoGen Hspd1-ps6 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-18 Hspd1-ps6  heat shock protein family D (Hsp60) member 1, pseudogene 6  Hspd1-ps6  heat shock protein 1, pseudogene 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-12-10 Hspd1-ps6  heat shock protein 1, pseudogene 6  LOC294396  similar to 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock protein 60) (HSP-60) (Mitochondrial matrix protein P1) (HSP-65)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC294396  similar to 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock protein 60) (HSP-60) (Mitochondrial matrix protein P1) (HSP-65)      Symbol and Name status set to provisional 70820 PROVISIONAL