LOC102546480 (uncharacterized LOC102546480)

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Gene: LOC102546480 (uncharacterized LOC102546480) Rattus norvegicus

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Symbol:

LOC102546480

Name:

uncharacterized LOC102546480

RGD ID:

7745235

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	20,231,223 - 20,233,879 (+)	NCBI		GRCr8
mRatBN7.2	20	20,233,173 - 20,234,711 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	20	21,491,235 - 21,493,071 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	20	23,592,045 - 23,593,576 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	20	21,598,049 - 21,599,885 (+)	NCBI		Celera
Cytogenetic Map	20	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC102546480
7 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	17617832	47606836	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26123605	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8042410	29322208	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	19190721	54435887	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
7411652	Foco24	Food consumption QTL 24		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	11757515	54435887	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
2317880	Alcrsp25	Alcohol response QTL 25	2.3		response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	17697550	54435887	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
9590092	Insglur9	Insulin/glucose ratio QTL 9	18.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	20	11757515	54435887	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_343828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_362173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_362173

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	20,231,223 - 20,233,879 (+)	NCBI
mRatBN7.2	20	20,233,173 - 20,234,711 (+)	NCBI
Rnor_6.0	20	21,491,235 - 21,493,071 (+)	NCBI
Rnor_5.0	20	23,592,045 - 23,593,576 (+)	NCBI

Sequence:

show sequence

CGTTTACCTGTCACAGAGTAGAGAGGGGATGAGTAATAATGGGAGAAATATATGTGTGCGTTCA
TGGAGCTTACAACCGTGAACTGGGACATCAACCACCGGTAGAGAAAAAGCCAGCTCTTCGCTGA
GGGATTCAAGGGAAGGAAAAGGTTCCCACAGAGTTGGCCTTCACCAACAAGAAAGGCTTTCCTT
CTCTGGGTGGTGGCCTCTCGCCATCCAAGATGGCGACTCACAGTCAATGTGGAGGGCAGCCAGC
CAGGCTCAGCGTTTGCTGAGGCTCCAGTCTTCATGGATTCCATATCAAACTGAGGTTCCTTCTC
TGTGGACGCACAAGGTCTCACCAAAACAGCCAGAACAGGAAGGACTGTGTTCTTTGTCTCCAGC
AAGCTAAGGATTCAGGCAAGGAACCCTACGGAAGATGCCCTATATTGGAAAGTCCCTTAAAACC
GAGCAGGATGGTGGCAGGCTCGCATTCAGAAGGAAACTTGCCTCTGCTGCTGAAAATGAAAGCG
GGATTTATCAGCCACACTCCTTTAAAACAACCACCACCTTAGCGACATGGGGGCCAGCCGCATC
CAGGAAACGCCGCCCGAAACCAGCAATTGTGCTTTAAGCTCTCTGCATTTTCAAACACATGGAT
AGTTGGTGTAAAAATATATTCTTTTCCTGCAGGGACGTGACTGTAATTAGTGTGTGCCAAAACT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCT
GAGATTTCATTGTCTTATCTCCTTACAGCATCTTAATGCGATTTTATTTTACTTTGTCAAAGTC
CTATTAGCATAAATGTGTTCTCCATAGCAAACAGTGTTCTTTTTTATGCAAAACAGGATTCAGC
TGACTCGAATAAAGCAGCTTGCAGTCTA

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Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-3913	BioCyc
NCBI Gene	LOC102546480	ENTREZGENE
PhenoGen	LOC102546480	PhenoGen
RNAcentral	URS0000CCF9CE	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-18	LOC102546480	uncharacterized LOC102546480			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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