Snord98 (small nucleolar RNA, C/D box 98) - Rat Genome Database

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Gene: Snord98 (small nucleolar RNA, C/D box 98) Rattus norvegicus
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Symbol: Snord98
Name: small nucleolar RNA, C/D box 98
RGD ID: 41352887
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120099034; small nucleolar RNA SNORD98
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82031,247,290 - 31,247,354 (-)NCBIGRCr8
mRatBN7.22030,704,584 - 30,704,648 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,704,584 - 30,704,648 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2033,885,946 - 33,886,010 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Snord98
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82031,247,290 - 31,247,354 (-)NCBIGRCr8
mRatBN7.22030,704,584 - 30,704,648 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,704,584 - 30,704,648 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2033,885,946 - 33,886,010 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20q11NCBI
SNORD98
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381068,755,172 - 68,755,238 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1068,755,172 - 68,755,238 (+)EnsemblGRCh38hg38GRCh38
GRCh371070,514,929 - 70,514,995 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361070,184,935 - 70,185,001 (+)NCBINCBI36Build 36hg18NCBI36
Celera1063,790,871 - 63,790,937 (+)NCBICelera
Cytogenetic Map10q21.3NCBI
HuRef1064,516,348 - 64,516,414 (+)NCBIHuRef
CHM1_11070,798,361 - 70,798,427 (+)NCBICHM1_1
T2T-CHM13v2.01069,624,385 - 69,624,451 (+)NCBIT2T-CHM13v2.0
Snord98
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,601,358 - 62,601,385 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,601,355 - 62,601,419 (-)EnsemblGRCm39 Ensembl
GRCm381062,765,579 - 62,765,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,765,576 - 62,765,640 (-)EnsemblGRCm38mm10GRCm38
MGSCv371062,228,327 - 62,228,354 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1063,866,780 - 63,866,807 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.47NCBI
LOC119871708
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha420,083,016 - 20,083,080 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0420,224,246 - 20,224,310 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl420,224,246 - 20,224,310 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1420,125,384 - 20,125,448 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0420,328,618 - 20,328,682 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0420,670,976 - 20,671,040 (+)NCBIUU_Cfam_GSD_1.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005497860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000083509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2030,704,584 - 30,704,648 (-)Ensembl
RefSeq Acc Id: XR_005497860
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82031,247,290 - 31,247,354 (-)NCBI
mRatBN7.22030,704,584 - 30,704,648 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3673 BioCyc
Ensembl Genes ENSRNOG00000051927 Ensembl
NCBI Gene LOC120099034 ENTREZGENE
PhenoGen Snord98 PhenoGen
RatGTEx ENSRNOG00000051927 RatGTEx
RNAcentral URS00006F5B22 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Snord98  small nucleolar RNA, C/D box 98  LOC120099034  small nucleolar RNA SNORD98  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120099034  small nucleolar RNA SNORD98  Snord98  small nucleolar RNA, C/D box 98  Data merged from RGD:15006783 737654 PROVISIONAL
2021-01-27 LOC120099034  small nucleolar RNA SNORD98      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Snord98  small nucleolar RNA, C/D box 98      Symbol and Name status set to provisional 45752 PROVISIONAL