Cuta (cutA divalent cation tolerance homolog) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cuta (cutA divalent cation tolerance homolog) Rattus norvegicus
Analyze
Symbol: Cuta
Name: cutA divalent cation tolerance homolog
RGD ID: 1303306
Description: Predicted to enable copper ion binding activity and enzyme binding activity. Involved in protein localization. Predicted to be located in membrane. Orthologous to human CUTA (cutA divalent cation tolerance homolog); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; aconitine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: brain acetylcholinesterase putative membrane anchor; cutA divalent cation tolerance homolog (E. coli); CutA1; divalent cation tolerant protein CUTA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Is Marker For: QTLs:   Tcs1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,024,816 - 5,026,446 (-)NCBIGRCr8
mRatBN7.2205,022,956 - 5,024,580 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,022,956 - 5,024,552 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,748,342 - 5,750,042 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,110,079 - 5,111,779 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,588,515 - 5,590,087 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,532,024 - 5,533,640 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,532,024 - 5,533,620 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,591,037 - 7,592,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,175,113 - 5,176,689 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,175,343 - 5,176,834 (-)NCBI
Celera206,605,378 - 6,606,954 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA,ISO,ISS)
mitochondrion  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The evolutionarily conserved trimeric structure of CutA1 proteins suggests a role in signal transduction. Arnesano F, etal., J Biol Chem 2003 Nov 14;278(46):45999-6006. Epub 2003 Aug 29.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Two distinct proteins are associated with tetrameric acetylcholinesterase on the cell surface. Perrier AL, etal., J Biol Chem. 2000 Nov 3;275(44):34260-5.
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10800960   PMID:12477932   PMID:15060004   PMID:19049969   PMID:19056867   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
Cuta
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,024,816 - 5,026,446 (-)NCBIGRCr8
mRatBN7.2205,022,956 - 5,024,580 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,022,956 - 5,024,552 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,748,342 - 5,750,042 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,110,079 - 5,111,779 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,588,515 - 5,590,087 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,532,024 - 5,533,640 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,532,024 - 5,533,620 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,591,037 - 7,592,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,175,113 - 5,176,689 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,175,343 - 5,176,834 (-)NCBI
Celera206,605,378 - 6,606,954 (-)NCBICelera
Cytogenetic Map20p12NCBI
CUTA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,416,442 - 33,418,107 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,416,442 - 33,418,317 (-)EnsemblGRCh38hg38GRCh38
GRCh37633,384,219 - 33,385,884 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,492,297 - 33,494,043 (-)NCBINCBI36Build 36hg18NCBI36
Build 34633,492,296 - 33,493,669NCBI
Celera634,938,742 - 34,940,488 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef633,126,468 - 33,128,214 (-)NCBIHuRef
CHM1_1633,386,214 - 33,387,959 (-)NCBICHM1_1
T2T-CHM13v2.0633,237,804 - 33,239,469 (-)NCBIT2T-CHM13v2.0
Cuta
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,156,946 - 27,158,847 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1727,152,793 - 27,158,543 (-)EnsemblGRCm39 Ensembl
GRCm381726,937,972 - 26,939,884 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,933,819 - 26,939,569 (-)EnsemblGRCm38mm10GRCm38
MGSCv371727,074,917 - 27,076,423 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,665,561 - 26,667,067 (-)NCBIMGSCv36mm8
Celera1727,474,695 - 27,476,201 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.6NCBI
Cuta
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,947,093 - 1,948,541 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,947,139 - 1,948,657 (-)NCBIChiLan1.0ChiLan1.0
CUTA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,901,557 - 47,904,152 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,768,742 - 43,771,338 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,995,889 - 32,997,581 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1634,107,227 - 34,109,009 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl634,107,228 - 34,108,958 (-)Ensemblpanpan1.1panPan2
CUTA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,827,510 - 2,829,151 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,823,512 - 2,829,433 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,908,319 - 2,909,973 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0123,159,155 - 3,160,809 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl123,155,157 - 3,160,664 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,826,276 - 2,827,930 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,907,383 - 2,909,038 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0123,005,497 - 3,007,151 (-)NCBIUU_Cfam_GSD_1.0
Cuta
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,478,437 - 38,480,176 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,479,953 - 25,486,157 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,480,134 - 25,481,831 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUTA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl729,720,094 - 29,721,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1729,720,094 - 29,721,713 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2734,373,420 - 34,375,039 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUTA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,648,181 - 38,649,906 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,648,140 - 38,649,810 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604433,265,237 - 33,267,013 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cuta
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,398,684 - 23,400,108 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,398,591 - 23,400,111 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cuta
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:31
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000000568, ENSRNOT00000072319
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2046066076691706Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
7175096Tcs1T cell selection QTL 1T cell selectionexpression2047270785024580Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat

Markers in Region
RH128947  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2205,022,644 - 5,022,847 (+)MAPPERmRatBN7.2
Rnor_6.0205,531,713 - 5,531,915NCBIRnor6.0
Rnor_5.0207,590,726 - 7,590,928UniSTSRnor5.0
RGSC_v3.4205,174,802 - 5,175,004UniSTSRGSC3.4
Celera206,605,065 - 6,605,269UniSTS
RH 3.4 Map2055.53UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_212494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP501235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX883042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB586341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV717217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000000568   ⟹   ENSRNOP00000000568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl205,022,956 - 5,024,450 (-)Ensembl
Rnor_6.0 Ensembl205,532,026 - 5,533,448 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000072319   ⟹   ENSRNOP00000065219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl205,022,959 - 5,024,552 (-)Ensembl
Rnor_6.0 Ensembl205,532,024 - 5,533,600 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,532,025 - 5,533,620 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,532,797 - 5,533,527 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,532,026 - 5,533,604 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,532,109 - 5,533,611 (-)Ensembl
RefSeq Acc Id: NM_001164706   ⟹   NP_001158178
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,024,816 - 5,026,392 (-)NCBI
mRatBN7.2205,022,956 - 5,024,532 (-)NCBI
Rnor_6.0205,532,024 - 5,533,600 (-)NCBI
Rnor_5.0207,591,037 - 7,592,657 (-)NCBI
RGSC_v3.4205,175,113 - 5,176,689 (-)RGD
Celera206,605,378 - 6,606,954 (-)RGD
Sequence:
RefSeq Acc Id: NM_001164707   ⟹   NP_001158179
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,024,816 - 5,026,095 (-)NCBI
mRatBN7.2205,022,956 - 5,024,235 (-)NCBI
Rnor_6.0205,532,024 - 5,533,303 (-)NCBI
Rnor_5.0207,591,037 - 7,592,657 (-)NCBI
RGSC_v3.4205,175,113 - 5,176,689 (-)RGD
Celera206,605,378 - 6,606,657 (-)NCBI
Sequence:
RefSeq Acc Id: NM_212494   ⟹   NP_997659
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,024,816 - 5,026,310 (-)NCBI
mRatBN7.2205,022,956 - 5,024,450 (-)NCBI
Rnor_6.0205,532,024 - 5,533,518 (-)NCBI
Rnor_5.0207,591,037 - 7,592,657 (-)NCBI
RGSC_v3.4205,175,113 - 5,176,689 (-)RGD
Celera206,605,378 - 6,606,872 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256120   ⟹   XP_006256182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,024,820 - 5,026,446 (-)NCBI
mRatBN7.2205,022,957 - 5,024,580 (-)NCBI
Rnor_6.0205,532,025 - 5,533,640 (-)NCBI
Rnor_5.0207,591,037 - 7,592,657 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005497189
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,025,288 - 5,026,397 (-)NCBI
mRatBN7.2205,022,960 - 5,024,464 (-)NCBI
RefSeq Acc Id: NP_997659   ⟸   NM_212494
- Peptide Label: isoform 1 precursor
- UniProtKB: Q6MGD0 (UniProtKB/Swiss-Prot),   G3V616 (UniProtKB/TrEMBL),   A6JJJ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001158178   ⟸   NM_001164706
- Peptide Label: isoform 2 precursor
- UniProtKB: Q6MGD0 (UniProtKB/Swiss-Prot),   A0A0G2JT00 (UniProtKB/TrEMBL),   A6JJJ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001158179   ⟸   NM_001164707
- Peptide Label: isoform 2 precursor
- UniProtKB: Q6MGD0 (UniProtKB/Swiss-Prot),   A0A0G2JT00 (UniProtKB/TrEMBL),   A6JJJ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256182   ⟸   XM_006256120
- Peptide Label: isoform X1
- UniProtKB: Q6MGD0 (UniProtKB/Swiss-Prot),   G3V616 (UniProtKB/TrEMBL),   A6JJJ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000568   ⟸   ENSRNOT00000000568
Ensembl Acc Id: ENSRNOP00000065219   ⟸   ENSRNOT00000072319

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MGD0-F1-model_v2 AlphaFold Q6MGD0 1-177 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701422
Promoter ID:EPDNEW_R11944
Type:initiation region
Name:Cuta_2
Description:cutA divalent cation tolerance homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11945  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,533,369 - 5,533,429EPDNEW
RGD ID:13701423
Promoter ID:EPDNEW_R11945
Type:initiation region
Name:Cuta_1
Description:cutA divalent cation tolerance homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11944  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,533,550 - 5,533,610EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303306 AgrOrtholog
BioCyc Gene G2FUF-4504 BioCyc
Ensembl Genes ENSRNOG00000000481 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000568.7 UniProtKB/TrEMBL
  ENSRNOT00000072319.4 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ion_tolerance_CutA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  N-reg_PII-like_a/b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  N-reg_PII/ATP_PRibTrfase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:294288 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 294288 ENTREZGENE
PANTHER PROTEIN CUTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23419 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CutA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cuta PhenoGen
RatGTEx ENSRNOG00000000481 RatGTEx
Superfamily-SCOP SSF54913 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JT00 ENTREZGENE, UniProtKB/TrEMBL
  A6JJJ5 ENTREZGENE, UniProtKB/TrEMBL
  A6JJJ6 ENTREZGENE, UniProtKB/TrEMBL
  A6JJJ7_RAT UniProtKB/TrEMBL
  A6JJJ8_RAT UniProtKB/TrEMBL
  CUTA_RAT UniProtKB/Swiss-Prot
  G3V616 ENTREZGENE, UniProtKB/TrEMBL
  Q6MGD0 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-27 Cuta  cutA divalent cation tolerance homolog  Cuta  cutA divalent cation tolerance homolog (E. coli)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-03 Cuta  cutA divalent cation tolerance homolog (E. coli)  Cuta  divalent cation tolerant protein CUTA  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Cuta  divalent cation tolerant protein CUTA      Symbol and Name status set to approved 1299863 APPROVED
2005-02-14 Cuta  divalent cation tolerant protein CUTA      Symbol and Name status set to provisional 70820 PROVISIONAL