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Gene: Col11a2 (collagen type XI alpha 2 chain) Rattus norvegicus
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Symbol: Col11a2
Name: collagen type XI alpha 2 chain
Description: Predicted to have extracellular matrix structural constituent. Involved in osteoblast differentiation. Predicted to localize to collagen trimer; extracellular matrix; and extracellular space. Human ortholog(s) of this gene implicated in cleft palate; nonsyndromic deafness (multiple); and osteochondrodysplasia (multiple). Orthologous to human COL11A2 (collagen type XI alpha 2 chain); PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; Entamoebiasis pathway; INTERACTS WITH 6-propyl-2-thiouracil; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Col11a2_mapped; collagen alpha-2(XI) chain; collagen, type XI, alpha 2; procollagen, type XI, alpha 2; procollagen, type XI, alpha 2 (mapped); type XI collagen alpha2 chain
Orthologs:
Homo sapiens (human) : COL11A2 (collagen type XI alpha 2 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col11a2 (collagen, type XI, alpha 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col11a2 (collagen type XI alpha 2 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL11A2 (collagen type XI alpha 2 chain)
Canis lupus familiaris (dog) : COL11A2 (collagen type XI alpha 2 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col11a2 (collagen type XI alpha 2 chain)
Sus scrofa (pig) : COL11A2 (collagen type XI alpha 2 chain)
Chlorocebus sabaeus (African green monkey) : COL11A2 (collagen type XI alpha 2 chain)
Heterocephalus glaber (naked mole-rat) : Col11a2 (collagen type XI alpha 2 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0203,829,324 - 3,859,022 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,830,164 - 3,859,018 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,908,541 - 5,938,415 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,924,452 - 4,953,310 (-)NCBIRGSC3.4rn4RGSC3.4
Celera206,387,407 - 6,415,975 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Col11a2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 2373
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.