Ndufv3 (NADH:ubiquinone oxidoreductase subunit V3)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper VCMap Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Ndufv3 (NADH:ubiquinone oxidoreductase subunit V3) Rattus norvegicus

Analyze

Symbol:

Ndufv3

Name:

NADH:ubiquinone oxidoreductase subunit V3

RGD ID:

621020

Description:

Predicted to be involved in mitochondrial ATP synthesis coupled electron transport. Located in mitochondrion. Orthologous to human NDUFV3 (NADH:ubiquinone oxidoreductase subunit V3); PARTICIPATES IN forkhead class A signaling pathway; Alzheimer's disease pathway; Huntington's disease pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

CI-9kD; complex I-9kD; MGC72817; Mipp65; NADH dehydrogenase (ubiquinone) flavoprotein 3; NADH dehydrogenase (ubiquinone) flavoprotein 3-like; NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial; NADH-ubiquinone oxidoreductase 9 kDa subunit; Ndufv3l

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Related Pseudogenes:

Ndufv3-ps1

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	9,612,462 - 9,621,622 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	20	9,612,431 - 9,623,074 (+)	Ensembl
Rnor_6.0	20	10,265,826 - 10,275,298 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	10,265,806 - 10,275,304 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	12,455,139 - 12,464,611 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	9,951,109 - 9,960,265 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	20	9,951,416 - 9,960,492 (+)	NCBI
Celera	20	11,126,335 - 11,135,486 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 30 (ISO)

primary ciliary dyskinesia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

5-fluorouracil (ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

Aflatoxin B2 alpha (ISO)

amiodarone (EXP)

ammonium chloride (EXP)

azoxystrobin (ISO)

benzbromarone (EXP)

bisphenol A (EXP)

Brodifacoum (EXP)

cadmium dichloride (EXP)

captan (ISO)

cisplatin (ISO)

clofibrate (EXP,ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

deguelin (ISO)

deoxynivalenol (ISO)

finasteride (EXP)

flavonoids (EXP)

flutamide (ISO)

folic acid (ISO)

folpet (ISO)

L-ethionine (EXP)

lead(0) (ISO)

lead(2+) (ISO)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (ISO)

nefazodone (EXP)

niclosamide (ISO)

omeprazole (EXP)

oxybenzone (EXP)

p-toluidine (EXP)

paracetamol (ISO)

PCB138 (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (EXP,ISO)

pyrimidifen (ISO)

rotenone (ISO)

sodium dichromate (ISO)

sulforaphane (ISO)

sulindac (EXP)

sunitinib (ISO)

T-2 toxin (EXP)

tetrachloromethane (ISO)

thioacetamide (EXP)

toluene (EXP)

trichloroethene (EXP)

Triptolide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial ATP synthesis coupled electron transport (IBA,ISO)

Cellular Component

mitochondrial inner membrane (ISO)

mitochondrial respiratory chain complex I (IBA,IEA,ISO,ISS)

mitochondrion (IDA,ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Alzheimer's disease pathway (IEA)

forkhead class A signaling pathway (ISO)

Huntington's disease pathway (IEA)

oxidative phosphorylation pathway (IEA)

Parkinson's disease pathway (IEA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Kitagawa M, etal., Exp Cell Res 1997 Aug 25;235(1):71-8.
3.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	Pipeline to import KEGG annotations from KEGG into RGD
5.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
6.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12611891	PMID:14651853	PMID:15489334	PMID:18614015	PMID:20833797	PMID:22658674	PMID:22681889	PMID:24746669	PMID:25002582	PMID:26686297	PMID:27626371
PMID:27940020

Genomics

Comparative Map Data

Ndufv3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	20	9,612,462 - 9,621,622 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	20	9,612,431 - 9,623,074 (+)	Ensembl
Rnor_6.0	20	10,265,826 - 10,275,298 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	10,265,806 - 10,275,304 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	12,455,139 - 12,464,611 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	9,951,109 - 9,960,265 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	20	9,951,416 - 9,960,492 (+)	NCBI
Celera	20	11,126,335 - 11,135,486 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

NDUFV3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	21	42,879,644 - 42,913,304 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	21	42,893,271 - 42,913,299 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	21	44,313,419 - 44,333,409 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	43,186,447 - 43,202,842 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	21	43,186,446 - 43,202,841	NCBI
Celera	21	29,462,954 - 29,479,344 (+)	NCBI
Cytogenetic Map	21	q22.3	NCBI
HuRef	21	29,728,932 - 29,766,787 (+)	NCBI		HuRef
CHM1_1	21	43,874,271 - 43,890,607 (+)	NCBI		CHM1_1

Ndufv3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	31,739,089 - 31,750,300 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	17	31,739,089 - 31,750,305 (+)	Ensembl
GRCm38	17	31,520,115 - 31,531,326 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	31,520,115 - 31,531,331 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	31,657,060 - 31,668,271 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	17	31,248,868 - 31,260,036 (+)	NCBI			mm8
Celera	17	32,437,759 - 32,448,956 (+)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI

Ndufv3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	39,026,057 - 39,039,347 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	39,029,943 - 39,039,425 (-)	NCBI	ChiLan1.0	ChiLan1.0

NDUFV3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	21	42,516,295 - 42,531,750 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	42,516,295 - 42,531,750 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	21	29,205,714 - 29,222,057 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

NDUFV3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	37,118,201 - 37,131,035 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	37,118,247 - 37,130,810 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	36,268,697 - 36,281,543 (+)	NCBI
ROS_Cfam_1.0	31	36,659,624 - 36,672,473 (+)	NCBI
UMICH_Zoey_3.1	31	36,527,744 - 36,540,579 (+)	NCBI
UNSW_CanFamBas_1.0	31	36,507,988 - 36,520,853 (+)	NCBI
UU_Cfam_GSD_1.0	31	37,004,390 - 37,017,234 (+)	NCBI

Ndufv3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	36,353,922 - 36,365,099 (+)	NCBI
SpeTri2.0	NW_004936500	1,102,724 - 1,113,856 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NDUFV3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	13	206,111,337 - 206,123,987 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	216,572,830 - 216,576,885 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NDUFV3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	86,750,630 - 86,759,744 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	2	86,750,648 - 86,759,826 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666054	14,722,078 - 14,736,492 (+)	NCBI	Vero_WHO_p1.0

Ndufv3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624745	27,777,507 - 27,786,939 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH129486

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	9,621,420 - 9,621,604 (+)	MAPPER	mRatBN7.2
mRatBN7.2	13	45,916,257 - 45,916,441 (-)	MAPPER	mRatBN7.2
mRatBN7.2	13	45,916,257 - 45,916,441 (+)	MAPPER	mRatBN7.2
mRatBN7.2	20	9,621,420 - 9,621,604 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	10,275,097 - 10,275,280	NCBI	Rnor6.0
Rnor_6.0	13	51,297,241 - 51,297,424	NCBI	Rnor6.0
Rnor_5.0	13	56,353,905 - 56,354,088	UniSTS	Rnor5.0
Rnor_5.0	20	12,464,410 - 12,464,593	UniSTS	Rnor5.0
RGSC_v3.4	13	47,416,575 - 47,416,758	UniSTS	RGSC3.4
RGSC_v3.4	20	9,960,064 - 9,960,247	UniSTS	RGSC3.4
Celera	20	11,135,285 - 11,135,468	UniSTS
Celera	13	46,244,064 - 46,244,247	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH129888

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	45,916,291 - 45,916,488 (+)	MAPPER	mRatBN7.2
mRatBN7.2	20	9,621,393 - 9,621,570 (-)	MAPPER	mRatBN7.2
Rnor_6.0	13	51,297,275 - 51,297,471	NCBI	Rnor6.0
Rnor_5.0	13	56,353,939 - 56,354,135	UniSTS	Rnor5.0
RGSC_v3.4	13	47,416,609 - 47,416,805	UniSTS	RGSC3.4
Celera	13	46,244,098 - 46,244,294	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH139157

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	9,618,167 - 9,618,287 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	10,271,846 - 10,271,965	NCBI	Rnor6.0
Rnor_5.0	20	12,461,159 - 12,461,278	UniSTS	Rnor5.0
RGSC_v3.4	20	9,956,813 - 9,956,932	UniSTS	RGSC3.4
Celera	20	11,132,034 - 11,132,153	UniSTS
RH 3.4 Map	20	130.73	UniSTS
Cytogenetic Map	20	p12	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3621649	10078919	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	4606607	17617956	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	4606607	17617956	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	6691706	17489458	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	total urine protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8042410	17617956	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8042410	29322208	Rat
631265	Iresp1	Immunoglobin response QTL1	8.3		blood anti-double stranded DNA antibody amount (VT:0004762)	serum anti-DNA antibody level (CMO:0001533)	20	9039719	13461775	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	127
Count of miRNA genes:	93
Interacting mature miRNAs:	103
Transcripts:	ENSRNOT00000001564, ENSRNOT00000030926
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	47	57	41	19	41	8	13	74	36	41	11	8
Low	3	31	31	27	6	27		1	60	18	24	9
Below cutoff		6	18	7	10	7	4	4	10	16	15	2	4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001101011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_022607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB000098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC059134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB608313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK365764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV725422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000001564 ⟹ ENSRNOP00000001564

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	9,612,449 - 9,621,622 (+)	Ensembl
Rnor_6.0 Ensembl	20	10,265,806 - 10,275,304 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000086272 ⟹ ENSRNOP00000073627

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	9,612,431 - 9,617,077 (+)	Ensembl
Rnor_6.0 Ensembl	20	10,265,826 - 10,275,298 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098355 ⟹ ENSRNOP00000084950

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	9,612,431 - 9,623,074 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106384 ⟹ ENSRNOP00000092722

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	9,612,507 - 9,621,617 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117823 ⟹ ENSRNOP00000090547

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	9,616,768 - 9,621,622 (+)	Ensembl

RefSeq Acc Id:

NM_001101011 ⟹ NP_001094481

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	9,612,462 - 9,621,622 (+)	NCBI
Rnor_6.0	20	10,265,826 - 10,275,298 (+)	NCBI
Rnor_5.0	20	12,455,139 - 12,464,611 (+)	NCBI
RGSC_v3.4	20	9,951,109 - 9,960,265 (+)	RGD
Celera	20	11,126,335 - 11,135,486 (+)	RGD

Sequence:

show sequence

ACGTGACGCGGGGCCGAGCCTCGGGTTGTGCGGGTGCACGCTCAGGTTACGTACCTAGGTGCGA
CCTCGGCGCTGGGCGTCTGTACCATGGCGGTCTCTCTCCTGCTGCGGGGAGGACGAATCCGGGC
GCTGAAGGCTGCCCTTCTCGAGGCAAAGGTGTTCCGAGGAGAACTGGCTTCTACAGTGCCCCTG
TCTACAGAGTCCGAGAATAATAAAAAGGCGGCAGGACCAACTAGCAAGACGGAAAGTGTGTTCA
AAGAGCCCACACTGGTTCCCGAGTCGAGTGACACCACCACCTACAAGAACCTGCAGCATCATGA
GTACAACGCATTCACCTTCCTAGACCTGAACCTGGACCTCTCCAAGTTCAGGCTGCCACAGCCG
TCTTCGGGACGAGAGTCGCCCCGGCACTGAACTCAACTCAGGGTAGACCCCCGTGTGGTCCCTT
GAATTCTTGCCTGTGAGAATAAAAGTCAGAGGCACAAA

hide sequence

RefSeq Acc Id:

NM_022607 ⟹ NP_072129

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	20	9,612,462 - 9,621,622 (+)	NCBI
Rnor_6.0	20	10,265,826 - 10,275,298 (+)	NCBI
Rnor_5.0	20	12,455,139 - 12,464,611 (+)	NCBI
RGSC_v3.4	20	9,951,109 - 9,960,265 (+)	RGD
Celera	20	11,126,335 - 11,135,486 (+)	RGD

Sequence:

show sequence

ACGTGACGCGGGGCCGAGCCTCGGGTTGTGCGGGTGCACGCTCAGGTTACGTACCTAGGTGCGA
CCTCGGCGCTGGGCGTCTGTACCATGGCGGTCTCTCTCCTGCTGCGGGGAGGACGAATCCGGGC
GCTGAAGGCTGCCCTTCTCGAGGCAAAGGTGTTCCGAGGAGAACTGGCTTCTACAGTGCCCCTG
TCTACAGAGTCCGAGAATAATAAAAAGGCGGCAGGACCAACTAGCAAGACGGAAAGTGTGTTCA
AAGATGTGGTGGGAGCAGAGGAGAGGGCCAAGCTCCTAGACACTCACACAGCAGCGGCACTGTC
CAAAAGCTCCCCTCCACCCAGTTCTTACCCATCAGTGGAGAACACAGGTGGGGCTGTCGCAGGC
CTGCCGCTCACAGACTTGTCAAGAAAGACTTTGGTAGCGTTTCCTCAGAAAGTTACGCCTCCAC
CGCATGCCTGGGCTTCTGACTCGGAGGCTCGGCGGCATGTCCAGAAAGTGACGAAAGATTCATC
TTCATCTTCCTCATCCAGCTCCTCAGATTCAGACTCTGATGGGGAGGAACATGGCTCCGACATT
GGTCCCCGAGTGGCAAGCAAAAGCAAGGCAGGGTTTTCCAAACCTGAGGCTTCTCGTCCCTCGA
AGAACGGAGCCCCTAAGATCACAGTTTTTGCAAAAGAGAAGGCCAAGGTGCAGAAGCCACACAC
AGATGTCACCTACCCAGAGAAGCCCCTGCAGCCTAAGAAGAAAGGGACTTTCACCAAGCCTGTA
GAAGATAGTAAAGAAACCAGGTCCAAGCTCATGACATCCAAGCCACAGTCCAGTGAGGTTTTGG
AGCAAAAAATGAAGGAAAAACAGCACCAGGGAAAACGGAGACCAGACAAGACAGGAAAGGAAAG
CACAGAGCTGTTTGAAGCTGAAGGAATTTTACCCGGCCACAGGAAAGCCAGAGTTTCCACACAG
CCCACAACCGGAACACAAGAGGCCAGCGCAGAACTCCGGCCAGCCGCTGCCCCCGAGTCGGGAG
CTAGACAGGAAGCCAAAGGGCCAGAGCTCGAATGGAAGACCGCTTCTCCCCTGGTCAGAAAAGA
AAGCCTGGAGAAGCAGGTGCCAGAAGGGAGCTTCCAGGCGGAGGAGGAGACCTCAGGAGATCAG
ACACTAGGGAGATATTCGAAGACAGTTCCTGTTGAGGAGAAAAATACCTTTGGAGAGAGAGCTG
GACCACAACTGGAGGGGACGTTCCAGGCGCCAGCCGGCGAAGCCCCGCCCACTGATGCAGGCCC
ACCCCAGGAAGCCCCAGGCGACACACAGGAGCCCACACTGGTTCCCGAGTCGAGTGACACCACC
ACCTACAAGAACCTGCAGCATCATGAGTACAACGCATTCACCTTCCTAGACCTGAACCTGGACC
TCTCCAAGTTCAGGCTGCCACAGCCGTCTTCGGGACGAGAGTCGCCCCGGCACTGAACTCAACT
CAGGGTAGACCCCCGTGTGGTCCCTTGAATTCTTGCCTGTGAGAATAAAAGTCAGAGGCACAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001094481	(Get FASTA)	NCBI Sequence Viewer
	NP_072129	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH59134	(Get FASTA)	NCBI Sequence Viewer
	BAA24351	(Get FASTA)	NCBI Sequence Viewer
	EDL97015	(Get FASTA)	NCBI Sequence Viewer
	EDL97016	(Get FASTA)	NCBI Sequence Viewer
	Q6PCU8	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_072129 ⟸ NM_022607
- Peptide Label:	isoform 1
- UniProtKB:	G3V644 (UniProtKB/TrEMBL), O54755 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVSLLLRGGRIRALKAALLEAKVFRGELASTVPLSTESENNKKAAGPTSKTESVFKDVVGAEE RAKLLDTHTAAALSKSSPPPSSYPSVENTGGAVAGLPLTDLSRKTLVAFPQKVTPPPHAWASDS EARRHVQKVTKDSSSSSSSSSSDSDSDGEEHGSDIGPRVASKSKAGFSKPEASRPSKNGAPKIT VFAKEKAKVQKPHTDVTYPEKPLQPKKKGTFTKPVEDSKETRSKLMTSKPQSSEVLEQKMKEKQ HQGKRRPDKTGKESTELFEAEGILPGHRKARVSTQPTTGTQEASAELRPAAAPESGARQEAKGP ELEWKTASPLVRKESLEKQVPEGSFQAEEETSGDQTLGRYSKTVPVEEKNTFGERAGPQLEGTF QAPAGEAPPTDAGPPQEAPGDTQEPTLVPESSDTTTYKNLQHHEYNAFTFLDLNLDLSKFRLPQ PSSGRESPRH hide sequence

RefSeq Acc Id:	NP_001094481 ⟸ NM_001101011
- Peptide Label:	isoform 2
- UniProtKB:	Q6PCU8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAVSLLLRGGRIRALKAALLEAKVFRGELASTVPLSTESENNKKAAGPTSKTESVFKEPTLVPE SSDTTTYKNLQHHEYNAFTFLDLNLDLSKFRLPQPSSGRESPRH hide sequence

RefSeq Acc Id:

ENSRNOP00000001564 ⟸ ENSRNOT00000001564

RefSeq Acc Id:

ENSRNOP00000073627 ⟸ ENSRNOT00000086272

RefSeq Acc Id:

ENSRNOP00000092722 ⟸ ENSRNOT00000106384

RefSeq Acc Id:

ENSRNOP00000090547 ⟸ ENSRNOT00000117823

RefSeq Acc Id:

ENSRNOP00000084950 ⟸ ENSRNOT00000098355

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701476

Promoter ID:

EPDNEW_R12000

Type:

initiation region

Name:

Ndufv3_1

Description:

NADH:ubiquinone oxidoreductase subunit V3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	10,265,875 - 10,265,935	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

Visual

CSV

TAB

Printer

Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
20	12461699	12461700	G	A	snv	HTX/Kyo (KyushuU)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621020	AgrOrtholog
Ensembl Genes	ENSRNOG00000001182	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00000027593	UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000001564	UniProtKB/TrEMBL
	ENSRNOP00000038094	UniProtKB/Swiss-Prot
	ENSRNOP00000073627	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000001564	UniProtKB/TrEMBL
	ENSRNOT00000030926	UniProtKB/Swiss-Prot
	ENSRNOT00000086272	UniProtKB/Swiss-Prot
InterPro	NDUFV3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:64539	UniProtKB/Swiss-Prot
NCBI Gene	64539	ENTREZGENE
PANTHER	PTHR17117	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	NDUFV3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ndufv3	PhenoGen
UniProt	G3V644	ENTREZGENE, UniProtKB/TrEMBL
	NDUV3_RAT	UniProtKB/Swiss-Prot
	O54755	ENTREZGENE, UniProtKB/TrEMBL
	Q6PCU8	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-18	Ndufv3	NADH:ubiquinone oxidoreductase subunit V3	Ndufv3	NADH dehydrogenase (ubiquinone) flavoprotein 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-01-23	Ndufv3	NADH dehydrogenase (ubiquinone) flavoprotein 3	Ndufv3l	NADH dehydrogenase (ubiquinone) flavoprotein 3-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Ndufv3l	NADH dehydrogenase (ubiquinone) flavoprotein 3-like	Mipp65	MIPP65 protein	Symbol and Name updated	1299863	APPROVED
2002-08-07	Mipp65	MIPP65 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in all tissues tested	633270
gene_homology	contains two regions with homology to mitochondrial NADH-ubiquinone oxidoreductase 9-kDa subunit precursor	633270

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)