Mapk13 (mitogen activated protein kinase 13) - Rat Genome Database

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Gene: Mapk13 (mitogen activated protein kinase 13) Rattus norvegicus
Analyze
Symbol: Mapk13
Name: mitogen activated protein kinase 13
RGD ID: 3045
Description: Enables ATP binding activity and MAP kinase activity. Involved in protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human MAPK13 (mitogen-activated protein kinase 13); PARTICIPATES IN p38 MAPK signaling pathway; amyotrophic lateral sclerosis pathway; Chagas disease pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,2',5,5'-tetrachlorobiphenyl; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MAP kinase 13; MAP kinase p38 delta; MAPK 13; MGC124619; mitogen-activated protein kinase 13; mitogen-activated protein kinase p38 delta; Prkm13; stress-activated protein kinase 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,836,979 - 6,847,197 (+)NCBIGRCr8
mRatBN7.2206,835,277 - 6,845,500 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl206,835,320 - 6,844,222 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,546,408 - 7,555,599 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,908,260 - 6,917,454 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,389,575 - 7,399,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,018,374 - 6,027,467 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,018,374 - 6,027,473 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0208,272,098 - 8,281,191 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,055,313 - 7,064,405 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1207,055,597 - 7,064,383 (+)NCBI
Celera208,389,500 - 8,398,583 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
4-nitrophenol  (ISO)
5-fluorouracil  (ISO)
afimoxifene  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butan-1-ol  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
diclofenac  (ISO)
dieldrin  (EXP)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
genistein  (ISO)
glyphosate  (ISO)
graphite  (EXP)
indometacin  (ISO)
irinotecan  (EXP)
L-methionine  (ISO)
monosodium L-glutamate  (EXP)
N-acetyl-L-cysteine  (EXP,ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
nickel dichloride  (EXP)
nickel sulfate  (ISO)
nicotine  (ISO)
nilotinib  (ISO)
Nonylphenol  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP,ISO)
paricalcitol  (ISO)
PCB138  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
pirinixic acid  (ISO)
pyrogallol  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sulfates  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. p38 MAP-kinases pathway regulation, function and role in human diseases. Cuenda A and Rousseau S, Biochim Biophys Acta. 2007 Aug;1773(8):1358-75. Epub 2007 Mar 24.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Murine p38-delta mitogen-activated protein kinase, a developmentally regulated protein kinase that is activated by stress and proinflammatory cytokines. Hu MC, etal., J Biol Chem 1999 Mar 12;274(11):7095-102.
5. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Melatonin arrests peroxynitrite-induced tau hyperphosphorylation and the overactivation of protein kinases in rat brain. Yin J, etal., J Pineal Res. 2006 Sep;41(2):124-9.
Additional References at PubMed
PMID:9218798   PMID:9731215   PMID:12244047   PMID:12477932   PMID:15729360   PMID:15850461   PMID:19279008   PMID:20826544   PMID:21227534   PMID:21420505   PMID:22506063   PMID:34814904  


Genomics

Comparative Map Data
Mapk13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,836,979 - 6,847,197 (+)NCBIGRCr8
mRatBN7.2206,835,277 - 6,845,500 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl206,835,320 - 6,844,222 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,546,408 - 7,555,599 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,908,260 - 6,917,454 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,389,575 - 7,399,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,018,374 - 6,027,467 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,018,374 - 6,027,473 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0208,272,098 - 8,281,191 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,055,313 - 7,064,405 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1207,055,597 - 7,064,383 (+)NCBI
Celera208,389,500 - 8,398,583 (+)NCBICelera
Cytogenetic Map20p12NCBI
MAPK13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,130,513 - 36,144,521 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,127,809 - 36,144,524 (+)EnsemblGRCh38hg38GRCh38
GRCh37636,098,290 - 36,112,298 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,206,240 - 36,215,820 (+)NCBINCBI36Build 36hg18NCBI36
Build 34636,206,239 - 36,215,820NCBI
Celera637,652,800 - 37,662,381 (+)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef635,818,129 - 35,832,173 (+)NCBIHuRef
CHM1_1636,100,011 - 36,114,054 (+)NCBICHM1_1
T2T-CHM13v2.0635,950,829 - 35,964,842 (+)NCBIT2T-CHM13v2.0
Mapk13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,988,260 - 28,997,678 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,988,271 - 28,999,207 (+)EnsemblGRCm39 Ensembl
GRCm381728,769,286 - 28,778,704 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,769,297 - 28,780,233 (+)EnsemblGRCm38mm10GRCm38
MGSCv371728,906,262 - 28,915,649 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,496,946 - 28,506,293 (+)NCBIMGSCv36mm8
Celera1729,324,078 - 29,333,467 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.0NCBI
Mapk13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554373,899,950 - 3,909,114 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554373,899,988 - 3,907,781 (+)NCBIChiLan1.0ChiLan1.0
MAPK13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2550,589,442 - 50,619,036 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1646,458,940 - 46,488,555 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0635,689,475 - 35,711,990 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1636,890,205 - 36,904,528 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl636,890,974 - 36,899,388 (+)Ensemblpanpan1.1panPan2
MAPK13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,239,783 - 5,248,197 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,239,750 - 5,248,196 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha125,259,690 - 5,268,114 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,587,473 - 5,595,899 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,587,535 - 5,595,894 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,242,126 - 5,250,558 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,321,188 - 5,329,595 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,421,369 - 5,429,783 (+)NCBIUU_Cfam_GSD_1.0
Mapk13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494640,741,448 - 40,748,117 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647623,212,074 - 23,218,775 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647623,212,116 - 23,218,726 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAPK13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl731,880,638 - 31,889,455 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1731,880,643 - 31,889,586 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MAPK13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11735,982,749 - 35,993,956 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1735,983,430 - 35,992,468 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604436,084,986 - 36,097,950 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mapk13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,506,369 - 21,513,801 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475421,506,086 - 21,513,803 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mapk13
87 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:67
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000000621
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20669170617489458Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 112 91 90 59 25 59 6 217 96 92 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000000621   ⟹   ENSRNOP00000000621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl206,835,320 - 6,844,222 (+)Ensembl
Rnor_6.0 Ensembl206,018,374 - 6,027,473 (+)Ensembl
RefSeq Acc Id: NM_019231   ⟹   NP_062104
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8206,837,019 - 6,846,114 (+)NCBI
mRatBN7.2206,835,320 - 6,844,417 (+)NCBI
Rnor_6.0206,018,374 - 6,027,467 (+)NCBI
Rnor_5.0208,272,098 - 8,281,191 (+)NCBI
RGSC_v3.4207,055,313 - 7,064,405 (+)RGD
Celera208,389,500 - 8,398,583 (+)RGD
Sequence:
RefSeq Acc Id: XM_039098625   ⟹   XP_038954553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8206,836,992 - 6,847,197 (+)NCBI
mRatBN7.2206,835,277 - 6,845,500 (+)NCBI
RefSeq Acc Id: XM_063279083   ⟹   XP_063135153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8206,836,979 - 6,847,197 (+)NCBI
RefSeq Acc Id: XM_063279084   ⟹   XP_063135154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8206,836,985 - 6,847,197 (+)NCBI
RefSeq Acc Id: NP_062104   ⟸   NM_019231
- UniProtKB: A6JJS2 (UniProtKB/TrEMBL),   G3V618 (UniProtKB/TrEMBL),   Q32Q45 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000621   ⟸   ENSRNOT00000000621
RefSeq Acc Id: XP_038954553   ⟸   XM_039098625
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063135153   ⟸   XM_063279083
- Peptide Label: isoform X1
- UniProtKB: Q32Q45 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135154   ⟸   XM_063279084
- Peptide Label: isoform X3
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WTY9-F1-model_v2 AlphaFold Q9WTY9 1-366 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701434
Promoter ID:EPDNEW_R11958
Type:initiation region
Name:Mapk13_1
Description:mitogen activated protein kinase 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0206,018,368 - 6,018,428EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3045 AgrOrtholog
BioCyc Gene G2FUF-4406 BioCyc
Ensembl Genes ENSRNOG00000000515 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000621.7 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7936049 IMAGE-MGC_LOAD
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAP_kinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAP_kinase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAPK_p38-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  p38delta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29513 UniProtKB/TrEMBL
MGC_CLONE MGC:124619 IMAGE-MGC_LOAD
NCBI Gene Mapk13 ENTREZGENE
PANTHER MITOGEN-ACTIVATED PROTEIN KINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MITOGEN-ACTIVATED PROTEIN KINASE 13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mapk13 PhenoGen
PRINTS P38MAPKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MAPK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000515 RatGTEx
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6JJS2 ENTREZGENE, UniProtKB/TrEMBL
  G3V618 ENTREZGENE, UniProtKB/TrEMBL
  MK13_RAT UniProtKB/Swiss-Prot
  Q32Q45 ENTREZGENE, UniProtKB/TrEMBL
  Q9WTY9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Mapk13  mitogen activated protein kinase 13      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_homology mouse homolog is a developmentally regulated protein kinase, and activated by stress and proinflammatory cytokines 69880