RT1-CE5 (RT1 class I, locus CE5) - Rat Genome Database

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Gene: RT1-CE5 (RT1 class I, locus CE5) Rattus norvegicus
Analyze
Symbol: RT1-CE5
Name: RT1 class I, locus CE5
RGD ID: 1595868
Description: Predicted to enable several functions, including 14-3-3 protein binding activity; TAP binding activity; and beta-2-microglobulin binding activity. Predicted to be involved in several processes, including antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent; antigen processing and presentation of endogenous peptide antigen via MHC class Ib; and regulation of lymphocyte mediated immunity. Predicted to be located in several cellular components, including bounding membrane of organelle; cell surface; and endoplasmic reticulum. Predicted to be part of MHC class Ib protein complex. Predicted to be active in external side of plasma membrane and extracellular space. Human ortholog(s) of this gene implicated in several diseases, including Stevens-Johnson syndrome; acquired immunodeficiency syndrome; hepatitis C; tuberculosis; and vulva cancer. Orthologous to several human genes including HLA-F (major histocompatibility complex, class I, F); PARTICIPATES IN allograft rejection pathway; antigen processing and presentation pathway; autoimmune thyroiditis pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC112896; MHC class I protein; MHC class Ib antigen; RT1 class I, CE5; RT1 class I, CE7; RT1-C/E5; RT1-CE7; rt1-E2; rt1-El
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,403,418 - 3,479,476 (-)NCBImRatBN7.2
Rnor_6.0204,892,702 - 4,896,993 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,892,702 - 4,896,991 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,968,846 - 6,973,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,509,593 - 3,513,732NCBIRGSC3.4rn4RGSC3.4
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
5-fluorouracil  (ISO)
acetamide  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amphotericin B  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
carbon nanotube  (ISO)
cefotaxime  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (EXP)
cyclophosphamide  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
fulvestrant  (ISO)
gefitinib  (ISO)
gentamycin  (EXP,ISO)
hydrochlorothiazide  (ISO)
isotretinoin  (ISO)
lidocaine  (EXP)
mifepristone  (ISO)
minocycline  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nickel sulfate  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
pentanal  (ISO)
phenobarbital  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
Repaglinide  (ISO)
resveratrol  (ISO)
saquinavir  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP,ISO)
simvastatin  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
tetrachloromethane  (EXP)
topotecan  (EXP)
tributylstannane  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
valproic acid  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10605026   PMID:10866120   PMID:11238641   PMID:11491540   PMID:12477932   PMID:12837137   PMID:16709803   PMID:19946888   PMID:20865824   PMID:23851683   PMID:24018270   PMID:26928464  
PMID:27455421   PMID:28636952   PMID:29531166  


Genomics

Comparative Map Data
RT1-CE5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,403,418 - 3,479,476 (-)NCBImRatBN7.2
Rnor_6.0204,892,702 - 4,896,993 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,892,702 - 4,896,991 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,968,846 - 6,973,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,509,593 - 3,513,732NCBIRGSC3.4rn4RGSC3.4
Cytogenetic Map20p12NCBI
HLA-F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,723,434 - 29,738,532 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl629,722,775 - 29,738,528 (+)EnsemblGRCh38hg38GRCh38
GRCh37629,691,211 - 29,695,073 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,799,096 - 29,803,052 (+)NCBINCBI36hg18NCBI36
Build 34629,799,219 - 29,802,262NCBI
Celera631,294,546 - 31,298,502 (+)NCBI
Cytogenetic Map6p22.1NCBI
HuRef629,494,781 - 29,498,733 (+)NCBIHuRef
CHM1_1629,693,239 - 29,697,195 (+)NCBICHM1_1
T2T-CHM13v2.0629,595,529 - 29,599,388 (+)NCBI
Gm11127
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,366,708 - 36,369,263 (-)NCBIGRCm39mm39
GRCm39 Ensembl1736,366,708 - 36,369,263 (-)Ensembl
GRCm381736,055,816 - 36,058,371 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1736,055,816 - 36,058,371 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17B1NCBI
cM Map1718.88NCBI
DLA-79
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11841,142,312 - 41,170,018 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1841,142,307 - 41,170,100 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1840,176,809 - 40,179,971 (+)NCBI
ROS_Cfam_1.01841,795,844 - 41,823,728 (+)NCBI
ROS_Cfam_1.0 Ensembl1841,796,018 - 41,799,523 (+)Ensembl
UMICH_Zoey_3.11841,261,712 - 41,264,874 (+)NCBI
UNSW_CanFamBas_1.01840,836,984 - 40,840,146 (+)NCBI
UU_Cfam_GSD_1.01841,564,328 - 41,567,490 (+)NCBI
SLA-7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1723,634,731 - 23,638,722 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,613,977 - 27,618,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap7p1.1NCBI

Position Markers
D20Wox23  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0206,994,638 - 6,994,850NCBIRnor5.0
Rnor_5.0206,969,406 - 6,969,629NCBIRnor5.0
RGSC_v3.4203,510,154 - 3,510,376UniSTSRGSC3.4
RGSC_v3.4203,536,556 - 3,536,767UniSTSRGSC3.4
Cytogenetic Map20p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013624629Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:386
Count of miRNA genes:227
Interacting mature miRNAs:263
Transcripts:ENSRNOT00000060980
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 8 27 11 19 11 2 1 12 13 11
Low 31 30 30 30 8 9 69 23 28 8
Below cutoff 4 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001008843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001033986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF210328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF210329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ276126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ314857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ315490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX883046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG963102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG963103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000060980   ⟹   ENSRNOP00000057699
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,892,702 - 4,896,991 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080987
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,896,031 - 4,896,969 (-)Ensembl
RefSeq Acc Id: NM_001008843   ⟹   NP_001008843
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,475,277 - 3,479,414 (-)NCBI
Rnor_6.0204,892,702 - 4,896,991 (-)NCBI
Rnor_5.0206,968,846 - 6,973,135 (-)NCBI
RGSC_v3.4203,509,593 - 3,513,732 (-)RGD
Celera203,404,618 - 3,422,730 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001033986   ⟹   NP_001029158
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,475,277 - 3,479,414 (-)NCBI
Rnor_6.0204,892,702 - 4,896,991 (-)NCBI
Rnor_5.0206,968,846 - 6,973,135 (-)NCBI
RGSC_v3.4203,509,593 - 3,513,732 (-)RGD
Celera203,404,618 - 3,422,730 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098655   ⟹   XP_038954583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,271 - 3,461,977 (-)NCBI
RefSeq Acc Id: XM_039098656   ⟹   XP_038954584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,271 - 3,461,977 (-)NCBI
RefSeq Acc Id: XM_039098657   ⟹   XP_038954585
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,271 - 3,461,973 (-)NCBI
RefSeq Acc Id: XM_039098658   ⟹   XP_038954586
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,403,418 - 3,461,971 (-)NCBI
RefSeq Acc Id: XM_039098659   ⟹   XP_038954587
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,457,971 - 3,461,976 (-)NCBI
RefSeq Acc Id: XM_039098660   ⟹   XP_038954588
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,457,971 - 3,479,476 (-)NCBI
RefSeq Acc Id: XM_039098661   ⟹   XP_038954589
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,617 - 3,437,237 (-)NCBI
RefSeq Acc Id: XM_039098662   ⟹   XP_038954590
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,271 - 3,461,975 (-)NCBI
RefSeq Acc Id: XM_039098663   ⟹   XP_038954591
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,457,971 - 3,461,976 (-)NCBI
RefSeq Acc Id: XM_039098664   ⟹   XP_038954592
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,617 - 3,437,237 (-)NCBI
RefSeq Acc Id: XM_039098665   ⟹   XP_038954593
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,403,424 - 3,437,237 (-)NCBI
RefSeq Acc Id: XM_039098666   ⟹   XP_038954594
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,457,971 - 3,461,975 (-)NCBI
RefSeq Acc Id: XM_039098667   ⟹   XP_038954595
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,475,277 - 3,479,476 (-)NCBI
RefSeq Acc Id: XM_039098669   ⟹   XP_038954597
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,617 - 3,437,237 (-)NCBI
RefSeq Acc Id: XM_039098670   ⟹   XP_038954598
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,457,971 - 3,461,975 (-)NCBI
RefSeq Acc Id: XM_039098671   ⟹   XP_038954599
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,475,277 - 3,479,476 (-)NCBI
RefSeq Acc Id: XM_039098672   ⟹   XP_038954600
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,431,509 - 3,437,237 (-)NCBI
RefSeq Acc Id: XM_039098673   ⟹   XP_038954601
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,617 - 3,437,237 (-)NCBI
RefSeq Acc Id: XR_005497231
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,617 - 3,437,237 (-)NCBI
RefSeq Acc Id: XR_005497232
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,431,509 - 3,437,237 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001008843 (Get FASTA)   NCBI Sequence Viewer  
  NP_001029158 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954583 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954584 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954585 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954586 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954587 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954588 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954590 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954591 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954592 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954593 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954594 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954595 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954597 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954598 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954599 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954600 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954601 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98841 (Get FASTA)   NCBI Sequence Viewer  
  AVP72132 (Get FASTA)   NCBI Sequence Viewer  
  AVP72133 (Get FASTA)   NCBI Sequence Viewer  
  CAB46085 (Get FASTA)   NCBI Sequence Viewer  
  CAB86228 (Get FASTA)   NCBI Sequence Viewer  
  CAC48028 (Get FASTA)   NCBI Sequence Viewer  
  CAC85699 (Get FASTA)   NCBI Sequence Viewer  
  CAD60939 (Get FASTA)   NCBI Sequence Viewer  
  CAD60940 (Get FASTA)   NCBI Sequence Viewer  
  CAD60941 (Get FASTA)   NCBI Sequence Viewer  
  CAD60942 (Get FASTA)   NCBI Sequence Viewer  
  CAD60943 (Get FASTA)   NCBI Sequence Viewer  
  CAD60944 (Get FASTA)   NCBI Sequence Viewer  
  CAD60946 (Get FASTA)   NCBI Sequence Viewer  
  CAE84011 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001008843   ⟸   NM_001008843
- Peptide Label: isoform 1 precursor
- UniProtKB: Q861J1 (UniProtKB/TrEMBL),   Q861Q0 (UniProtKB/TrEMBL),   Q95II0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029158   ⟸   NM_001033986
- Peptide Label: isoform 2 precursor
- UniProtKB: Q95II0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000057699   ⟸   ENSRNOT00000060980
RefSeq Acc Id: XP_038954586   ⟸   XM_039098658
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038954593   ⟸   XM_039098665
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038954584   ⟸   XM_039098656
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038954583   ⟸   XM_039098655
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954590   ⟸   XM_039098662
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038954585   ⟸   XM_039098657
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038954601   ⟸   XM_039098673
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038954597   ⟸   XM_039098669
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038954592   ⟸   XM_039098664
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038954589   ⟸   XM_039098661
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038954600   ⟸   XM_039098672
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038954588   ⟸   XM_039098660
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038954591   ⟸   XM_039098663
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038954587   ⟸   XM_039098659
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038954598   ⟸   XM_039098670
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038954594   ⟸   XM_039098666
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038954599   ⟸   XM_039098671
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038954595   ⟸   XM_039098667
- Peptide Label: isoform X13
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q95II0-F1-model_v2 AlphaFold Q95II0 1-375 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701371
Promoter ID:EPDNEW_R11894
Type:initiation region
Name:RT1-CE5_1
Description:RT1 class I, locus CE5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11896  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,896,966 - 4,897,026EPDNEW
RGD ID:13701376
Promoter ID:EPDNEW_R11895
Type:initiation region
Name:RT1-CE7_2
Description:RT1 class I, locus CE7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11886  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,896,984 - 4,897,044EPDNEW
RGD ID:13701373
Promoter ID:EPDNEW_R11896
Type:initiation region
Name:RT1-CE5_2
Description:RT1 class I, locus CE5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11894  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,897,018 - 4,897,078EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 4893295 4893296 C A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), SBN/Ygl (MCW), SBH/Ygl (MCW), FHL/EurMcwi (MCW)
20 4893301 4893302 G A snv SBH/Ygl (MCW), FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), SBN/Ygl (MCW)
20 4893313 4893314 T A snv F344/Stm (2019), SS/JrHsdMcwi (2019), LEXF2B/Stm (2019), F344/DuCrl (2019), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
20 4893332 4893333 C T snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), BXH2/CubMcwi (2020), SS/JrHsdMcwi (2019), F344/Stm (2019), LEXF2B/Stm (2019), SHRSP/A3NCrl (2019), F344/DuCrl (2019)
20 4893586 4893587 C A snv BXH2/CubMcwi (2020), GK/FarMcwi (2019), SHR/OlalpcvMcwi (2019), HXB31/IpcvMcwi (2019), SHRSP/A3NCrl (2019), HXB2/IpcvMcwi (2019)
20 4893608 4893609 A T snv MR/N (2020), PVG/Seac (2019)
20 4893812 4893813 C A snv GK/Ox (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), SHR/OlalpcvMcwi (2019), BXH2/CubMcwi (2020), GK/FarMcwi (2019), SHRSP/A3NCrl (2019), HXB31/IpcvMcwi (2019), HXB2/IpcvMcwi (2019)
20 4893827 4893828 C A snv FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW)
20 4894109 4894110 T A snv CDS, CDR
20 4894122 4894123 G A snv DA/OlaHsd (2019), FHH/EurMcwi (2019), ACI/N (2020), ACI/EurMcwi (2019)
20 4894131 4894132 C G snv CDR, CDS
20 4894139 4894140 G T snv PVG/Seac (2019)
20 4894182 4894183 C T snv LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), F344/Stm (2019), F344/DuCrl (2019), ACI/EurMcwi (2019), LL/MavRrrcAek (2020), FXLE18/Stm (2020), F344/N (2020), SS/JrHsdMcwi (2019)
20 4894192 4894193 G T snv ACI/N (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), SR/JrHsd (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), SS/JrHsdMcwi (2019), LL/MavRrrcAek (2020), LEXF3/Stm (2020), LEXF11/Stm (2020)
20 4894209 4894210 C T snv M520/NRrrcMcwi (2019), LE/Stm (2019), LEXF4/Stm (2020), FXLE16/Stm (2020), BXH2/CubMcwi (2020), M520/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), HXB31/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), BUF/N (2020)
20 4894211 4894212 C T snv ACI/EurMcwi (2019), ACI/N (2020), FHH/EurMcwi (2019), MR/N (2020), PVG/Seac (2019), WKY/N (2020), WN/N (2020), DA/OlaHsd (2019), LEW/Crl (2019), MWF/Hsd (2019), GH/OmrMcwi (MCW), WKY/NCrl (2019), WAG/RijCrl (2020)
20 4894218 4894219 A C snv MR/N (2020)
20 4894230 4894231 G T snv LH/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), M520/N (2020), M520/NRrrcMcwi (2019), LN/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), HXB31/IpcvMcwi (2019), FXLE16/Stm (2020), BXH2/CubMcwi (2020), BUF/N (2020), HXB2/IpcvMcwi (2019)
20 4894232 4894233 G A snv FXLE16/Stm (2020), MWF/Hsd (2019), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020)
20 4894260 4894261 C G snv SBN/Ygl (MCW), SBH/Ygl (MCW)
20 4894289 4894290 G T snv WKY/NCrl (2019), LEW/Crl (2019), WN/N (2020), WKY/N (2020)
20 4894296 4894297 G A snv LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019)
20 4894304 4894305 G T snv FHH/EurMcwi (2019)
20 4894314 4894315 C T snv BXH2/CubMcwi (2020), HXB2/IpcvMcwi (2019), LE/Stm (2019), LEXF10A/StmMcwi (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), BN/SsN (2020), BUF/N (2020), LN/MavRrrcAek (2020)
20 4896275 4896276 C T snv SR/JrHsd (MCW), F344/DuCrl (2019), F344/Stm (2019), LEXF1C/Stm (2019), LEXF11/Stm (2020), LEXF3/Stm (2020), LEXF1A/Stm (2019), FXLE18/Stm (2020)
20 4896308 4896309 G T snv F344/Stm (2019), LEXF3/Stm (2020), LEXF1C/Stm (2019), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/DuCrl (2019), LL/MavRrrcAek (2020), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019)
20 4896338 4896339 T C snv SS/JrHsdMcwi (2019), M520/NRrrcMcwi (2019), F344/DuCrl (2019)
20 4896368 4896369 C T snv MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), BUF/N (2020), DA/OlaHsd (2019), FXLE16/Stm (2020), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020)
20 4896395 4896396 C T snv HXB31/IpcvMcwi (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SR/JrHsd (2020), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), SHRSP/Gcrc (RGD), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), F344/N (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019)
20 4896397 4896398 C T snv WAG/RijCrl (2020), MWF/Hsd (2019)
20 4896398 4896399 G C snv CDS, CDR
20 4896400 4896401 G T snv GH/OmrMcwi (MCW), CDS, CDR, WN/N (2020), WKY/N (2020), WKY/NCrl (2019), LEW/Crl (2019)
20 4896419 4896420 C G snv LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), MWF/Hsd (2019), LE/Stm (2019), M520/N (2020), LEW/Crl (2019), DA/OlaHsd (2019), BUF/N (2020), CDS, CDR, LEXF4/Stm (2020)
20 4896458 4896459 C G snv SBH/Ygl (MCW), SBN/Ygl (MCW), BUF/N (2020), DA/OlaHsd (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), MWF/Hsd (2019), SHRSP/A3NCrl (2019), WKY/NCrl (2019), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW)
20 4896476 4896477 A G snv FXLE18/Stm (2020), F344/Stm (2019)
20 4896481 4896482 G A snv FXLE18/Stm (2020), F344/Stm (2019)
20 4896484 4896485 T A snv WKY/NCrl (2019), LE/Stm (2019), LEXF4/Stm (2020), LEW/Crl (2019), DA/OlaHsd (2019), MR/N (2020)
20 4896487 4896488 C T snv LE/Stm (2019), WKY/NCrl (2019), LEXF4/Stm (2020), LEW/Crl (2019), DA/OlaHsd (2019)
20 4896488 4896489 C G snv WAG/RijCrl (2020), MR/N (2020), WKY/N (2020), WKY/NCrl (2019), PVG/Seac (2019), MWF/Hsd (2019), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), ACI/N (MCW), WKY/N (MCW), WN/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), WN/N (2020)
20 4896490 4896491 A G snv LE/Stm (2019), LEXF4/Stm (2020), WKY/NCrl (2019), LEW/Crl (2019), DA/OlaHsd (2019)
20 4896494 4896495 C G snv CDR
20 4896494 4896495 C T snv DA/OlaHsd (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), WKY/NCrl (2019)
20 4896505 4896506 A G snv BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), M520/N (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), LH/MavRrrcAek (2020)
20 4896506 4896507 C T snv SBH/Ygl (MCW), SBN/Ygl (MCW), DA/OlaHsd (2019), FXLE18/Stm (2020), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), WKY/NCrl (2019)
20 4896527 4896528 G C snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SBH/Ygl (MCW)
20 4896898 4896899 G A snv ACI/EurMcwi (MCW), F344/Stm (2019), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), F344/DuCrl (2019), F344/NCrl (2019), FXLE16/Stm (2020), LEXF2B/Stm (2019), LL/MavRrrcAek (2020), SR/JrHsd (2020), LEXF11/Stm (2020), COP/CrCrl (MCW & UW)
20 4896901 4896902 T G snv M520/N (2020), BUF/N (2020)
20 4896909 4896910 G A snv SR/JrHsd (MCW), CDS, ACI/EurMcwi (MCW), CDR, SBH/Ygl (MCW), GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW)
20 4896915 4896916 A T snv FXLE16/Stm (2020), MWF/Hsd (2019)
20 4896936 4896937 A G snv BUF/N (2020)
20 4896937 4896938 G A snv WKY/N (2020), BUF/N (2020), WKY/NCrl (2019), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), SHRSP/A3NCrl (2019), GK/FarMcwi (2019), ACI/EurMcwi (2019), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), SBH/Ygl (MCW), GH/OmrMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), CDS, CDR, BXH2/CubMcwi (2020)
20 4896948 4896949 G A snv F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), SR/JrHsd (2020)
20 4896955 4896956 T C snv GK/FarMcwi (2019), FXLE16/Stm (2020), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), HXB2/IpcvMcwi (2019)
20 4896958 4896959 C T snv F344/DuCrl (2019), SR/JrHsd (2020), F344/Stm (2019), F344/NCrl (2019)
20 4896960 4896961 C T snv MWF/Hsd (2019), FXLE16/Stm (2020)
20 4896961 4896962 C T snv F344/NCrl (2019), F344/DuCrl (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/Stm (2019)
20 4932163 4932164 T C snv M520/NRrrcMcwi (2019), M520/N (2020), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), SBH/Ygl (MCW), LEXF4/Stm (2020), FXLE16/Stm (2020), BUF/N (2020), LE/Stm (2019)
20 4932175 4932176 G A snv WKY/N (MCW), WN/N (MCW), MR/N (MCW), F344/NRrrc (MCW), Buf/N (MCW), ACI/N (MCW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), SBN/Ygl (MCW), SBH/Ygl (MCW), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW)
20 4932181 4932182 C T snv FHL/EurMcwi (MCW), SBH/Ygl (MCW), SHRSP/A3NCrl (2019), GK/FarMcwi (2019), MWF/Hsd (2019), LEXF4/Stm (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020), M520/N (2020), HXB31/IpcvMcwi (2019)
20 4932188 4932189 G C snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), ACI/N (MCW), Buf/N (MCW), MR/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020)
20 4932191 4932192 C G snv FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020)
20 4932197 4932198 G T snv SBH/Ygl (MCW)
20 4932208 4932209 C A snv LEXF1A/Stm (2019), LEXF11/Stm (2020), LEXF2B/Stm (2019), LEXF3/Stm (2020), MR/N (2020), PVG/Seac (2019), SS/JrHsdMcwi (2019), SR/JrHsd (2020), F344/Stm (2019), LL/MavRrrcAek (2020), FHL/EurMcwi (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), FXLE18/Stm (2020), LEXF1C/Stm (2019)
20 4932395 4932396 G A snv FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), MR/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), SHRSP/A3NCrl (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WN/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
20 4932399 4932400 C T snv GK/FarMcwi (2019), SHRSP/A3NCrl (2019), HXB2/IpcvMcwi (2019)
20 4932405 4932406 C T snv ACI/EurMcwi (2019), WN/N (MCW), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), BUF/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), ACI/N (2020)
20 4932636 4932637 C T snv SBH/Ygl (MCW), BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), M520/NRrrcMcwi (2019)
20 4932680 4932681 A G snv CDR, CDS, GH/OmrMcwi (MCW)
20 4932690 4932691 C A snv WKY/NCrl (2019), LEW/Crl (2019)
20 4932924 4932925 C G snv F344/NCrl (2019), F344/Stm (2019), LEXF1A/Stm (2019), WAG/RijCrl (2020), LEXF2B/Stm (2019), SR/JrHsd (2020), LEXF1C/Stm (2019)
20 4933018 4933019 C T snv M520/NRrrcMcwi (2019), M520/N (2020), BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF10A/StmMcwi (2020)
20 4933019 4933020 A T snv LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), FXLE16/Stm (2020), BUF/N (2020)
20 4933078 4933079 G T snv ACI/N (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), ACI/EurMcwi (2019)
20 4933084 4933085 C T snv SR/JrHsd (2020), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), CDS, CDR, SS/JrHsdMcwi (2019)
20 4933096 4933097 G C snv SBH/Ygl (MCW)
20 4933097 4933098 T G snv WN/N (2020), WAG/RijCrl (2020), MWF/Hsd (2019), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LEW/Crl (2019), FXLE16/Stm (2020), BUF/N (2020), WKY/N (2020), WKY/NCrl (2019)
20 4933108 4933109 G A snv FXLE18/Stm (2020), LL/MavRrrcAek (2020), SS/JrHsdMcwi (2019), LEXF2B/Stm (2019), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), LEXF3/Stm (2020), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), F344/Stm (2019), LEXF1C/Stm (2019), SR/JrHsd (MCW)
20 4933110 4933111 G T snv WKY/N (2020), WN/N (2020), LEW/Crl (2019), WKY/NCrl (2019)
20 4933126 4933127 G A snv LE/Stm (2019), M520/N (2020), BUF/N (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), M520/NRrrcMcwi (2019)
20 4934464 4934465 T C snv SBN/Ygl (MCW)
20 4934524 4934525 G A snv SBH/Ygl (MCW), LE/Stm (RGD), BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LEXF10A/StmMcwi (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), LE/Stm (2019)
20 4934827 4934828 C G snv FHL/EurMcwi (MCW)
20 4934830 4934831 C T snv FHL/EurMcwi (MCW)
20 4934834 4934835 G T snv ACI/EurMcwi (MCW)
20 4934837 4934838 C G snv FHL/EurMcwi (MCW)
20 4934851 4934852 G A snv DA/OlaHsd (2019), ACI/EurMcwi (2019), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
20 4934908 4934909 T C snv ACI/EurMcwi (2019), DA/OlaHsd (2019), WAG/RijCrl (2020)
20 4934976 4934977 T A snv MWF/Hsd (2019)
20 4934994 4934995 C T snv COP/CrCrl (MCW & UW)
20 4935007 4935008 T C snv COP/CrCrl (MCW & UW)
20 4935022 4935023 C G snv COP/CrCrl (MCW & UW)
20 4935027 4935028 A T snv COP/CrCrl (MCW & UW)
20 4935350 4935351 G A snv SBH/Ygl (MCW), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), FXLE16/Stm (2020), BUF/N (2020), M520/N (2020), LH/MavRrrc (RGD), M520/NRrrcMcwi (2019), LE/Stm (RGD)
20 4935351 4935352 C G snv CDS, WKY/NCrl (2019), GK/FarMcwi (2019)
20 4935356 4935357 G A snv GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), CDS, SBN/Ygl (MCW), CDR, WN/N (MCW), MR/N (MCW)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 6969439 6969440 C A snv DOB/Oda (KyushuU), LE/Stm (KyushuU)
20 6969445 6969446 G A snv LE/Stm (KyushuU), DOB/Oda (KyushuU)
20 6969457 6969458 T A snv F344/DuCrlCrlj (KyushuU), F344/Jcl (KyushuU), F344/Stm (KyushuU), F344/NSlc (KyushuU), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW)
20 6969476 6969477 C T snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
20 6969747 6969748 T A snv F344/Stm (KyushuU), F344/Jcl (KyushuU), F344/NSlc (KyushuU), F344/DuCrlCrlj (KyushuU)
20 6969938 6969939 T G snv NIG-III/Hok (KyushuU)
20 6969971 6969972 C A snv FHL/EurMcwi (MCW), LEC/Tj (KyushuU), RCS/Kyo (KyushuU), HTX/Kyo (KyushuU), LE/Stm (KyushuU), BUF/MNa (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), SBN/Ygl (MCW), SBH/Ygl (MCW), ZF (KyushuU), KFRS3B/Kyo (KyushuU)
20 6970266 6970267 G A snv LE/OrlBarth (UDEL)
20 6970355 6970356 C T snv ACI/EurMcwi (MCW), GH/OmrMcwi (MCW), SDLEF7/Barth (UDEL), Crl:SD (UDEL), LE/OrlBarth (UDEL)
20 6970359 6970360 T C snv Crl:SD (UDEL), SDLEF7/Barth (UDEL)
20 6970448 6970449 G T snv LE/OrlBarth (UDEL)
20 6971570 6971571 C A snv NIG-III/Hok (KyushuU)
20 6972452 6972453 G T snv F344/Stm (KyushuU)
20 6972512 6972513 C T snv SDLEF7/Barth (UDEL)
20 6972539 6972540 C T snv SS/JrHsdMcwi (MCW)
20 6972542 6972543 G C snv SDLEF7/Barth (UDEL)
20 6972544 6972545 G T snv GH/OmrMcwi (MCW)
20 6972602 6972603 C G snv BDIX/NemOda (KyushuU), IS-Tlk/Kyo (KyushuU), IS/Kyo (KyushuU), ZFDM (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU)
20 6972632 6972633 C G snv FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), BDIX/NemOda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), KFRS3B/Kyo (KyushuU), ZFDM (KyushuU), ZF (KyushuU)
20 6972638 6972639 C T snv BDIX.Cg-Tal/NemOda (KyushuU), ZFDM (KyushuU)
20 6972671 6972672 G C snv COP/CrCrl (MCW & UW), SS/JrHsdMcwi (MCW)
20 6973042 6973043 G A snv Crl:SD (UDEL)
20 6973053 6973054 G A snv SDLEF7/Barth (UDEL)
20 6973075 6973076 G C snv SDLEF7/Barth (UDEL)
20 6973081 6973082 G A snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW)
20 6973099 6973100 T C snv LE/Stm (KyushuU), F344/NSlc (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), F344/Jcl (KyushuU), F344/DuCrlCrlj (KyushuU), IS/Kyo (KyushuU), SS/JrHsdMcwi (MCW), DOB/Oda (KyushuU), SBH/Ygl (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), SR/JrHsd (MCW)
20 6973105 6973106 C T snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), IS/Kyo (KyushuU), DOB/Oda (KyushuU), LE/Stm (KyushuU), F344/NSlc (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), F344/Jcl (KyushuU), F344/DuCrlCrlj (KyushuU)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 3510192 3510193 G A snv LE/Stm (KNAW)
20 3510204 3510205 T A snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
20 3510223 3510224 C T snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), F344/NRrrc (KNAW)
20 3510477 3510478 C A snv SHRSP/Gcrc (MDC), SHR/NHsd (ICL), SHR/OlaIpcv (ICL), SHRSP/Gcrc (ICL), SHR/OlaIpcv (ICL), GK/Ox (ICL), SHR/OlaIpcv (KNAW)
20 3510703 3510704 C A snv SHRSP/Gcrc (MDC), SHR/OlaIpcv (ICL), SHR/OlaIpcv (KNAW)
20 3510718 3510719 C A snv FHL/EurMcwi (MCW)
20 3511013 3511014 G A snv LCR/1Mco (UMich), HCR/1Mco (UMich)
20 3511083 3511084 G T snv ACI/EurMcwi (MCW), SS/JrHsdMcwi (MCW)
20 3511096 3511097 T C snv SR/JrHsd (MCW)
20 3511102 3511103 C T snv LCR/2Mco (UMich), HCR/2Mco (UMich), LCR/1Mco (UMich), HCR/1Mco (UMich), WKY/NHsd (ICL), WKY/Gcrc (ICL), WKY/NCrl (ICL), WAG/Rij (ICL), SBH/Ygl (ICL), MNS/Gib (ICL), MHS/Gib (ICL), LEW/NCrl (ICL), LEW/Crl (ICL), FHL/EurMcwi (ICL), FHH/EurMcwi (ICL), BBDP/WorN (ICL), ACI/EurMcwi (ICL), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW)
20 3511106 3511107 T C snv SR/JrHsd (MCW)
20 3511205 3511206 C T snv HCR/1Mco (UMich), LCR/2Mco (UMich)
20 3513291 3513292 G T snv GH/OmrMcwi (MCW)
20 3513379 3513380 C G snv ACI/N (KNAW), WN/N (KNAW), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), HCR/1Mco (UMich), LCR/1Mco (UMich), HCR/2Mco (UMich), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), WKY/N (KNAW)
20 3513396 3513397 A G snv LCR/1Mco (UMich), LCR/2Mco (UMich), HCR/1Mco (UMich)
20 3513400 3513401 C A snv LCR/2Mco (UMich)
20 3513418 3513419 G C snv COP/CrCrl (MCW & UW)
20 3513678 3513679 G A snv ACI/EurMcwi (MCW), SR/JrHsd (MCW)
20 3513696 3513697 T C snv COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), SR/JrHsd (MCW)
20 3513702 3513703 C T snv ACI/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), COP/CrCrl (MCW & UW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 3434763 3434764 C A snv BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020)
20 3434953 3434954 G A snv MWF/Hsd (2019), PVG/Seac (2019)
20 3435002 3435003 C A snv FHH/EurMcwi (2019)
20 3435136 3435137 C T snv ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019)
20 3436169 3436170 G A snv ACI/EurMcwi (2019), WKY/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), ACI/N (2020)
20 3436256 3436257 T G snv BXH2/CubMcwi (2020), GK/FarMcwi (2019), SHR/OlalpcvMcwi (2019), HXB31/IpcvMcwi (2019), SHRSP/A3NCrl (2019), HXB2/IpcvMcwi (2019)
20 3436634 3436635 G A snv GK/FarMcwi (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), HXB31/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), BXH2/CubMcwi (2020)
20 3436637 3436638 C G snv MWF/Hsd (2019)
20 3436689 3436690 C G snv FHH/EurMcwi (2019), DA/OlaHsd (2019), ACI/N (2020), ACI/EurMcwi (2019)
20 3436711 3436712 C T snv HXB2/IpcvMcwi (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), PVG/Seac (2019), MWF/Hsd (2019), MR/N (2020), M520/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), WAG/RijCrl (2020), HXB31/IpcvMcwi (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019)
20 3436795 3436796 A C snv FHH/EurMcwi (2019), DA/OlaHsd (2019), ACI/N (2020), ACI/EurMcwi (2019)
20 3436796 3436797 C T snv WAG/RijCrl (2020), MWF/Hsd (2019), MR/N (2020)
20 3436826 3436827 C T snv BXH2/CubMcwi (2020), FHH/EurMcwi (2019), GK/FarMcwi (2019), SHR/OlalpcvMcwi (2019), HXB31/IpcvMcwi (2019), SHRSP/A3NCrl (2019), HXB2/IpcvMcwi (2019)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595868 AgrOrtholog
BioCyc Gene G2FUF-4691 BioCyc
Ensembl Genes ENSRNOG00000000723 Ensembl
  ENSRNOG00000065254 UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000057699.5 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000060980.4 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7379095 IMAGE-MGC_LOAD
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
KEGG Report rno:309607 UniProtKB/TrEMBL
MGC_CLONE MGC:112896 IMAGE-MGC_LOAD
NCBI Gene 309607 ENTREZGENE
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PhenoGen RT1-CE5 PhenoGen
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A8J8YPS9_RAT UniProtKB/TrEMBL
  Q861J1 ENTREZGENE, UniProtKB/TrEMBL
  Q861Q0 ENTREZGENE, UniProtKB/TrEMBL
  Q95II0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7FP91 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-09-15 RT1-CE5  RT1 class I, locus CE5  RT1-CE5  RT1 class I, CE5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 RT1-CE5  RT1 class I, CE5      Symbol and Name status set to provisional 70820 PROVISIONAL