RT1-CE5 (RT1 class I, locus CE5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RT1-CE5 (RT1 class I, locus CE5) Rattus norvegicus
Analyze
Symbol: RT1-CE5
Name: RT1 class I, locus CE5
RGD ID: 1595868
Description: Predicted to enable several functions, including 14-3-3 protein binding activity; TAP binding activity; and beta-2-microglobulin binding activity. Predicted to be involved in several processes, including antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent; antigen processing and presentation of endogenous peptide antigen via MHC class Ib; and regulation of lymphocyte mediated immunity. Predicted to be located in several cellular components, including bounding membrane of organelle; cell surface; and endoplasmic reticulum. Predicted to be part of MHC class Ib protein complex. Predicted to be active in external side of plasma membrane and extracellular space. Human ortholog(s) of this gene implicated in several diseases, including Stevens-Johnson syndrome; acquired immunodeficiency syndrome; artery disease (multiple); hepatitis C; and thromboangiitis obliterans. Orthologous to several human genes including HLA-F (major histocompatibility complex, class I, F); PARTICIPATES IN allograft rejection pathway; antigen processing and presentation pathway; autoimmune thyroiditis pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC112896; MHC class I protein; MHC class Ib antigen; RT1 class I, CE5; RT1 class I, CE7; RT1-C/E5; RT1-CE7; rt1-E2; rt1-El
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,403,418 - 3,479,476 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx203,635,423 - 3,639,599 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_WKY_Bbb_1.0203,853,121 - 3,857,288 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,892,702 - 4,896,993 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,892,702 - 4,896,991 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,968,846 - 6,973,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,509,593 - 3,513,732NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
5-fluorouracil  (ISO)
acetamide  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amphotericin B  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
carbon nanotube  (ISO)
cefotaxime  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
corn oil  (EXP)
Cuprizon  (EXP)
cyclophosphamide  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
disulfiram  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
fulvestrant  (ISO)
gefitinib  (ISO)
gentamycin  (EXP,ISO)
hydrochlorothiazide  (ISO)
isotretinoin  (ISO)
lidocaine  (EXP)
lipopolysaccharide  (ISO)
mifepristone  (ISO)
minocycline  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
pentanal  (ISO)
phenobarbital  (EXP)
pinostrobin  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
Repaglinide  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
saquinavir  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP,ISO)
simvastatin  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
tetrachloromethane  (EXP)
topotecan  (EXP)
tributylstannane  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
valproic acid  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10605026   PMID:10866120   PMID:11238641   PMID:11491540   PMID:12477932   PMID:12837137   PMID:16709803   PMID:19946888   PMID:20865824   PMID:23851683   PMID:24018270   PMID:26928464  
PMID:27455421   PMID:28636952   PMID:29531166  


Genomics

Comparative Map Data
RT1-CE5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,403,418 - 3,479,476 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx203,635,423 - 3,639,599 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_WKY_Bbb_1.0203,853,121 - 3,857,288 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,892,702 - 4,896,993 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,892,702 - 4,896,991 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,968,846 - 6,973,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,509,593 - 3,513,732NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map20p12NCBI
HLA-F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,723,434 - 29,738,532 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl629,722,775 - 29,738,528 (+)EnsemblGRCh38hg38GRCh38
GRCh37629,691,211 - 29,695,073 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,799,096 - 29,803,052 (+)NCBINCBI36Build 36hg18NCBI36
Build 34629,799,219 - 29,802,262NCBI
Celera631,294,546 - 31,298,502 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,494,781 - 29,498,733 (+)NCBIHuRef
CHM1_1629,693,239 - 29,697,195 (+)NCBICHM1_1
T2T-CHM13v2.0629,594,785 - 29,612,450 (+)NCBIT2T-CHM13v2.0
Gm7030
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,438,501 - 36,440,317 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1736,420,611 - 36,440,317 (-)EnsemblGRCm39 Ensembl
GRCm381736,127,609 - 36,129,425 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1736,109,719 - 36,129,425 (-)EnsemblGRCm38mm10GRCm38
MGSCv371736,264,554 - 36,266,370 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,734,700 - 35,737,468 (-)NCBIMGSCv36mm8
Cytogenetic Map17B1NCBI
cM Map1718.94NCBI
DLA-79
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11841,142,312 - 41,170,018 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1841,142,307 - 41,170,100 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1840,176,809 - 40,179,971 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01841,795,844 - 41,823,728 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1841,796,018 - 41,799,523 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11841,261,712 - 41,264,874 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01840,836,984 - 40,840,146 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01841,564,328 - 41,567,490 (+)NCBIUU_Cfam_GSD_1.0
SLA-7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1723,634,731 - 23,638,722 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,613,977 - 27,618,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap7p1.1NCBI

Variants

.
Variants in RT1-CE5
6050 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:386
Count of miRNA genes:227
Interacting mature miRNAs:263
Transcripts:ENSRNOT00000060980
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013624629Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat

Markers in Region
D20Wox23  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0206,994,638 - 6,994,850NCBIRnor5.0
Rnor_5.0206,969,406 - 6,969,629NCBIRnor5.0
RGSC_v3.4203,510,154 - 3,510,376UniSTSRGSC3.4
RGSC_v3.4203,536,556 - 3,536,767UniSTSRGSC3.4
Cytogenetic Map20p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 8 27 11 19 11 2 1 12 13 11
Low 31 30 30 30 8 9 69 23 28 8
Below cutoff 4 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001008843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001033986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF210328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF210329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ243338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ276126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ314857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ315490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ537441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX883046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG963102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG963103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000060980   ⟹   ENSRNOP00000057699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,892,702 - 4,896,991 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,896,031 - 4,896,969 (-)Ensembl
RefSeq Acc Id: NM_001008843   ⟹   NP_001008843
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,475,277 - 3,479,414 (-)NCBI
Rnor_6.0204,892,702 - 4,896,991 (-)NCBI
Rnor_5.0206,968,846 - 6,973,135 (-)NCBI
RGSC_v3.4203,509,593 - 3,513,732 (-)RGD
Celera203,404,618 - 3,422,730 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001033986   ⟹   NP_001029158
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,475,277 - 3,479,414 (-)NCBI
Rnor_6.0204,892,702 - 4,896,991 (-)NCBI
Rnor_5.0206,968,846 - 6,973,135 (-)NCBI
RGSC_v3.4203,509,593 - 3,513,732 (-)RGD
Celera203,404,618 - 3,422,730 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098655   ⟹   XP_038954583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,271 - 3,461,977 (-)NCBI
RefSeq Acc Id: XM_039098656   ⟹   XP_038954584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,271 - 3,461,977 (-)NCBI
RefSeq Acc Id: XM_039098657   ⟹   XP_038954585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,271 - 3,461,973 (-)NCBI
RefSeq Acc Id: XM_039098658   ⟹   XP_038954586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,403,418 - 3,461,971 (-)NCBI
RefSeq Acc Id: XM_039098659   ⟹   XP_038954587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,457,971 - 3,461,976 (-)NCBI
RefSeq Acc Id: XM_039098660   ⟹   XP_038954588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,457,971 - 3,479,476 (-)NCBI
RefSeq Acc Id: XM_039098661   ⟹   XP_038954589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,617 - 3,437,237 (-)NCBI
RefSeq Acc Id: XM_039098662   ⟹   XP_038954590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,271 - 3,461,975 (-)NCBI
RefSeq Acc Id: XM_039098663   ⟹   XP_038954591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,457,971 - 3,461,976 (-)NCBI
RefSeq Acc Id: XM_039098664   ⟹   XP_038954592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,617 - 3,437,237 (-)NCBI
RefSeq Acc Id: XM_039098665   ⟹   XP_038954593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,403,424 - 3,437,237 (-)NCBI
RefSeq Acc Id: XM_039098666   ⟹   XP_038954594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,457,971 - 3,461,975 (-)NCBI
RefSeq Acc Id: XM_039098667   ⟹   XP_038954595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,475,277 - 3,479,476 (-)NCBI
RefSeq Acc Id: XM_039098669   ⟹   XP_038954597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,617 - 3,437,237 (-)NCBI
RefSeq Acc Id: XM_039098670   ⟹   XP_038954598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,457,971 - 3,461,975 (-)NCBI
RefSeq Acc Id: XM_039098671   ⟹   XP_038954599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,475,277 - 3,479,476 (-)NCBI
RefSeq Acc Id: XM_039098672   ⟹   XP_038954600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,431,509 - 3,437,237 (-)NCBI
RefSeq Acc Id: XM_039098673   ⟹   XP_038954601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,617 - 3,437,237 (-)NCBI
RefSeq Acc Id: XR_005497231
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,417,617 - 3,437,237 (-)NCBI
RefSeq Acc Id: XR_005497232
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,431,509 - 3,437,237 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001008843 (Get FASTA)   NCBI Sequence Viewer  
  NP_001029158 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954583 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954584 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954585 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954586 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954587 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954588 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954590 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954591 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954592 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954593 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954594 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954595 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954597 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954598 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954599 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954600 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954601 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98841 (Get FASTA)   NCBI Sequence Viewer  
  AVP72132 (Get FASTA)   NCBI Sequence Viewer  
  AVP72133 (Get FASTA)   NCBI Sequence Viewer  
  CAB46085 (Get FASTA)   NCBI Sequence Viewer  
  CAB86228 (Get FASTA)   NCBI Sequence Viewer  
  CAC48028 (Get FASTA)   NCBI Sequence Viewer  
  CAC85699 (Get FASTA)   NCBI Sequence Viewer  
  CAD60939 (Get FASTA)   NCBI Sequence Viewer  
  CAD60940 (Get FASTA)   NCBI Sequence Viewer  
  CAD60941 (Get FASTA)   NCBI Sequence Viewer  
  CAD60942 (Get FASTA)   NCBI Sequence Viewer  
  CAD60943 (Get FASTA)   NCBI Sequence Viewer  
  CAD60944 (Get FASTA)   NCBI Sequence Viewer  
  CAD60946 (Get FASTA)   NCBI Sequence Viewer  
  CAE84011 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000075633.2
RefSeq Acc Id: NP_001008843   ⟸   NM_001008843
- Peptide Label: isoform 1 precursor
- UniProtKB: Q861Q0 (UniProtKB/TrEMBL),   A6KUT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029158   ⟸   NM_001033986
- Peptide Label: isoform 2 precursor
- UniProtKB: Q95II0 (UniProtKB/TrEMBL),   F7FP91 (UniProtKB/TrEMBL),   A6KUT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000057699   ⟸   ENSRNOT00000060980
RefSeq Acc Id: XP_038954586   ⟸   XM_039098658
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038954593   ⟸   XM_039098665
- Peptide Label: isoform X11
- UniProtKB: A0A2P1NRY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954584   ⟸   XM_039098656
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038954583   ⟸   XM_039098655
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954590   ⟸   XM_039098662
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038954585   ⟸   XM_039098657
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038954601   ⟸   XM_039098673
- Peptide Label: isoform X18
- UniProtKB: D3ZLE6 (UniProtKB/TrEMBL),   A0A2P1NRY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954597   ⟸   XM_039098669
- Peptide Label: isoform X14
- UniProtKB: A0A2P1NRY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954592   ⟸   XM_039098664
- Peptide Label: isoform X10
- UniProtKB: A0A2P1NRY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954589   ⟸   XM_039098661
- Peptide Label: isoform X7
- UniProtKB: A0A2P1NRY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954600   ⟸   XM_039098672
- Peptide Label: isoform X17
- UniProtKB: D3ZLE6 (UniProtKB/TrEMBL),   A0A2P1NRY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954588   ⟸   XM_039098660
- Peptide Label: isoform X6
- UniProtKB: F7FP91 (UniProtKB/TrEMBL),   Q95II0 (UniProtKB/TrEMBL),   A6KUT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954591   ⟸   XM_039098663
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038954587   ⟸   XM_039098659
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038954598   ⟸   XM_039098670
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038954594   ⟸   XM_039098666
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038954599   ⟸   XM_039098671
- Peptide Label: isoform X16
- UniProtKB: A6KUT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954595   ⟸   XM_039098667
- Peptide Label: isoform X13
- UniProtKB: A6KUT7 (UniProtKB/TrEMBL)
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q95II0-F1-model_v2 AlphaFold Q95II0 1-375 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701371
Promoter ID:EPDNEW_R11894
Type:initiation region
Name:RT1-CE5_1
Description:RT1 class I, locus CE5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11896  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,896,966 - 4,897,026EPDNEW
RGD ID:13701376
Promoter ID:EPDNEW_R11895
Type:initiation region
Name:RT1-CE7_2
Description:RT1 class I, locus CE7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11886  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,896,984 - 4,897,044EPDNEW
RGD ID:13701373
Promoter ID:EPDNEW_R11896
Type:initiation region
Name:RT1-CE5_2
Description:RT1 class I, locus CE5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11894  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,897,018 - 4,897,078EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595868 AgrOrtholog
BioCyc Gene G2FUF-4691 BioCyc
Ensembl Genes ENSRNOG00000000723 Ensembl
  ENSRNOG00000038999 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078972.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7379095 IMAGE-MGC_LOAD
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
KEGG Report rno:309607 UniProtKB/TrEMBL
MGC_CLONE MGC:112896 IMAGE-MGC_LOAD
NCBI Gene 309607 ENTREZGENE
PANTHER CLASS IB MHC ANTIGEN QA-2-RELATED UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PhenoGen RT1-CE5 PhenoGen
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000723 RatGTEx
  ENSRNOG00000038999 RatGTEx
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A2P1NRY1 ENTREZGENE, UniProtKB/TrEMBL
  A6KUT7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZLE6 ENTREZGENE, UniProtKB/TrEMBL
  F7FP91 ENTREZGENE
  Q861J1_RAT UniProtKB/TrEMBL
  Q861Q0 ENTREZGENE, UniProtKB/TrEMBL
  Q95II0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7FP91 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-09-15 RT1-CE5  RT1 class I, locus CE5  RT1-CE5  RT1 class I, CE5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 RT1-CE5  RT1 class I, CE5      Symbol and Name status set to provisional 70820 PROVISIONAL