Kifc1 (kinesin family member C1) - Rat Genome Database

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Gene: Kifc1 (kinesin family member C1) Rattus norvegicus
Analyze
Symbol: Kifc1
Name: kinesin family member C1
RGD ID: 1359118
Description: Predicted to enable ATP hydrolysis activity; microtubule binding activity; and minus-end-directed microtubule motor activity. Involved in spermatogenesis. Predicted to be located in endocytic vesicle and spindle pole centrosome. Predicted to be part of kinesin complex. Predicted to be active in microtubule cytoskeleton and nucleus. Orthologous to human KIFC1 (kinesin family member C1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: kinesin-like protein KIFC1; kinesin-related protein 1; kinesin-related protein KRP1; MGC94918
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2204,998,832 - 5,017,107 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,999,047 - 5,017,105 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,722,546 - 5,742,381 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0205,084,291 - 5,104,118 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0205,564,478 - 5,582,550 (+)NCBIRnor_WKY
Rnor_6.0205,509,059 - 5,526,175 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,509,059 - 5,526,175 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,567,671 - 7,585,188 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,150,810 - 5,169,264 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,151,036 - 5,169,489 (+)NCBI
Celera206,581,869 - 6,599,528 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cocaine  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP)
cyclosporin A  (EXP,ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (EXP)
diethyl maleate  (EXP)
dioxygen  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
fenofibrate  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
lidocaine  (EXP)
linezolid  (EXP)
lithium atom  (EXP)
lithium hydride  (EXP)
lucanthone  (ISO)
MeIQx  (ISO)
mercury dichloride  (EXP)
methamphetamine  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
niclosamide  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
phenanthridone  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
quercetin  (EXP)
silicon dioxide  (ISO)
sirolimus  (EXP)
sodium arsenite  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
thapsigargin  (EXP)
thioacetamide  (EXP)
titanium dioxide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
6. C-terminal kinesin motor KIFC1 participates in acrosome biogenesis and vesicle transport. Yang WX and Sperry AO, Biol Reprod 2003 Nov;69(5):1719-29. Epub 2003 Jun 25.
7. The molecular motor KIFC1 associates with a complex containing nucleoporin NUP62 that is regulated during development and by the small GTPase RAN. Yang WX, etal., Biol Reprod. 2006 Apr;74(4):684-90. Epub 2005 Dec 21.
Additional References at PubMed
PMID:8688559   PMID:15843429   PMID:19946888   PMID:30804089  


Genomics

Comparative Map Data
Kifc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2204,998,832 - 5,017,107 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,999,047 - 5,017,105 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,722,546 - 5,742,381 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0205,084,291 - 5,104,118 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0205,564,478 - 5,582,550 (+)NCBIRnor_WKY
Rnor_6.0205,509,059 - 5,526,175 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,509,059 - 5,526,175 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,567,671 - 7,585,188 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,150,810 - 5,169,264 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,151,036 - 5,169,489 (+)NCBI
Celera206,581,869 - 6,599,528 (+)NCBICelera
Cytogenetic Map20p12NCBI
KIFC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,391,461 - 33,409,896 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl633,391,823 - 33,409,896 (+)EnsemblGRCh38hg38GRCh38
GRCh37633,359,600 - 33,377,673 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,467,583 - 33,485,625 (+)NCBINCBI36Build 36hg18NCBI36
Celera634,913,703 - 34,932,095 (+)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef633,101,381 - 33,119,773 (+)NCBIHuRef
CHM1_1633,361,187 - 33,379,567 (+)NCBICHM1_1
T2T-CHM13v2.0633,213,185 - 33,231,258 (+)NCBIT2T-CHM13v2.0
Kifc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,094,638 - 34,109,607 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,094,633 - 34,109,635 (-)EnsemblGRCm39 Ensembl
GRCm381733,875,664 - 33,890,633 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,875,659 - 33,890,661 (-)EnsemblGRCm38mm10GRCm38
MGSCv371734,012,611 - 34,027,600 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361727,054,036 - 27,069,524 (+)NCBIMGSCv36mm8
Celera1736,628,582 - 36,643,546 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Kifc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,923,506 - 1,940,970 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,923,136 - 1,941,094 (+)NCBIChiLan1.0ChiLan1.0
KIFC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1634,081,586 - 34,100,591 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl634,078,842 - 34,100,373 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0632,971,033 - 32,989,129 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
KIFC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,808,374 - 2,821,203 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,808,705 - 2,821,217 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,889,201 - 2,901,948 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0123,140,027 - 3,152,781 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl123,140,220 - 3,152,876 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,807,166 - 2,819,907 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,888,268 - 2,901,012 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,986,376 - 2,999,127 (+)NCBIUU_Cfam_GSD_1.0
Kifc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,457,125 - 38,472,793 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,487,503 - 25,546,359 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647625,488,426 - 25,503,135 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIFC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl729,694,778 - 29,713,712 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1729,692,775 - 29,713,716 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2734,198,547 - 34,212,734 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIFC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,656,517 - 38,675,056 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,656,246 - 38,674,470 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604433,240,536 - 33,258,617 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kifc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,410,007 - 23,413,902 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,405,951 - 23,421,696 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kifc1
126 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:47
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000065349
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2046066076691706Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
7175096Tcs1T cell selection QTL 1T cell selectionexpression2047270785024580Rat

Markers in Region
UniSTS:236125  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2205,011,213 - 5,011,477 (+)MAPPERmRatBN7.2
Rnor_6.0205,520,294 - 5,520,557NCBIRnor6.0
Rnor_5.0207,579,303 - 7,579,566UniSTSRnor5.0
RGSC_v3.4205,163,379 - 5,163,642UniSTSRGSC3.4
Celera206,593,643 - 6,593,906UniSTS
Cytogenetic Map20p12UniSTS
UniSTS:463415  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2205,009,883 - 5,011,077 (+)MAPPERmRatBN7.2
Rnor_6.0205,518,964 - 5,520,157NCBIRnor6.0
Rnor_5.0207,577,973 - 7,579,166UniSTSRnor5.0
RGSC_v3.4205,162,049 - 5,163,242UniSTSRGSC3.4
Celera206,592,313 - 6,593,506UniSTS
Cytogenetic Map20p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 29 22 17 22 39 26 36
Low 16 24 15 2 15 6 9 33 9 5 11 6
Below cutoff 1 4 4 4 2 2 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000065349   ⟹   ENSRNOP00000061875
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,999,047 - 5,017,102 (+)Ensembl
Rnor_6.0 Ensembl205,509,059 - 5,526,175 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000092584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,519,216 - 5,519,923 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095546   ⟹   ENSRNOP00000087209
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,999,367 - 5,017,105 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103176   ⟹   ENSRNOP00000087122
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,999,060 - 5,017,105 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114906   ⟹   ENSRNOP00000092623
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,999,047 - 5,012,147 (+)Ensembl
RefSeq Acc Id: NM_001005878   ⟹   NP_001005878
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,999,060 - 5,017,107 (+)NCBI
Rnor_6.0205,509,059 - 5,526,175 (+)NCBI
Rnor_5.0207,567,671 - 7,585,188 (+)NCBI
RGSC_v3.4205,150,810 - 5,169,264 (+)RGD
Celera206,581,869 - 6,599,528 (+)RGD
Sequence:
RefSeq Acc Id: XM_039098508   ⟹   XP_038954436
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,998,832 - 5,017,107 (+)NCBI
RefSeq Acc Id: XM_039098509   ⟹   XP_038954437
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,999,370 - 5,017,107 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001005878 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954436 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954437 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB88699 (Get FASTA)   NCBI Sequence Viewer  
  AAH83827 (Get FASTA)   NCBI Sequence Viewer  
  Q5XI63 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001005878   ⟸   NM_001005878
- UniProtKB: O54719 (UniProtKB/Swiss-Prot),   Q5XI63 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000061875   ⟸   ENSRNOT00000065349
RefSeq Acc Id: XP_038954436   ⟸   XM_039098508
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954437   ⟸   XM_039098509
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000087122   ⟸   ENSRNOT00000103176
RefSeq Acc Id: ENSRNOP00000087209   ⟸   ENSRNOT00000095546
RefSeq Acc Id: ENSRNOP00000092623   ⟸   ENSRNOT00000114906
Protein Domains
Kinesin motor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XI63-F1-model_v2 AlphaFold Q5XI63 1-693 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701417
Promoter ID:EPDNEW_R11941
Type:initiation region
Name:Kifc1_1
Description:kinesin family member C1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,509,066 - 5,509,126EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359118 AgrOrtholog
BioCyc Gene G2FUF-4506 BioCyc
Ensembl Genes ENSRNOG00000000479 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000061875 ENTREZGENE
  ENSRNOP00000061875.3 UniProtKB/TrEMBL
  ENSRNOP00000087122.1 UniProtKB/TrEMBL
  ENSRNOP00000087209 ENTREZGENE
  ENSRNOP00000087209.1 UniProtKB/TrEMBL
  ENSRNOP00000092623.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065349 ENTREZGENE
  ENSRNOT00000065349.4 UniProtKB/TrEMBL
  ENSRNOT00000095546 ENTREZGENE
  ENSRNOT00000095546.1 UniProtKB/TrEMBL
  ENSRNOT00000103176.1 UniProtKB/TrEMBL
  ENSRNOT00000114906.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.850.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112250 IMAGE-MGC_LOAD
InterPro Kinesin_motor_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:294286 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94918 IMAGE-MGC_LOAD
NCBI Gene 294286 ENTREZGENE
Pfam Kinesin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kifc1 PhenoGen
PRINTS KINESINHEAVY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KISc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AVX0_RAT UniProtKB/TrEMBL
  A0A8I6GEU0_RAT UniProtKB/TrEMBL
  A0A8I6GEW9_RAT UniProtKB/TrEMBL
  A0A8L2QUA0_RAT UniProtKB/TrEMBL
  KIFC1_RAT UniProtKB/Swiss-Prot
  O54719 ENTREZGENE
  Q5XI63 ENTREZGENE
UniProt Secondary O54719 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Kifc1  kinesin family member C1      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Kifc1  kinesin family member C1      Symbol and Name status set to provisional 70820 PROVISIONAL