Stk19 (serine/threonine kinase 19) - Rat Genome Database

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Gene: Stk19 (serine/threonine kinase 19) Rattus norvegicus
Analyze
Symbol: Stk19
Name: serine/threonine kinase 19
RGD ID: 1359601
Description: Predicted to enable protein serine/threonine kinase activity and small GTPase binding activity. Predicted to be involved in positive regulation of Ras protein signal transduction and protein phosphorylation. Predicted to be located in nuclear speck. Orthologous to human STK19 (serine/threonine kinase 19); INTERACTS WITH 2,4-dinitrotoluene; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: serine/threonine-protein kinase 19
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Stk19-ps  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,995,590 - 4,005,117 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl203,995,587 - 4,005,116 (+)Ensembl
Rnor_6.0204,317,440 - 4,517,128 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0206,396,796 - 6,596,927 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,095,981 - 4,105,509 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1204,096,207 - 4,105,735 (+)NCBI
Celera204,025,587 - 4,035,112 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The G11 gene located in the major histocompatibility complex encodes a novel nuclear serine/threonine protein kinase. Gomez-Escobar N, etal., J Biol Chem 1998 Nov 20;273(47):30954-60.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
6. Physical mapping of the major histocompatibility complex class II and class III regions of the rat. Walter L, etal., Immunogenetics 2002 Jul;54(4):268-75. Epub 2002 Jun 14.
Additional References at PubMed
PMID:30712867  


Genomics

Comparative Map Data
Stk19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,995,590 - 4,005,117 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl203,995,587 - 4,005,116 (+)Ensembl
Rnor_6.0204,317,440 - 4,517,128 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0206,396,796 - 6,596,927 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,095,981 - 4,105,509 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1204,096,207 - 4,105,735 (+)NCBI
Celera204,025,587 - 4,035,112 (-)NCBICelera
Cytogenetic Map20p12NCBI
STK19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,971,175 - 31,981,446 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl631,971,091 - 31,982,821 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,938,952 - 31,949,223 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,047,625 - 32,057,202 (+)NCBINCBI36hg18NCBI36
Build 34632,047,624 - 32,057,202NCBI
Celera633,538,714 - 33,548,985 (+)NCBI
Cytogenetic Map6p21.33NCBI
HuRef631,725,889 - 31,736,233 (+)NCBIHuRef
CHM1_1631,941,033 - 31,951,304 (+)NCBICHM1_1
T2T-CHM13v2.0631,824,380 - 31,834,652 (+)NCBI
Stk19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,042,969 - 35,055,879 (-)NCBIGRCm39mm39
GRCm39 Ensembl1735,042,969 - 35,055,921 (-)Ensembl
GRCm381734,823,993 - 34,836,903 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,823,993 - 34,836,945 (-)EnsemblGRCm38mm10GRCm38
MGSCv371734,960,938 - 34,973,848 (-)NCBIGRCm37mm9NCBIm37
MGSCv361734,432,049 - 34,444,959 (-)NCBImm8
Celera1737,919,308 - 37,932,232 (-)NCBICelera
Cytogenetic Map17B1NCBI
Stk19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437485,110 - 492,493 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955437485,110 - 492,493 (+)NCBIChiLan1.0ChiLan1.0
LOC100989926
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,519,250 - 32,526,782 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,519,252 - 32,526,782 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,666,381 - 31,667,410 (+)NCBIMhudiblu_PPA_v0panPan3
LOC488436
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13627,227,496 - 27,228,457 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3627,125,447 - 27,126,267 (-)NCBI
ROS_Cfam_1.03627,384,792 - 27,385,376 (-)NCBI
UMICH_Zoey_3.13627,507,298 - 27,507,896 (-)NCBI
UNSW_CanFamBas_1.03627,441,589 - 27,442,173 (-)NCBI
UU_Cfam_GSD_1.03627,591,797 - 27,592,381 (-)NCBI
Stk19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,984,559 - 35,990,696 (+)NCBI
SpeTri2.0NW_0049367271,570,650 - 1,576,796 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STK19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl724,059,452 - 24,067,383 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1724,060,226 - 24,067,398 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,744,802 - 27,751,975 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STK19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,042,264 - 40,049,983 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,009,273 - 40,049,936 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604431,888,740 - 31,895,348 (+)NCBIVero_WHO_p1.0
Stk19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,271,875 - 24,280,939 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462475424,271,284 - 24,280,963 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D20Got102  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,146,373 - 4,146,535 (-)MAPPERmRatBN7.2
Rnor_6.0204,367,694 - 4,367,855NCBIRnor6.0
Rnor_5.0206,447,050 - 6,447,211UniSTSRnor5.0
RGSC_v3.4204,248,837 - 4,248,998UniSTSRGSC3.4
Celera203,883,668 - 3,883,842UniSTS
Cytogenetic Map20p12UniSTS
D20Yum62  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,127,533 - 4,127,683 (-)MAPPERmRatBN7.2
Rnor_6.0204,386,543 - 4,386,692NCBIRnor6.0
Rnor_5.0206,465,899 - 6,466,048UniSTSRnor5.0
RGSC_v3.4204,229,412 - 4,229,561UniSTSRGSC3.4
Celera203,902,577 - 3,902,730UniSTS
Cytogenetic Map20p12UniSTS
D20Yum58  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,998,581 - 3,998,751 (-)MAPPERmRatBN7.2
Rnor_6.0204,513,967 - 4,514,136NCBIRnor6.0
Rnor_5.0206,593,766 - 6,593,935UniSTSRnor5.0
RGSC_v3.4204,098,973 - 4,099,142UniSTSRGSC3.4
Celera204,031,953 - 4,032,120UniSTS
Cytogenetic Map20p12UniSTS
D20Yum61  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,099,411 - 4,099,577 (-)MAPPERmRatBN7.2
Rnor_6.0204,413,628 - 4,413,793NCBIRnor6.0
Rnor_5.0206,492,984 - 6,493,149UniSTSRnor5.0
RGSC_v3.4204,200,675 - 4,200,840UniSTSRGSC3.4
Celera203,930,624 - 3,930,789UniSTS
Cytogenetic Map20p12UniSTS
D20Yum63  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,171,433 - 4,171,590 (-)MAPPERmRatBN7.2
Rnor_6.0204,342,640 - 4,342,796NCBIRnor6.0
Rnor_5.0206,421,996 - 6,422,152UniSTSRnor5.0
RGSC_v3.4204,274,327 - 4,274,483UniSTSRGSC3.4
Celera203,858,677 - 3,858,833UniSTS
Cytogenetic Map20p12UniSTS
D20Yum59  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,031,068 - 4,031,242 (-)MAPPERmRatBN7.2
Rnor_6.0204,481,956 - 4,482,129NCBIRnor6.0
Rnor_5.0206,561,312 - 6,561,485UniSTSRnor5.0
RGSC_v3.4204,132,407 - 4,132,580UniSTSRGSC3.4
Celera203,998,885 - 3,999,058UniSTS
Cytogenetic Map20p12UniSTS
D20Yum60  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,057,277 - 4,057,419 (-)MAPPERmRatBN7.2
mRatBN7.2204,057,158 - 4,057,419 (-)MAPPERmRatBN7.2
Rnor_6.0204,455,780 - 4,456,040NCBIRnor6.0
Rnor_6.0204,455,780 - 4,455,921NCBIRnor6.0
Rnor_5.0206,535,136 - 6,535,277UniSTSRnor5.0
Rnor_5.0206,535,136 - 6,535,396UniSTSRnor5.0
RGSC_v3.4204,158,629 - 4,158,770UniSTSRGSC3.4
Celera203,972,709 - 3,972,969UniSTS
Celera203,972,709 - 3,972,850UniSTS
Cytogenetic Map20p12UniSTS
RH138792  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,099,916 - 4,100,062 (-)MAPPERmRatBN7.2
Rnor_6.0204,413,143 - 4,413,288NCBIRnor6.0
Rnor_5.0206,492,499 - 6,492,644UniSTSRnor5.0
RGSC_v3.4204,201,180 - 4,201,325UniSTSRGSC3.4
Celera203,930,139 - 3,930,284UniSTS
RH 3.4 Map2053.23UniSTS
Cytogenetic Map20p12UniSTS
BF390804  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,136,626 - 4,136,811 (-)MAPPERmRatBN7.2
Rnor_6.0204,377,418 - 4,377,602NCBIRnor6.0
Rnor_5.0206,456,774 - 6,456,958UniSTSRnor5.0
RGSC_v3.4204,238,468 - 4,238,652UniSTSRGSC3.4
Celera203,893,443 - 3,893,627UniSTS
RH 3.4 Map2053.1UniSTS
Cytogenetic Map20p12UniSTS
RH131882  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,118,003 - 4,118,153 (-)MAPPERmRatBN7.2
Rnor_6.0204,396,075 - 4,396,224NCBIRnor6.0
Rnor_5.0206,475,431 - 6,475,580UniSTSRnor5.0
RGSC_v3.4204,219,884 - 4,220,033UniSTSRGSC3.4
Celera203,912,108 - 3,912,257UniSTS
RH 3.4 Map2053.02UniSTS
Cytogenetic Map20p12UniSTS
RH133069  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,157,191 - 4,157,392 (-)MAPPERmRatBN7.2
Rnor_6.0204,356,838 - 4,357,038NCBIRnor6.0
Rnor_5.0206,436,194 - 6,436,394UniSTSRnor5.0
RGSC_v3.4204,259,952 - 4,260,152UniSTSRGSC3.4
Celera203,872,889 - 3,873,089UniSTS
RH 3.4 Map2052.92UniSTS
Cytogenetic Map20p12UniSTS
RH133750  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,147,793 - 4,147,984 (-)MAPPERmRatBN7.2
Rnor_6.0204,366,245 - 4,366,435NCBIRnor6.0
Rnor_5.0206,445,601 - 6,445,791UniSTSRnor5.0
RGSC_v3.4204,250,257 - 4,250,447UniSTSRGSC3.4
Celera203,882,219 - 3,882,409UniSTS
RH 3.4 Map2053.3UniSTS
Cytogenetic Map20p12UniSTS
RH94616  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,026,509 - 4,026,599 (-)MAPPERmRatBN7.2
Rnor_6.0204,486,543 - 4,486,632NCBIRnor6.0
Rnor_5.0206,565,899 - 6,565,988UniSTSRnor5.0
RGSC_v3.4204,128,105 - 4,128,194UniSTSRGSC3.4
Celera204,003,501 - 4,003,590UniSTS
RH 3.4 Map2052.42UniSTS
Cytogenetic Map20p12UniSTS
BI284306  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,136,385 - 4,136,591 (-)MAPPERmRatBN7.2
Rnor_6.0204,377,638 - 4,377,843NCBIRnor6.0
Rnor_5.0206,456,994 - 6,457,199UniSTSRnor5.0
RGSC_v3.4204,238,227 - 4,238,432UniSTSRGSC3.4
Celera203,893,663 - 3,893,868UniSTS
RH 3.4 Map2053.02UniSTS
Cytogenetic Map20p12UniSTS
BE113482  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,180,709 - 4,180,860 (-)MAPPERmRatBN7.2
Rnor_6.0204,333,399 - 4,333,549NCBIRnor6.0
Rnor_5.0206,412,755 - 6,412,905UniSTSRnor5.0
RGSC_v3.4204,283,559 - 4,283,709UniSTSRGSC3.4
Celera203,850,103 - 3,850,253UniSTS
RH 3.4 Map2052.4UniSTS
Cytogenetic Map20p12UniSTS
BF405332  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,124,633 - 4,125,169 (-)MAPPERmRatBN7.2
Rnor_6.0204,389,057 - 4,389,592NCBIRnor6.0
Rnor_5.0206,468,413 - 6,468,948UniSTSRnor5.0
RGSC_v3.4204,226,512 - 4,227,047UniSTSRGSC3.4
Celera203,905,092 - 3,905,627UniSTS
RH 3.4 Map2055.93UniSTS
Cytogenetic Map20p12UniSTS
BE115494  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,090,976 - 4,091,188 (-)MAPPERmRatBN7.2
Rnor_6.0204,422,016 - 4,422,227NCBIRnor6.0
Rnor_5.0206,501,372 - 6,501,583UniSTSRnor5.0
RGSC_v3.4204,192,241 - 4,192,452UniSTSRGSC3.4
Celera203,939,012 - 3,939,223UniSTS
RH 3.4 Map2054.03UniSTS
Cytogenetic Map20p12UniSTS
BF413235  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,076,693 - 4,076,894 (-)MAPPERmRatBN7.2
Rnor_6.0204,436,307 - 4,436,507NCBIRnor6.0
Rnor_5.0206,515,663 - 6,515,863UniSTSRnor5.0
RGSC_v3.4204,177,961 - 4,178,161UniSTSRGSC3.4
Celera203,953,384 - 3,953,584UniSTS
RH 3.4 Map2052.92UniSTS
Cytogenetic Map20p12UniSTS
PMC162222P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,149,485 - 4,150,413 (-)MAPPERmRatBN7.2
Rnor_6.0204,363,817 - 4,364,744NCBIRnor6.0
Rnor_5.0206,443,173 - 6,444,100UniSTSRnor5.0
RGSC_v3.4204,251,948 - 4,252,875UniSTSRGSC3.4
Celera203,879,791 - 3,880,718UniSTS
Cytogenetic Map20p12UniSTS
RH134814  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,026,558 - 4,026,742 (-)MAPPERmRatBN7.2
Rnor_6.0204,486,400 - 4,486,583NCBIRnor6.0
Rnor_5.0206,565,756 - 6,565,939UniSTSRnor5.0
RGSC_v3.4204,128,154 - 4,128,337UniSTSRGSC3.4
Celera204,003,358 - 4,003,541UniSTS
Cytogenetic Map20p12UniSTS
RH135211  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,136,183 - 4,136,397 (-)MAPPERmRatBN7.2
Rnor_6.0204,377,832 - 4,378,045NCBIRnor6.0
Rnor_5.0206,457,188 - 6,457,401UniSTSRnor5.0
RGSC_v3.4204,238,025 - 4,238,238UniSTSRGSC3.4
Celera203,893,857 - 3,894,070UniSTS
RH 3.4 Map2053.33UniSTS
Cytogenetic Map20p12UniSTS
RH139089  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,161,338 - 4,161,713 (-)MAPPERmRatBN7.2
Rnor_6.0204,352,517 - 4,352,891NCBIRnor6.0
Rnor_5.0206,431,873 - 6,432,247UniSTSRnor5.0
RGSC_v3.4204,264,099 - 4,264,473UniSTSRGSC3.4
Celera203,868,568 - 3,868,942UniSTS
RH 3.4 Map2052.0UniSTS
Cytogenetic Map20p12UniSTS
RH139384  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,135,796 - 4,136,000 (-)MAPPERmRatBN7.2
Rnor_6.0204,378,229 - 4,378,432NCBIRnor6.0
Rnor_5.0206,457,585 - 6,457,788UniSTSRnor5.0
RGSC_v3.4204,237,638 - 4,237,841UniSTSRGSC3.4
Celera203,894,254 - 3,894,457UniSTS
Cytogenetic Map20p12UniSTS
RH140482  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,132,361 - 4,132,493 (-)MAPPERmRatBN7.2
Rnor_6.0204,381,736 - 4,381,867NCBIRnor6.0
Rnor_5.0206,461,092 - 6,461,223UniSTSRnor5.0
RGSC_v3.4204,234,241 - 4,234,372UniSTSRGSC3.4
Celera203,897,765 - 3,897,896UniSTS
Cytogenetic Map20p12UniSTS
AI453961  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,148,217 - 4,148,512 (-)MAPPERmRatBN7.2
Rnor_6.0204,365,717 - 4,366,011NCBIRnor6.0
Rnor_5.0206,445,073 - 6,445,367UniSTSRnor5.0
RGSC_v3.4204,250,681 - 4,250,975UniSTSRGSC3.4
Celera203,881,691 - 3,881,985UniSTS
RH 3.4 Map2053.83UniSTS
Cytogenetic Map20p12UniSTS
BE119939  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,147,499 - 4,147,668 (-)MAPPERmRatBN7.2
Rnor_6.0204,366,561 - 4,366,729NCBIRnor6.0
Rnor_5.0206,445,917 - 6,446,085UniSTSRnor5.0
RGSC_v3.4204,249,963 - 4,250,131UniSTSRGSC3.4
Celera203,882,535 - 3,882,703UniSTS
RH 3.4 Map2052.1UniSTS
Cytogenetic Map20p12UniSTS
AI176804  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,151,744 - 4,151,845 (-)MAPPERmRatBN7.2
Rnor_6.0204,362,385 - 4,362,485NCBIRnor6.0
Rnor_5.0206,441,741 - 6,441,841UniSTSRnor5.0
RGSC_v3.4204,254,207 - 4,254,307UniSTSRGSC3.4
Celera203,878,359 - 3,878,459UniSTS
RH 3.4 Map2052.92UniSTS
Cytogenetic Map20p12UniSTS
AI013941  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,087,098 - 4,087,326 (-)MAPPERmRatBN7.2
Rnor_6.0204,425,878 - 4,426,105NCBIRnor6.0
Rnor_5.0206,505,234 - 6,505,461UniSTSRnor5.0
RGSC_v3.4204,188,363 - 4,188,590UniSTSRGSC3.4
Celera203,942,874 - 3,943,101UniSTS
Cytogenetic Map20p12UniSTS
MARC_5887-5888:991939775:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,154,572 - 4,155,304 (-)MAPPERmRatBN7.2
Rnor_6.0204,358,926 - 4,359,657NCBIRnor6.0
Rnor_5.0206,438,282 - 6,439,013UniSTSRnor5.0
RGSC_v3.4204,257,035 - 4,257,766UniSTSRGSC3.4
Celera203,874,900 - 3,875,631UniSTS
Cytogenetic Map20p12UniSTS
RH124332  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,132,455 - 4,132,618 (-)MAPPERmRatBN7.2
Rnor_6.0204,381,611 - 4,381,773NCBIRnor6.0
Rnor_5.0206,460,967 - 6,461,129UniSTSRnor5.0
RGSC_v3.4204,234,335 - 4,234,497UniSTSRGSC3.4
Celera203,897,640 - 3,897,802UniSTS
Cytogenetic Map20p12UniSTS
UniSTS:237630  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,099,920 - 4,100,134 (-)MAPPERmRatBN7.2
Rnor_6.0204,413,071 - 4,413,284NCBIRnor6.0
Rnor_5.0206,492,427 - 6,492,640UniSTSRnor5.0
RGSC_v3.4204,201,184 - 4,201,397UniSTSRGSC3.4
Celera203,930,067 - 3,930,280UniSTS
Cytogenetic Map20p12UniSTS
UniSTS:465467  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,161,676 - 4,162,237 (-)MAPPERmRatBN7.2
Rnor_6.0204,351,993 - 4,352,553NCBIRnor6.0
Rnor_5.0206,431,349 - 6,431,909UniSTSRnor5.0
RGSC_v3.4204,264,437 - 4,265,274UniSTSRGSC3.4
Celera203,868,044 - 3,868,604UniSTS
Cytogenetic Map20p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2036216564606812Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:255
Count of miRNA genes:170
Interacting mature miRNAs:189
Transcripts:ENSRNOT00000000484, ENSRNOT00000072446
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: NM_001013197   ⟹   NP_001013215
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,995,590 - 4,005,117 (+)NCBI
Rnor_6.0204,317,440 - 4,517,128 (-)NCBI
Rnor_5.0206,396,796 - 6,596,927 (-)NCBI
RGSC_v3.4204,095,981 - 4,105,509 (+)RGD
Celera204,025,587 - 4,035,112 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001013215   ⟸   NM_001013197
- UniProtKB: Q6P7Q3 (UniProtKB/TrEMBL)
- Sequence:

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 4332875 4332876 G T snv M520/N (MCW), Buf/N (MCW)
20 4333268 4333269 A C snv SR/JrHsd (RGD)
20 4333413 4333414 T C snv WN/N (MCW), M520/N (MCW), WKY/N (MCW), ACI/N (MCW), F344/NRrrc (MCW), MR/N (MCW)
20 4333440 4333441 C G snv LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), LEXF4/Stm (2020), FXLE16/Stm (2020), BUF/N (2020), SBH/Ygl (RGD), LN/MavRrrc (RGD), LH/MavRrrc (RGD), LE/Stm (RGD), SBH/Ygl (MCW), M520/N (2020), M520/NRrrcMcwi (2019)
20 4334570 4334571 G A snv WKY/N (MCW), WN/N (MCW), MR/N (MCW), F344/NRrrc (MCW)
20 4340804 4340805 A G snv ACI/N (MCW), Buf/N (MCW), MR/N (MCW), M520/N (MCW)
20 4341254 4341255 G A snv MR/N (MCW)
20 4341256 4341257 C T snv MHS/Gib (RGD), WAG/RijCrl (2020), FHL/EurMcwi (MCW), SBN/Ygl (MCW), BBDP/Wor (RGD), FHL/EurMcwi (RGD), MNS/Gib (RGD), SBN/Ygl (RGD), WAG/Rij (RGD), MWF/Hsd (2019)
20 4348215 4348216 C T snv ACI/N (MCW)
20 4349126 4349127 G T snv SS/JrHsdMcwi (2019), LL/MavRrrcAek (2020), SR/JrHsd (MCW), LEW/Crl (RGD), SR/JrHsd (RGD), SS/Jr (RGD), LEW/Crl (2019), SR/JrHsd (2020), WN/N (2020), WKY/N (2020), CDR, CDS, FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SS/JrHsdMcwi (MCW), F344/NCrl (RGD), FHH/EurMcwi (RGD), LEW/NCrlBR (RGD), LL/MavRrrc (RGD), SS/JrHsdMcwi (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), WKY/NCrl (2019)
20 4350024 4350025 G A snv M520/N (MCW), MR/N (MCW), ACI/N (MCW)
20 4351962 4351963 A C snv Buf/N (MCW), M520/N (MCW), MR/N (MCW), ACI/N (MCW)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 6412796 6412797 C G snv SBH/Ygl (MCW), LH/MavRrrc (KNAW), LN/MavRrrc (KNAW), BUF/N (KNAW), LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), M520/N (KNAW), SBH/Ygl (KNAW)
20 6417383 6417384 G C snv DOB/Oda (KyushuU)
20 6420612 6420613 C T snv LE/OrlBarth (UDEL), Crl:SD (UDEL), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), LEC/Tj (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), SDLEF7/Barth (UDEL), SBN/Ygl (KNAW), MNS/Gib (KNAW), FHL/EurMcwi (KNAW), BBDP/WorN (KNAW), WAG/Rij (KNAW), MR/N (KNAW), MHS/Gib (KNAW), FHL/EurMcwi (MCW), SBN/Ygl (MCW)
20 6428482 6428483 G T snv F344/NRrrc (SOLiD) (KNAW), SS/JrHsdMcwi (KNAW), F344/NHsd (KNAW), FHH/EurMcwi (KNAW), LEW/Crl (KNAW), LEW/NCrl (KNAW), F344/NRrrc (Illumina) (KNAW), WKY/Gcrc (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), F344/NSlc (KyushuU), F344/Stm (KyushuU), ZFDM (KyushuU), SS/Jr (KNAW), SR/JrHsd (KNAW), LL/MavRrrc (KNAW), WN/N (KNAW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), GH/OmrMcwi (MCW), FHH/EurMcwi (MCW), F344/NCrl (KNAW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 4104637 4104638 G A snv HCR/1Mco (UMich), SS/JrHsdMcwi (MDC), FHH/EurMcwi (MDC), LCR/1Mco (UMich)
20 4105172 4105173 C T snv SR/JrHsd (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 4004245 4004246 G A snv WKY/N (2020), WN/N (2020), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SR/JrHsd (2020), MWF/Hsd (2019), LL/MavRrrcAek (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), LEW/Crl (2019), FXLE18/Stm (2020), FHH/EurMcwi (2019), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), WKY/NCrl (2019)
20 4004421 4004422 G A snv WAG/RijCrl (2020), WKY/N (2020), SS/JrHsdMcwi (2019), SR/JrHsd (2020), MWF/Hsd (2019), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LE/Stm (2019), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEW/Crl (2019), FXLE18/Stm (2020), FHH/EurMcwi (2019), F344/N (2020), F344/DuCrl (2019), BUF/N (2020), ACI/EurMcwi (2019), ACI/N (2020)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359601 AgrOrtholog
BioCyc Gene G2FUF-4598 BioCyc
Ensembl Genes ENSRNOG00000048929 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000076734 ENTREZGENE
  ENSRNOP00000076734.1 UniProtKB/TrEMBL
  ENSRNOP00000093475.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072446 ENTREZGENE
  ENSRNOT00000072446.4 UniProtKB/TrEMBL
  ENSRNOT00000107384.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6921289 IMAGE-MGC_LOAD
InterPro Ser/Thr_kinase_19 UniProtKB/TrEMBL
KEGG Report rno:361800 UniProtKB/TrEMBL
MGC_CLONE MGC:72963 IMAGE-MGC_LOAD
NCBI Gene 361800 ENTREZGENE
PANTHER PTHR15243 UniProtKB/TrEMBL
Pfam Stk19 UniProtKB/TrEMBL
PhenoGen Stk19 PhenoGen
UniProt A0A8I5ZJ96_RAT UniProtKB/TrEMBL
  A0A8I6AJX3_RAT UniProtKB/TrEMBL
  Q6MG78_RAT UniProtKB/TrEMBL
  Q6P7Q3 ENTREZGENE, UniProtKB/TrEMBL
  Q8R401_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Stk19  serine/threonine kinase 19      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Stk19  serine/threonine kinase 19      Symbol and Name status set to provisional 70820 PROVISIONAL