Slc26a8 (solute carrier family 26 member 8) - Rat Genome Database
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Gene: Slc26a8 (solute carrier family 26 member 8) Rattus norvegicus
Analyze
Symbol: Slc26a8
Name: solute carrier family 26 member 8
RGD ID: 1308898
Description: Predicted to have chloride channel activity; oxalate transmembrane transporter activity; and sulfate transmembrane transporter activity. Predicted to be involved in chloride transport; oxalate transport; and sulfate transport. Predicted to localize to plasma membrane. Human ortholog(s) of this gene implicated in spermatogenic failure 3. Orthologous to human SLC26A8 (solute carrier family 26 member 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC309646; solute carrier family 26 (anion exchanger), member 8; solute carrier family 26, member 8; testis anion transporter 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2206,686,206 - 6,749,478 (-)NCBI
Rnor_6.0 Ensembl205,881,462 - 5,931,648 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0205,870,714 - 5,933,151 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0207,916,755 - 7,967,148 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,898,665 - 6,937,594 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1206,886,712 - 6,939,187 (-)NCBI
Celera208,242,917 - 8,305,701 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1183472   PMID:8889548   PMID:11278976   PMID:11834742   PMID:12477932  


Genomics

Comparative Map Data
Slc26a8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2206,686,206 - 6,749,478 (-)NCBI
Rnor_6.0 Ensembl205,881,462 - 5,931,648 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0205,870,714 - 5,933,151 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0207,916,755 - 7,967,148 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,898,665 - 6,937,594 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1206,886,712 - 6,939,187 (-)NCBI
Celera208,242,917 - 8,305,701 (-)NCBICelera
Cytogenetic Map20p12NCBI
SLC26A8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl635,943,516 - 36,024,868 (-)EnsemblGRCh38hg38GRCh38
GRCh38635,943,516 - 36,024,641 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37635,911,293 - 35,992,418 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,019,271 - 36,100,355 (-)NCBINCBI36hg18NCBI36
Build 34636,019,275 - 36,100,248NCBI
Celera637,465,857 - 37,546,973 (-)NCBI
Cytogenetic Map6p21.31NCBI
HuRef635,631,132 - 35,712,425 (-)NCBIHuRef
CHM1_1635,913,031 - 35,994,194 (-)NCBICHM1_1
Slc26a8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,856,753 - 28,910,242 (-)NCBIGRCm39mm39
GRCm39 Ensembl1728,856,757 - 28,909,207 (-)Ensembl
GRCm381728,637,779 - 28,691,273 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,637,783 - 28,690,233 (-)EnsemblGRCm38mm10GRCm38
MGSCv371728,773,937 - 28,826,932 (-)NCBIGRCm37mm9NCBIm37
MGSCv361728,377,246 - 28,417,576 (-)NCBImm8
Celera1729,192,614 - 29,244,985 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.82NCBI
Slc26a8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554373,741,284 - 3,811,819 (-)NCBIChiLan1.0ChiLan1.0
SLC26A8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1636,705,860 - 36,785,610 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl636,705,860 - 36,785,610 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0635,502,875 - 35,584,146 (-)NCBIMhudiblu_PPA_v0panPan3
SLC26A8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl125,060,306 - 5,135,677 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1125,059,267 - 5,145,387 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Slc26a8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647623,311,740 - 23,380,119 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC26A8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl731,722,990 - 31,792,904 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1731,722,409 - 31,791,620 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2736,660,015 - 36,725,721 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC26A8
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11736,097,458 - 36,175,638 (+)NCBI
ChlSab1.1 Ensembl1736,103,139 - 36,175,459 (+)Ensembl
Slc26a8
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475421,607,197 - 21,667,484 (+)NCBI

Position Markers
BE119515  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map2077.94UniSTS
Cytogenetic Map20p12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124652101Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125653396Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20126305996Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20126305996Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20127357423Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20128375393Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20128375393Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20128375393Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20128375393Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20128375393Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20133300419Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20137550487Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20137550487Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20201865447018654Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2020187706567419Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20299970747999707Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2031518156896013Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2031518156896013Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20340211127968216Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2040391135875448Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20403911318872273Rat
4889857Pur27Proteinuria QTL 2712.20.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20403911318872273Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)20410895649108956Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2048554689899946Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RChigh CD8 T cell count to CD45RClow CD8 T cell count ratio (CMO:0001990)20485546810800530Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20485547515050565Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20587544818739210Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:33
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000059264
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 22 22 22 9 12
Low 3 43 35 19 19 19 7 10 65 35 29 11 7
Below cutoff 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC166448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA503886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000059264   ⟹   ENSRNOP00000056031
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,881,676 - 5,927,070 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092383   ⟹   ENSRNOP00000075921
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,881,462 - 5,931,417 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092568
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,894,128 - 5,931,648 (-)Ensembl
RefSeq Acc Id: NM_001107614   ⟹   NP_001101084
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,697,721 - 6,749,478 (-)NCBI
RefSeq Acc Id: XM_003751933   ⟹   XP_003751981
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,881,456 - 5,933,151 (-)NCBI
Rnor_5.0207,916,755 - 7,967,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003753467   ⟹   XP_003753515
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera208,253,640 - 8,305,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006223814   ⟹   XP_006223876
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera208,253,640 - 8,305,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256144   ⟹   XP_006256206
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,881,456 - 5,933,151 (-)NCBI
Rnor_5.0207,916,755 - 7,967,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772779   ⟹   XP_008771001
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,880,599 - 5,933,151 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772780   ⟹   XP_008771002
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,697,721 - 6,749,222 (-)NCBI
Rnor_6.0205,881,456 - 5,933,151 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772781   ⟹   XP_008771003
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,881,456 - 5,933,151 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774914   ⟹   XP_008773136
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera208,252,762 - 8,305,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774915   ⟹   XP_008773137
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera208,253,640 - 8,305,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774916   ⟹   XP_008773138
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera208,253,640 - 8,305,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017588035   ⟹   XP_017443524
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera208,253,640 - 8,305,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017588036   ⟹   XP_017443525
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera208,253,640 - 8,305,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601863   ⟹   XP_017457352
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,881,456 - 5,933,151 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601864   ⟹   XP_017457353
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,881,456 - 5,933,151 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098693   ⟹   XP_038954621
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,697,721 - 6,749,222 (-)NCBI
RefSeq Acc Id: XM_039098694   ⟹   XP_038954622
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,697,119 - 6,749,222 (-)NCBI
RefSeq Acc Id: XM_039098695   ⟹   XP_038954623
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,697,721 - 6,749,222 (-)NCBI
RefSeq Acc Id: XM_039098696   ⟹   XP_038954624
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,697,721 - 6,749,222 (-)NCBI
RefSeq Acc Id: XM_039098697   ⟹   XP_038954625
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,697,721 - 6,749,222 (-)NCBI
RefSeq Acc Id: XM_039098698   ⟹   XP_038954626
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,697,721 - 6,749,222 (-)NCBI
RefSeq Acc Id: XM_039098699   ⟹   XP_038954627
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,697,721 - 6,749,222 (-)NCBI
RefSeq Acc Id: XM_039098700   ⟹   XP_038954628
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,697,721 - 6,749,222 (-)NCBI
RefSeq Acc Id: XM_039098701   ⟹   XP_038954629
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,709,558 - 6,749,222 (-)NCBI
RefSeq Acc Id: XM_039098702   ⟹   XP_038954630
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,709,558 - 6,749,222 (-)NCBI
RefSeq Acc Id: XR_005497239
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,686,206 - 6,749,222 (-)NCBI
RefSeq Acc Id: XR_005497241
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,697,721 - 6,749,222 (-)NCBI
RefSeq Acc Id: XR_005497242
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2206,708,152 - 6,749,222 (-)NCBI
RefSeq Acc Id: XR_597345
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,870,714 - 5,933,151 (-)NCBI
Sequence:
RefSeq Acc Id: XR_599373
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera208,242,917 - 8,305,701 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_003751981   ⟸   XM_003751933
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_003753515   ⟸   XM_003753467
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006223876   ⟸   XM_006223814
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006256206   ⟸   XM_006256144
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008773136   ⟸   XM_008774914
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008773137   ⟸   XM_008774915
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008773138   ⟸   XM_008774916
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008771001   ⟸   XM_008772779
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008771002   ⟸   XM_008772780
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008771003   ⟸   XM_008772781
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017443525   ⟸   XM_017588036
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017443524   ⟸   XM_017588035
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017457353   ⟸   XM_017601864
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017457352   ⟸   XM_017601863
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000075921   ⟸   ENSRNOT00000092383
RefSeq Acc Id: ENSRNOP00000056031   ⟸   ENSRNOT00000059264
RefSeq Acc Id: XP_038954622   ⟸   XM_039098694
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001101084   ⟸   NM_001107614
RefSeq Acc Id: XP_038954621   ⟸   XM_039098693
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954628   ⟸   XM_039098700
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038954626   ⟸   XM_039098698
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038954624   ⟸   XM_039098696
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038954627   ⟸   XM_039098699
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038954625   ⟸   XM_039098697
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038954623   ⟸   XM_039098695
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038954630   ⟸   XM_039098702
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038954629   ⟸   XM_039098701
- Peptide Label: isoform X9
Protein Domains
STAS

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701437
Promoter ID:EPDNEW_R11956
Type:initiation region
Name:Slc26a8_1
Description:solute carrier family 26 member 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,931,435 - 5,931,495EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 7925576 7925577 C A snv NIG-III/Hok (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308898 AgrOrtholog
Ensembl Genes ENSRNOG00000000512 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000056031 UniProtKB/TrEMBL
  ENSRNOP00000075921 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059264 UniProtKB/TrEMBL
  ENSRNOT00000092383 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8366708 IMAGE-MGC_LOAD
InterPro SLC26A8 UniProtKB/TrEMBL
  STAS_dom UniProtKB/TrEMBL
  STAS_dom_sf UniProtKB/TrEMBL
  Sul_anion_transpt UniProtKB/TrEMBL
  Sulph_transpt UniProtKB/TrEMBL
KEGG Report rno:309646 UniProtKB/TrEMBL
MGC_CLONE MGC:187615 IMAGE-MGC_LOAD
NCBI Gene 309646 ENTREZGENE
PANTHER PTHR11814 UniProtKB/TrEMBL
  PTHR11814:SF11 UniProtKB/TrEMBL
Pfam STAS UniProtKB/TrEMBL
  Sulfate_transp UniProtKB/TrEMBL
PhenoGen Slc26a8 PhenoGen
PROSITE STAS UniProtKB/TrEMBL
Superfamily-SCOP STAS UniProtKB/TrEMBL
UniProt B2GUX9_RAT UniProtKB/TrEMBL
  F7F9X9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc26a8  solute carrier family 26 member 8  Slc26a8  solute carrier family 26 (anion exchanger), member 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc26a8  solute carrier family 26 (anion exchanger), member 8  Slc26a8  solute carrier family 26, member 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Slc26a8  solute carrier family 26, member 8   Slc26a8_predicted  solute carrier family 26, member 8 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Slc26a8_predicted  solute carrier family 26, member 8 (predicted)      Symbol and Name status set to approved 70820 APPROVED