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Gene: Rab36 (RAB36, member RAS oncogene family) Rattus norvegicus

Analyze

Symbol:

Rab36

Name:

RAB36, member RAS oncogene family

RGD ID:

1596098

Description:

Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in vesicle-mediated transport. Orthologous to human RAB36 (RAB36, member RAS oncogene family); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC690407; ras-related protein Rab-36; similar to RAB36, member RAS oncogene family

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAB36 (RAB36, member RAS oncogene family)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rab36 (RAB36, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rab36 (RAB36, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAB36 (RAB36, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAB36 (RAB36, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rab36 (RAB36, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAB36 (RAB36, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAB36 (RAB36, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rab36 (RAB36, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RAB36 (RAB36, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rab36 (RAB36, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rab36 (RAB36, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RabX5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rab36	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	13,606,086 - 13,624,208 (-)	NCBI		GRCr8
mRatBN7.2	20	13,606,700 - 13,624,304 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	13,608,136 - 13,624,170 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	14,314,630 - 14,330,407 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	13,675,463 - 13,691,240 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	14,148,058 - 14,163,835 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	14,557,485 - 14,573,939 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	14,557,740 - 14,573,519 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	16,740,064 - 16,755,978 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	14,111,728 - 14,127,278 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	15,091,251 - 15,107,052 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 22q11.2 deletion syndrome, distal (ISO)

DiGeorge syndrome (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

butanal (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

copper atom (EXP)

copper(0) (EXP)

DDE (ISO)

diquat (ISO)

ethanol (ISO)

fipronil (EXP)

folic acid (ISO)

fonofos (ISO)

gentamycin (EXP)

iron dichloride (ISO)

methapyrilene (ISO)

paracetamol (ISO)

parathion (ISO)

PCB138 (EXP)

perfluorooctane-1-sulfonic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

resveratrol (ISO)

rotenone (ISO)

sodium arsenite (ISO)

terbufos (ISO)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

vesicle-mediated transport (IBA)

Molecular Function

GTP binding (IBA)

GTPase activity (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Rab36
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	13,606,086 - 13,624,208 (-)	NCBI		GRCr8
mRatBN7.2	20	13,606,700 - 13,624,304 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	13,608,136 - 13,624,170 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	14,314,630 - 14,330,407 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	13,675,463 - 13,691,240 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	14,148,058 - 14,163,835 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	14,557,485 - 14,573,939 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	14,557,740 - 14,573,519 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	16,740,064 - 16,755,978 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	14,111,728 - 14,127,278 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	15,091,251 - 15,107,052 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

RAB36
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	23,145,324 - 23,169,280 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	23,145,366 - 23,165,663 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	23,487,511 - 23,507,850 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	21,817,513 - 21,836,531 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	21,812,066 - 21,831,085	NCBI
Celera	22	7,302,063 - 7,321,070 (+)	NCBI		Celera
Cytogenetic Map	22	q11.23	NCBI
HuRef	22	6,455,237 - 6,474,245 (+)	NCBI		HuRef
CHM1_1	22	23,499,786 - 23,518,792 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	23,568,177 - 23,592,144 (+)	NCBI		T2T-CHM13v2.0

Rab36
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	74,872,727 - 74,890,580 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	74,872,890 - 74,890,580 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	75,036,895 - 75,054,748 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	75,037,058 - 75,054,748 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	74,499,834 - 74,516,845 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	74,480,805 - 74,497,816 (+)	NCBI		MGSCv36	mm8
Celera	10	76,084,913 - 76,101,889 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	38.49	NCBI

Rab36
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	7,575,875 - 7,587,972 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	7,574,376 - 7,590,024 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAB36
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	32,976,440 - 33,003,010 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	35,085,772 - 35,106,142 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	22	21,768,203 - 21,785,755 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	21,768,203 - 21,785,755 (+)	Ensembl	panpan1.1		panPan2

RAB36
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	27,831,256 - 27,845,918 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	27,831,196 - 27,844,670 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	26,906,969 - 26,921,643 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	29,235,182 - 29,249,889 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	29,235,189 - 29,245,936 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	27,318,531 - 27,333,235 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	26,936,027 - 26,950,729 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	27,925,302 - 27,940,012 (+)	NCBI		UU_Cfam_GSD_1.0

Rab36
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	142,475,251 - 142,491,662 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	264,252 - 276,529 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936619	262,356 - 278,682 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB36
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	49,188,360 - 49,204,656 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	49,186,282 - 49,202,334 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	52,612,204 - 52,625,420 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB36
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	2,720,771 - 2,737,989 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	2,718,883 - 2,737,602 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666085	4,389,296 - 4,405,578 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rab36
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	9,506,138 - 9,519,176 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	9,504,525 - 9,521,315 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	284
Count of miRNA genes:	163
Interacting mature miRNAs:	187
Transcripts:	ENSRNOT00000001772
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24164241	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8043920	15089182	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1	14100378	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Markers in Region

RH138065

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	13,621,350 - 13,621,523 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	14,570,960 - 14,571,132	NCBI	Rnor6.0
Rnor_5.0	20	16,752,997 - 16,753,169	UniSTS	Rnor5.0
RGSC_v3.4	20	14,124,719 - 14,124,891	UniSTS	RGSC3.4
Celera	20	15,104,493 - 15,104,665	UniSTS
Cytogenetic Map	20	p12	UniSTS

AU049161

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	13,624,960 - 13,625,093 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	14,574,570 - 14,574,700	NCBI	Rnor6.0
Rnor_5.0	20	16,756,607 - 16,756,737	UniSTS	Rnor5.0
RGSC_v3.4	20	14,128,329 - 14,128,459	UniSTS	RGSC3.4
Celera	20	15,108,103 - 15,108,233	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	10	49	113	85	84	53	23	53	6	209	95	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010060757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC167029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001772 ⟹ ENSRNOP00000001772

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	13,608,136 - 13,619,185 (-)	Ensembl
Rnor_6.0 Ensembl	20	14,557,740 - 14,573,519 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095296 ⟹ ENSRNOP00000078135

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	13,608,136 - 13,624,170 (-)	Ensembl

RefSeq Acc Id:

NM_001109589 ⟹ NP_001103059

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,606,086 - 13,623,513 (-)	NCBI
mRatBN7.2	20	13,606,700 - 13,624,128 (-)	NCBI
Rnor_6.0	20	14,557,739 - 14,573,519 (-)	NCBI
Rnor_5.0	20	16,740,064 - 16,755,978 (-)	NCBI
RGSC_v3.4	20	14,111,728 - 14,127,278 (-)	RGD
Celera	20	15,091,251 - 15,107,052 (-)	RGD

Sequence:

show sequence

GGTGATTTGCAGCGGCCTGCGCGCCAGAACCTGGTCTTTGCAGCTTTGAACACTGGAAGAATGA
GGTCCTCTTGGACCCCTCTGGGGCCCCCTGTGAGCCAGGATCGAATCATCACCAGCTTCCCTAA
GTGGTACACGCCGGATGCCTGCCTGCAGCTCAAGGAGCACTTCCACAGCCAGGTCAGCACAGCC
TGCCAGCACAGGAACACGGGCACTGCTGGGCTCAGACTCTCCAAGGTGGTGGTAGTTGGTGATC
TCTACGTGGGAAAGACTAGCCTCATTCACAGGTTATGCAAGAATGTTTTCGACCGGGATTACAA
GGCCACGATTGGTGTAGACTTTGAAATCGAGCGCTTTGAGATCGCAGGGATTCCCTACAGCCTC
CAGATCTGGGACACAGCCGGACAGGAAAAGTTCAAGTGCATTGCGTCTGCCTACTACCGCGGTG
CCCAGGTGATCATCACAGCCTTTGACCTCACCGACGTGCAGACTCTGGAGCATACCAAGCAGTG
GCTGCAGGATGTGCTGAGGGAGAATGAGGCAGGTTCTTGCTTCATCTTCCTCGTGGGAACCAAG
AAGGATCTCCTGTCAGGGGCAGCGTGCGAGCAGGCGGAAGCAGAAGCTGTGCATCTGGCCAATG
AGATGCAGGCAGAGTACTGGTCTGTGTCGGCCAAGACGGGAGAGAACGTGAAGGCATTCTTCAG
CCGAGTCGCCGCCCTAGCCTTTGAACAGTCTGTACTTCAGGACCTAGAGAAGAGGCCCAGCACC
CAGTCCCAGGTCGGAGATGGAGATGGAGACCTAATACGAATAGAGGTACCGAAGACGCAGGAGA
ACAAAAGGCCACCTGGCCTGGGTTGCTGTTAACTGAGGCCAGCATCAGAGCCATCACAGGGTGT
GACATAGAGCCCAAGCTCTTCAGTGGACATGCCTTAAAGCTGGAGAAGCCCTGTGTCTCCAGAG
CCCAGCCATTTCTCTTTAGCCGGTCAGCAGCCACTGGCTGCTGAAACCCCATACTGCCTGGCTG
GTTGATGGGCACCAGGGTGAGCCTTCTCTTTAGGGTCTTCAGACTGTCACCGTGTTCTTAAGAG
GCTCCAAGACTGCGAACTCGGGGCACCTCGGGCTAGCCCACGTCCCTTACCCAATTATACCAAT
AACTGTGGGGCCCTTTCGTGTGGATCCTCTGGGATCTCCATGTTCCAAGCACGGAGACTTGTCA
GAGTGGGCAAGTAAAATTAACCTGCCATCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001415699 ⟹ NP_001402628

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,606,086 - 13,623,513 (-)	NCBI
mRatBN7.2	20	13,606,700 - 13,624,128 (-)	NCBI

RefSeq Acc Id:

XM_063279528 ⟹ XP_063135598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,606,086 - 13,624,208 (-)	NCBI

RefSeq Acc Id:

XM_063279529 ⟹ XP_063135599

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,606,086 - 13,623,378 (-)	NCBI

RefSeq Acc Id:

XR_010060757

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,609,402 - 13,624,208 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001103059	(Get FASTA)	NCBI Sequence Viewer
	NP_001402628	(Get FASTA)	NCBI Sequence Viewer
	XP_063135598	(Get FASTA)	NCBI Sequence Viewer
	XP_063135599	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI67029	(Get FASTA)	NCBI Sequence Viewer
	EDL97234	(Get FASTA)	NCBI Sequence Viewer
	EDL97235	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001772.6
	ENSRNOP00000078135.1

RefSeq Acc Id:

NP_001103059 ⟸ NM_001109589

- UniProtKB:

B2RZ53 (UniProtKB/TrEMBL), F7F2S0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRSSWTPLGPPVSQDRIITSFPKWYTPDACLQLKEHFHSQVSTACQHRNTGTAGLRLSKVVVVG
DLYVGKTSLIHRLCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYR
GAQVIITAFDLTDVQTLEHTKQWLQDVLRENEAGSCFIFLVGTKKDLLSGAACEQAEAEAVHLA
NEMQAEYWSVSAKTGENVKAFFSRVAALAFEQSVLQDLEKRPSTQSQVGDGDGDLIRIEVPKTQ
ENKRPPGLGCC

hide sequence

Ensembl Acc Id:

ENSRNOP00000001772 ⟸ ENSRNOT00000001772

Ensembl Acc Id:

ENSRNOP00000078135 ⟸ ENSRNOT00000095296

RefSeq Acc Id:	NP_001402628 ⟸ NM_001415699
- UniProtKB:	F7F2S0 (UniProtKB/TrEMBL), B2RZ53 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135598 ⟸ XM_063279528
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5YC69 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135599 ⟸ XM_063279529
- Peptide Label:	isoform X2
- UniProtKB:	F7F2S0 (UniProtKB/TrEMBL), B2RZ53 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RZ53-F1-model_v2	AlphaFold	B2RZ53	1-267	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701545

Promoter ID:

EPDNEW_R12069

Type:

single initiation site

Name:

Rab36_1

Description:

RAB36, member RAS oncogene family

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	14,573,527 - 14,573,587	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1596098	AgrOrtholog
BioCyc Gene	G2FUF-4102	BioCyc
Ensembl Genes	ENSRNOG00000001311	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001772.7	UniProtKB/TrEMBL
	ENSRNOT00000095296.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8368465	IMAGE-MGC_LOAD
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Rab	UniProtKB/TrEMBL
	Ras_GTPase	UniProtKB/TrEMBL
	Small_GTP_bd	UniProtKB/TrEMBL
KEGG Report	rno:690407	UniProtKB/TrEMBL
MGC_CLONE	MGC:189269	IMAGE-MGC_LOAD
NCBI Gene	690407	ENTREZGENE
PANTHER	RAS-RELATED PROTEIN RAB	UniProtKB/TrEMBL
	RAS-RELATED PROTEIN RAB-36	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PhenoGen	Rab36	PhenoGen
PRINTS	RASTRNSFRMNG	UniProtKB/TrEMBL
PROSITE	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001311	RatGTEx
SMART	RAB	UniProtKB/TrEMBL
	RAN	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I5YC69	ENTREZGENE, UniProtKB/TrEMBL
	B2RZ53	ENTREZGENE, UniProtKB/TrEMBL
	F7F2S0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Rab36	RAB36, member RAS oncogene family	LOC690407	similar to RAB36, member RAS oncogene family	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC690407	similar to RAB36, member RAS oncogene family			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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