Snora38 (small nucleolar RNA, H/ACA box 38) - Rat Genome Database

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Gene: Snora38 (small nucleolar RNA, H/ACA box 38) Rattus norvegicus
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Symbol: Snora38
Name: small nucleolar RNA, H/ACA box 38
RGD ID: 41318103
Description: INTERACTS WITH 2-hydroxypropanoic acid (ortholog); benzalkonium chloride (ortholog); benzo[a]pyrene (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: AC094348.5; Gm23442; LOC120099072; predicted gene, 23442; small nucleolar RNA SNORA38
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,077,872 - 22,077,996 (+)NCBIGRCr8
mRatBN7.2203,660,900 - 3,661,033 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,660,900 - 3,661,033 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl914,580,285 - 14,580,409 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl205,152,987 - 5,153,120 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snora38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,077,872 - 22,077,996 (+)NCBIGRCr8
mRatBN7.2203,660,900 - 3,661,033 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,660,900 - 3,661,033 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl914,580,285 - 14,580,409 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl205,152,987 - 5,153,120 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20p12NCBI
SNORA38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,623,079 - 31,623,210 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,623,079 - 31,623,210 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,590,856 - 31,590,987 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,698,835 - 31,698,966 (+)NCBINCBI36Build 36hg18NCBI36
Celera633,189,079 - 33,189,210 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,377,028 - 31,377,159 (+)NCBIHuRef
CHM1_1631,592,992 - 31,593,123 (+)NCBICHM1_1
T2T-CHM13v2.0631,476,127 - 31,476,258 (+)NCBIT2T-CHM13v2.0
Gm23442
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,381,539 - 35,381,672 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,381,539 - 35,381,672 (-)EnsemblGRCm39 Ensembl
GRCm381735,162,563 - 35,162,696 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,162,563 - 35,162,696 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17B1NCBI


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)9131250552Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9141763315Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9671488829567695Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)92103143049025574Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005489586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000083081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,660,900 - 3,661,033 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,580,285 - 14,580,409 (+)Ensembl
RefSeq Acc Id: XR_005489586
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8922,077,872 - 22,077,996 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-4651 BioCyc
Ensembl Genes ENSRNOG00000054091 Ensembl
  ENSRNOG00000056839 Ensembl
NCBI Gene LOC120099072 ENTREZGENE
PhenoGen Snora38 PhenoGen
RatGTEx ENSRNOG00000054091 RatGTEx
  ENSRNOG00000056839 RatGTEx
RNAcentral URS0000637567 RNACentral
  URS0000690A2F RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Snora38  small nucleolar RNA, H/ACA box 38  LOC120099072  small nucleolar RNA SNORA38  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120099072  small nucleolar RNA SNORA38  AC094348.5    Data merged from RGD:15008420 737654 PROVISIONAL
2021-01-27 LOC120099072  small nucleolar RNA SNORA38      Symbol and Name status set to provisional 70820 PROVISIONAL
2020-02-07 AC094348.5    Gm23442  predicted gene, 23442  Symbol and/or name change 19259462 PROVISIONAL