Mcs20 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Mcs20 (Mammary carcinoma susceptibility QTL 20) Rattus norvegicus

Symbol: Mcs20
Name: Mammary carcinoma susceptibility QTL 20
RGD ID: 1600365
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor growth rate   (CMO:0000344)    
LOD Score: 3.0
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2913,533,770 - 42,791,750RGD_MAPPER_PIPELINE
Rnor_6.0915,554,901 - 47,249,201RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0914,477,917 - 46,933,391RGDRnor5.0
RGSC_v3.498,991,206 - 39,691,794RGDRGSC3.4
RGSC_v3.198,988,529 - 39,693,208RGD
Cross Type: backcross
Strains Crossed: WKY/Ztm SPRD/Ztm 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
SPRD/Ztm  (IEA)
WKY/Ztm  (IEA)

References


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1561662RGD1561662similar to AI661453 protein91554546015582567Rat
6485345LOC100912849uncharacterized LOC10091284991558016615604282Rat
1308712Guca1aguanylate cyclase activator 1A91560980415620030Rat
1308191Guca1bguanylate cyclase activator 1B91562108315629017Rat
1311516Mrps10mitochondrial ribosomal protein S1091563742715651154Rat
1307167Trerf1transcriptional regulating factor 191565323015881695Rat
1593237Ubr2ubiquitin protein ligase E3 component n-recognin 291600305816080152Rat
3549Prph2peripherin 291608593316386176Rat
6492882LOC100911489uncharacterized LOC10091148991613706116140650Rat
11441749LOC108351890uncharacterized LOC10835189091633883216339464Rat
1306756Tbcctubulin folding cofactor C91640518716406338Rat
1305680BicralBICRA like chromatin remodeling complex associated protein91640657716495751Rat
1308469Rpl7l1ribosomal protein L7-like 191650847716516502Rat
1596723LOC681367hypothetical protein LOC68136791651837416519474Rat
621388Ptcrapre T-cell antigen receptor alpha91652897016539383Rat
1597709Cnpy3canopy FGF signaling regulator 391654371516558441Rat
2719Gnmtglycine N-methyltransferase91656527416568626Rat
621637Pex6peroxisomal biogenesis factor 691656874316580900Rat
1306666Ppp2r5dprotein phosphatase 2, regulatory subunit B', delta91658099516610425Rat
1597751Mea1male-enhanced antigen 191661031216614153Rat
1307105Klhdc3kelch domain containing 391661242916618761Rat
2321693Rrp36ribosomal RNA processing 3691661885316627128Rat
1587048Cul7cullin 791662949116643527Rat
1307147Mrpl2mitochondrial ribosomal protein L291664362116647394Rat
1306555Klc4kinesin light chain 491664757716661463Rat
1310472Ptk7protein tyrosine kinase 791666258816729888Rat
1559787Srfserum response factor91673763716747226Rat
1562008Cul9cullin 991674744916844033Rat
68440Rps19l2ribosomal protein S19-like291680228016807982Rat
6498788LOC10091033640S ribosomal protein S19-like91680228016808037Rat
620382Dnph12'-deoxynucleoside 5'-phosphate N-hydrolase 191684576416848514Rat
1559518Ttbk1tau tubulin kinase 191686230516899399Rat
621699Slc22a7solute carrier family 22 member 791692532116931119Rat
1565018Crip3cysteine-rich protein 391693186216934714Rat
1583221Zfp318zinc finger protein 31891694781816979131Rat
1306696Abcc10ATP binding cassette subfamily C member 1091704135117061263Rat
1309143Dlk2delta like non-canonical Notch ligand 291706118717065600Rat
1308708Tjap1tight junction associated protein 191708645217110770Rat
1561390Lrrc73leucine rich repeat containing 7391711117617115249Rat
1308185Yipf3Yip1 domain family, member 391711530817120659Rat
1309689Polr1cRNA polymerase I and III subunit C91712075917124871Rat
1311522Xpo5exportin 591712520117163170Rat
1309893PolhDNA polymerase eta91716335417198006Rat
9295718LOC103690509activated RNA polymerase II transcriptional coactivator p15 pseudogene91718715417187865Rat
1306367Gtpbp2GTP binding protein 291719895717208456Rat
2306314Rps2-ps6ribosomal protein S2, pseudogene 691721172017212642Rat
1309175Mad2l1bpMAD2L1 binding protein91721714117221465Rat
1310693Rsph9radial spoke head component 991722458917245093Rat
735229Mrps18amitochondrial ribosomal protein S18A91723835417254845Rat
11382532LOC108351891uncharacterized LOC10835189191732670917332370Rat
619991Vegfavascular endothelial growth factor A91734034117355681Rat
7526556LOC102550162uncharacterized LOC10255016291748826717520119Rat
11456684LOC10835198940S ribosomal protein S29 pseudogene91759330517593570Rat
7671069LOC102550363uncharacterized LOC10255036391762375917645063Rat
9095701LOC103690501uncharacterized LOC10369050191766355517667261Rat
1306240Mrpl14mitochondrial ribosomal protein L1491768762217698591Rat
1305862Tmem63btransmembrane protein 63B91769869717725479Rat
1302946Capn11calpain 1191772884517750357Rat
11426996Mymxmyomixer, myoblast fusion factor91778139717783074Rat
61899Slc29a1solute carrier family 29 member 191778446817799008Rat
1303075Hsp90ab1heat shock protein 90 alpha family class B member 191781779117823163Rat
1565318Slc35b2solute carrier family 35 member B291782339917827032Rat
735070NfkbieNFKB inhibitor epsilon91782840517835240Rat
1562074Tmem151btransmembrane protein 151B91784141017846535Rat
1305744Tcte1t-complex-associated testis expressed 191784786617867276Rat
1310617Aars2alanyl-tRNA synthetase 2, mitochondrial91786930117881762Rat
11376343LOC108351892uncharacterized LOC10835189291787116417873333Rat
631367Spats1spermatogenesis associated, serine-rich 191791195017947101Rat
9287229LOC103690502Friend virus susceptibility protein 1-like91794002617949470Rat
70892Cdc5lcell division cycle 5-like91794976417988514Rat
9470607LOC103693206uncharacterized LOC10369320691795735917959842Rat
11470506LOC108351893uncharacterized LOC10835189391798834117993346Rat
7624959LOC102551267paired box protein Pax-7-like91800102118001631Rat
11428296LOC108351990uncharacterized LOC10835199091804815618099787Rat
7746747LOC102551517uncharacterized LOC10255151791820682018212009Rat
1596995LOC503243similar to CG8435-PA91821493918216696Rat
1591316Supt3hSPT3 homolog, SAGA and STAGA complex component91824956518604814Rat
9113792LOC103693207uncharacterized LOC10369320791848866018489106Rat
1590246Znrd1aszinc ribbon domain containing 1 antisense91848928418490450Rat
2282Runx2RUNX family transcription factor 291856474318773092Rat
9231519LOC103690503uncharacterized LOC10369050391881841718820965Rat
11432264LOC108351894uncharacterized LOC10835189491910034019110408Rat
620659Clic5chloride intracellular channel 591912167619372673Rat
11477544LOC108351895uncharacterized LOC10835189591938062419386356Rat
7587989LOC102555783uncharacterized LOC10255578391943632319440559Rat
1308689Enpp4ectonucleotide pyrophosphatase/phosphodiesterase 491944680719457946Rat
1359199Enpp5ectonucleotide pyrophosphatase/phosphodiesterase family member 591946927619476684Rat
69198Rcan2regulator of calcineurin 291951856819749145Rat
1307471Cyp39a1cytochrome P450, family 39, subfamily a, polypeptide 191980407919880346Rat
620787Slc25a27solute carrier family 25, member 2791988046819907506Rat
11380309LOC108351896uncharacterized LOC10835189691991294819916826Rat
1305956Tdrd6tudor domain containing 691991761319932888Rat
1310734Pla2g7phospholipase A2 group VII91993575419978013Rat
1560151Ankrd66ankyrin repeat domain 6691997722920014747Rat
3080Mep1ameprin A subunit alpha92004816320077678Rat
621679Adgrf5adhesion G protein-coupled receptor F592009112120195706Rat
7594196LOC102549865uncharacterized LOC10254986592027034120271138Rat
1310285Adgrf1adhesion G protein-coupled receptor F192034373020378686Rat
9348743LOC103690250uncharacterized LOC10369025092041816620444418Rat
11412450LOC108351897ATP synthase subunit g, mitochondrial pseudogene92042485520428516Rat
7681836LOC102550299ATP synthase subunit g, mitochondrial-like92042711020428481Rat
11520739LOC108351898uncharacterized LOC10835189892052585320537686Rat
1307308Tnfrsf21TNF receptor superfamily member 2192054615920621051Rat
11503016LOC108351899uncharacterized LOC10835189992072371120730180Rat
727803Cd2apCD2-associated protein92079468020858438Rat
1306718Adgrf2adhesion G protein-coupled receptor F292089894320948284Rat
1565216Adgrf4adhesion G protein-coupled receptor F492095124920982493Rat
727869Opn5opsin 592104545721092517Rat
1563020Ptchd4patched domain containing 492113715021339398Rat
7567944LOC102551364uncharacterized LOC10255136492146204921498590Rat
11477895LOC108352019uncharacterized LOC10835201992182755521831440Rat
1333298Olr1828-psolfactory receptor pseudogene 182892190111721901594Rat
11432436LOC10835199160S ribosomal protein L21 pseudogene92286156122862066Rat
9318008LOC103690513G-protein coupled receptor 39-like92308503423103800Rat
7609462LOC102548131uncharacterized LOC10254813192321906623233529Rat
7527318LOC102548541uncharacterized LOC10254854192329819723330156Rat
1587662Mmutmethylmalonyl-CoA mutase92332393423352144Rat
1359451Cenpqcentromere protein Q92335227123368774Rat
7676281LOC10255358140S ribosomal protein S12-like92336271723363832Rat
1587643Glyatl3glycine-N-acyltransferase-like 392337261423390764Rat
7735571LOC102548627non-histone chromosomal protein HMG-14-like92337657423377220Rat
1588829LOC688459hypothetical protein LOC68845992342065423424832Rat
1564244Cyp2ac1cytochrome P450, family 2, subfamily ac, polypeptide 192343156123444219Rat
61871RhagRh-associated glycoprotein92346519023493081Rat
621653Crisp2cysteine-rich secretory protein 292350322323527502Rat
9450374LOC103690514exocrine gland-secreted peptide 1-like92354068523545722Rat
7503936LOC102553880uncharacterized LOC10255388092355934423563421Rat
11390506LOC10835199360S ribosomal protein L36a-like92357156723584479Rat
11433453LOC108351994exocrine gland-secreted peptide 1-like92359696423601370Rat
7504294LOC102553506uncharacterized LOC10255350692371413923721787Rat
1586485LOC688615similar to ubiquinol-cytochrome c reductase binding protein92396869223969183Rat
619846Crisp3cysteine-rich secretory protein 392404740524088066Rat
1306627Pgk2phosphoglycerate kinase 292409577424097340Rat
7615067LOC102548813uncharacterized LOC10254881392415944024166762Rat
7578564LOC102557398polyubiquitin 12-like92427223924272455Rat
11397802LOC108351900uncharacterized LOC10835190092427786624284992Rat
1590757Crisp1cysteine-rich secretory protein 192435657724383679Rat
1560245Defb49defensin beta 4992444511524451499Rat
1559758Defb18defensin beta 1892446698124467892Rat
1562466Defb16-psdefensin beta 16 pseudogene92450115124509680Rat
1565718Defb17defensin beta 1792450624624509761Rat
7726690LOC10255520960S ribosomal protein L27a-like92485318624910701Rat
1585305LOC688701similar to heterogeneous nuclear ribonucleoproteins methyltransferase-like 292493828424939476Rat
9222779LOC103690504ubiquitin-conjugating enzyme E2 N-like92499570324996086Rat
11442088LOC108351995glyceraldehyde-3-phosphate dehydrogenase-like92512752225203926Rat
1304864Tfap2dtranscription factor AP-2 delta92530487625365151Rat
1306321Tfap2btranscription factor AP-2 beta92541066925440568Rat
11378807LOC108351901uncharacterized LOC10835190192542118325424353Rat
9108912LOC103690505uncharacterized LOC10369050592571804425743133Rat
11385190LOC108351902uncharacterized LOC10835190292583453925871878Rat
1308476Pkhd1PKHD1 ciliary IPT domain containing fibrocystin/polyductin92616496926736704Rat
7542571LOC10254906860S ribosomal protein L19-like92663024226631182Rat
2325550Mir206microRNA 20692679176426791847Rat
9139937LOC103690506uncharacterized LOC10369050692679477426797389Rat
2325527Mir133bmicroRNA 133b92679564926795732Rat
2888Il17ainterleukin 17A92684129926844786Rat
1584090LOC688876similar to peptidyl-prolyl isomerase G (cyclophilin G)92685333426859074Rat
1311398Il17finterleukin 17F92688570226897219Rat
1305168Mcm3minichromosome maintenance complex component 392691405726932201Rat
2318314LOC100362372chaperonin containing Tcp1, subunit 7 (eta)-like92693210926935447Rat
1311710Paqr8progestin and adipoQ receptor family member 892700527027054591Rat
7567345LOC102549795uncharacterized LOC10254979592705445427068065Rat
1587365Efhc1EF-hand domain containing 192706850527107713Rat
1589151Tram2translocation associated membrane protein 292711786127192166Rat
7706003LOC102549948uncharacterized LOC10254994892721049727213259Rat
7706003LOC102549948uncharacterized LOC10254994892721341027218238Rat
7668470LOC102550014uncharacterized LOC10255001492721653227235763Rat
11382929LOC108351996heterogeneous nuclear ribonucleoprotein A3-like92728071927290196Rat
1562107RGD1562107similar to class-alpha glutathione S-transferase92731122927324452Rat
7743195LOC102550123uncharacterized LOC10255012392732558427338992Rat
1307710Tmem14atransmembrane protein 14A92733395627345612Rat
1591980Gsta3glutathione S-transferase alpha 392735749027417023Rat
2753Gsta1glutathione S-transferase alpha 192736640427381004Rat
7634096LOC102550391glutathione S-transferase alpha-3-like92736641227380999Rat
1566137RGD1566137similar to ribosomal protein L10a92738168927454055Rat
7676682LOC102550934E3 ubiquitin-protein ligase makorin-1-like92740388427405373Rat
11474512LOC108351903uncharacterized LOC10835190392741667427423053Rat
9416522LOC103693211transmembrane protein 14A-like92746587227466717Rat
1565402Gsta6glutathione S-transferase alpha 692747527327533939Rat
11461825LOC108351905enhancer of rudimentary homolog pseudogene92748367927485864Rat
1586180p53-psWistar clone pR53P1 p53 pseudogene92754336227544893Rat
1597396Khdc1KH domain containing 192754606927547769Rat
1596202Khdc1bKH domain containing 1B92755443627556770Rat
628848Kcnq5potassium voltage-gated channel subfamily Q member 592756586928141114Rat
11368267LOC108351906ferritin light chain 1 pseudogene92767797327678867Rat
11358095LOC108351907uncharacterized LOC10835190792779049827808947Rat
11415857LOC108351908uncharacterized LOC10835190892839256028407602Rat
620000Rims1regulating synaptic membrane exocytosis 192844040828973246Rat
9133770LOC103693212glyceraldehyde-3-phosphate dehydrogenase pseudogene92887298628876150Rat
1594773LOC689279similar to heterogeneous nuclear ribonucleoprotein C92917777229178662Rat
1309049RGD1309049similar to RIKEN cDNA 4933415F2392933628829337922Rat
1586777LOC684715similar to Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen)92936146329362114Rat
2325588Mir30amicroRNA 30a92954263529542705Rat
2325587Mir30c2microRNA 30c-292956237629562459Rat
11481702LOC108351909E3 ubiquitin-protein ligase RBX1 pseudogene92957155629574977Rat
1308498Ogfrl1opioid growth factor receptor-like 192963417829647903Rat
11380853LOC108351910uncharacterized LOC10835191092965721029678226Rat
11497442LOC10835202060S ribosomal protein L23a pseudogene92970271929703231Rat
620903B3gat2beta-1,3-glucuronyltransferase 292998407730068649Rat
1585595Smap1small ArfGAP 193006888830161753Rat
1588998Sdhaf4succinate dehydrogenase complex assembly factor 493024326130251478Rat
1304927Fam135afamily with sequence similarity 135, member A93025505730335775Rat
9290614LOC103693213uncharacterized LOC10369321393033098030336223Rat
9413639LOC103690507uncharacterized LOC10369050793033774430343427Rat
7580017LOC102553447uncharacterized LOC10255344793036779230395850Rat
1309425Col9a1collagen type IX alpha 1 chain93041900130502307Rat
1308920Col19a1collagen type XIX alpha 1 chain93050800330864836Rat
9363755LOC103690510ADP-ribosylation factor-like protein 3 pseudogene93060633030606878Rat
708471Lmbrd1LMBR1 domain containing 193093955531038381Rat
9343111LOC103690508adhesive plaque matrix protein-like93095171330954592Rat
1591063LOC689564similar to 60S ribosomal protein L1193108419031084757Rat
2323882LOC100362897hypothetical LOC10036289793115527431156274Rat
1309703Adgrb3adhesion G protein-coupled receptor B393128062332022535Rat
7741406LOC10255370860S ribosomal protein L9-like93181117631813720Rat
11365616LOC108351997heat shock protein HSP 90-beta-like93262522032659901Rat
1588763LOC689725similar to chromosome 9 open reading frame 7993286256032868365Rat
2318365LOC100362320hypothetical LOC10036232093292626632926573Rat
11372666LOC108352021uncharacterized LOC10835202193351035733516643Rat
7729430LOC102554152uncharacterized LOC10255415293390976733920026Rat
7637214LOC102554281uncharacterized LOC10255428193446990834486769Rat
1590775LOC501115similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)93454735534547922Rat
6489933Spata31e1SPATA31 subfamily E, member 193528942235295479Rat
1559965RGD1559965similar to WW domain binding protein 1193581278335814348Rat
1596924LOC678760similar to Dipeptidyl-peptidase 3 (Dipeptidyl-peptidase III) (DPP III) (Dipeptidyl aminopeptidase III) (Dipeptidyl arylamidase III)93632334236325209Rat
1592055LOC363208similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP)93640896136410566Rat
1588705LOC689783similar to DnaJ (Hsp40) homolog, subfamily B, member 6 isoform b93681596336816664Rat
2318113LOC100362475zinc finger protein 70693698108236981329Rat
621477Eif4g2-ps1eukaryotic translation initiation factor 4, gamma 2, pseudogene 193705682737060609Rat
1304925Phf3PHD finger protein 393707351437144027Rat
61970Ptp4a1protein tyrosine phosphatase 4A193722336337254222Rat
7648058LOC102556446uncharacterized LOC10255644693723058337233732Rat
7590823LOC102548289uncharacterized LOC10254828993725430437255976Rat
727925Lgsnlengsin, lens protein with glutamine synthetase domain93745860337490117Rat
11448578LOC108351998high mobility group protein B1-like93759023037593651Rat
11380123LOC108351911serine protease inhibitor Kazal-type 11-like93762071837638292Rat
6487654LOC100912306myotilin-like93772793437747498Rat
6487168LOC100912348myotilin-like93774903137761022Rat
1308463Imp4IMP U3 small nucleolar ribonucleoprotein 493776995937775097Rat
1304653Ccdc115coiled-coil domain containing 11593777487637778839Rat
11444069Trnae-uuc5transfer RNA glutamic acid (anticodon UUC) 593778127837781349Rat
7638136LOC102551518uncharacterized LOC10255151893778237637786656Rat
1306566Dstdystonin93790233638296961Rat
7647959LOC102551615uncharacterized LOC10255161593819005738199303Rat
1310392Bend6BEN domain containing 693829725338351312Rat
1305865Zfp451zinc finger protein 45193839546438451585Rat
11379446LOC108351912SUMO-conjugating enzyme UBC9 pseudogene93845171138453205Rat
1585173Bag2BAG cochaperone 293845648738467120Rat
1306867Rab23RAB23, member RAS oncogene family93846978438496185Rat
1585200LOC690009similar to Cofilin-2 (Cofilin, muscle isoform)93850502538505541Rat
631433Prim2DNA primase subunit 293853543538745058Rat
7609582LOC102552941uncharacterized LOC10255294193870721538711464Rat
9469496LOC103693216uncharacterized LOC10369321693872504238730326Rat
1590809LOC367240hypothetical LOC36724093876108438761873Rat
6500780LOC100910005uncharacterized LOC10091000593879988138807790Rat
1586327LOC689973similar to pigpen93889079038892367Rat
1586334LOC689966similar to zinc finger protein 62293896069838962271Rat
621738Khdrbs2KH RNA binding domain containing, signal transduction associated 293950143140008707Rat
6500396LOC100910044elongation factor 1-alpha 1-like94062995440650595Rat
1586396LOC689904similar to ubiquitin-conjugating enzyme E2 variant 194081764240818119Rat
1311586Ptpn18protein tyrosine phosphatase, non-receptor type 1894097208940988790Rat
1309276Prss39protease, serine, 3994099902741012607Rat
11439923LOC108352022uncharacterized LOC10835202294104199741044150Rat
1562188Cfc1cripto, FRL-1, cryptic family 194104535241051979Rat
1561330Prss40protease, serine, 4094106111641069929Rat
1560420Amer3APC membrane recruitment protein 394108941741101108Rat
11356952LOC108351913thymosin beta-10 pseudogene94114128841141722Rat
1562461RGD1562461similar to 60S acidic ribosomal protein P194114863341154006Rat
1586179Arhgef4Rho guanine nucleotide exchange factor 494116056241305015Rat
1583985Fam168bfamily with sequence similarity 168, member B94130557041337536Rat
1310954Plekhb2pleckstrin homology domain containing B294134844741381096Rat
1560533RGD1560533similar to 40S ribosomal protein S1494145052641450979Rat
9126670LOC103690516small nuclear ribonucleoprotein Sm D1-like94151364341514045Rat
7680988LOC102555515uncharacterized LOC10255551594167168641675272Rat
11506234LOC108351914uncharacterized LOC10835191494191980441948189Rat
11389890LOC10835191560S ribosomal protein L21 pseudogene94231565842316167Rat
7668217LOC102553839uncharacterized LOC10255383994245512942501396Rat
6484877LOC100913047histone deacetylase 1-like94250823442509117Rat
1309218Hs6st1heparan sulfate 6-O-sulfotransferase 194262000642659184Rat
619710Uggt1UDP-glucose glycoprotein glucosyltransferase 194269215642805680Rat
7557346LOC102553975uncharacterized LOC10255397594280878142812416Rat
6501582LOC100909803uncharacterized LOC10090980394281839142825578Rat
1359633Neurl3neuralized E3 ubiquitin protein ligase 394283173742841765Rat
7500673LOC102554222uncharacterized LOC10255422294283995242849808Rat
1311041Arid5aAT-rich interaction domain 5A94287190742886725Rat
1309220Kansl3KAT8 regulatory NSL complex subunit 394289943242943224Rat
1583681Fer1l5fer-1-like family member 594294336242998126Rat
1311393Lman2llectin, mannose-binding 2-like94302094043023015Rat
1305571Cnnm4cyclin and CBS domain divalent metal cation transport mediator 494304958743088690Rat
1307926Cnnm3cyclin and CBS domain divalent metal cation transport mediator 394309312043108486Rat
1310398Ankrd23ankyrin repeat domain 2394311098043117585Rat
1559504Ankrd39ankyrin repeat domain 3994311953243127923Rat
1562837Sema4csemaphorin 4C94312941343140442Rat
1564591Fam178bfamily with sequence similarity 178, member B94314360643251440Rat
620608Cox5bcytochrome c oxidase subunit 5B94325970643262039Rat
1307380Actr1bactin related protein 1B94326705343276717Rat
6501168LOC100909859uncharacterized LOC10090985994328277343326274Rat
3983Zap70zeta chain of T cell receptor associated protein kinase 7094333114943353097Rat
1309266Tmem131transmembrane protein 13194335786643515317Rat
1562560Vwa3bvon Willebrand factor A domain containing 3B94360706643779466Rat
7728653LOC102554996uncharacterized LOC10255499694368921743691733Rat
70948Cnga3cyclic nucleotide gated channel subunit alpha 394380741243858225Rat
2323253LOC100359890hypothetical LOC10035989094387200743952943Rat
68386Inpp4ainositol polyphosphate-4-phosphatase type I A94388988744006593Rat
1565095Coa5cytochrome C oxidase assembly factor 594401147144024876Rat
621749Unc50unc-50 inner nuclear membrane RNA binding protein94402499444032896Rat
1305650Mgat4aalpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A94403343344126946Rat
9201972LOC103690517uncharacterized LOC10369051794418800944191595Rat
1310819CracdlCRACD like94419434844309816Rat
621142Tsga10testis specific 1094435165544456576Rat
1310276Lipt1lipoyltransferase 194446662744471986Rat
1307700Mitd1microtubule interacting and trafficking domain containing 194447236444483723Rat
1308196Mrpl30mitochondrial ribosomal protein L3094448380944496116Rat
6496811Lyg2lysozyme G294449750844509921Rat
1560332Lyg1lysozyme G194452759644539320Rat
708355Txndc9thioredoxin domain containing 994464770744657779Rat
735017Eif5beukaryotic translation initiation factor 5B94465872444713518Rat
1306715Rev1REV1, DNA directed polymerase94471413744786330Rat
1308527Aff3AF4/FMR2 family, member 394483797945291964Rat
9456605LOC103690519keratin-associated protein 10-6-like94513873545146909Rat
9408146LOC103690549nucleoside diphosphate kinase, mitochondrial pseudogene94515568845157542Rat
1562137Lonrf2LON peptidase N-terminal domain and ring finger 294546800145506448Rat
621216Chst10carbohydrate sulfotransferase 1094552892845559365Rat
1359122NMSneuromedin S94560555245616912Rat
1309663Pdcl3phosducin-like 394567225745680728Rat
11451021LOC108351999protein transport protein Sec61 subunit gamma pseudogene94574157745742515Rat
11443911LOC108352023uncharacterized LOC10835202394574365045745843Rat
7508205LOC102552746uncharacterized LOC10255274694587459445951194Rat
1309681Npas2neuronal PAS domain protein 294590126246081880Rat
11443626LOC108351916uncharacterized LOC10835191694591971645927355Rat
621202Rpl31ribosomal protein L3194608695946090444Rat
1595491Tbc1d8TBC1 domain family, member 894609061346206672Rat
1560909Cnot11CCR4-NOT transcription complex, subunit 1194627022946279928Rat
1308460Rnf149ring finger protein 14994628554646309692Rat
1564056Creg2cellular repressor of E1A-stimulated genes 294632808846402237Rat
1560724Rfx8regulatory factor X894641440746476076Rat
11433865LOC108351918uncharacterized LOC10835191894647726346481666Rat
2321066LOC100360994cytochrome c oxidase, subunit VI a, polypeptide 1-like94662612446626456Rat
1305322Map4k4mitogen-activated protein kinase kinase kinase kinase 494665744446782545Rat
9142221LOC103690521uncharacterized LOC10369052194668451546685354Rat
9369319LOC103690522uncharacterized LOC10369052294676868846769617Rat
621147Il1r2interleukin 1 receptor type 294684064646881241Rat
9235984LOC103690523uncharacterized LOC10369052394689027146937373Rat
1564447RGD1564447similar to Zgc:5619394695142046951862Rat
2892Il1r1interleukin 1 receptor type 194696229147038139Rat
621782Il1rl2interleukin 1 receptor-like 294704487047093679Rat
2894Il1rl1interleukin 1 receptor-like 194713348347184316Rat
1308589Il18r1interleukin 18 receptor 194718440447217403Rat
727867Il18rapinterleukin 18 receptor accessory protein94722554347255805Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
35623D9Rat4113391555490115555026Ratregion
5050204RH13392119091558593015586805Ratregion
5059382AW53053715891560410815604265Ratregion
5075446RH13859813091561589315616022Ratregion
5071972RH13539121691561977515619991Ratregion
5076626RH13928513291562114115621272Ratregion
5083511BE10032921191563651015636720Ratregion
5079144RH14076114291565389215654033Ratregion
5074174RH13786419591565587415656068Ratregion
44555D9Got14024391566927115669513Ratregion
44555D9Got14024391566927115669691Ratregion
5060096BF38848716791567209515672261Ratregion
5085663BI27677916391569588715696049Ratregion
5037011AU04991518791574337415743560Ratregion
5061484BE11187215591578679815786952Ratregion
5059054BE10276017391587490715875079Ratregion
1630338D9Got20225791592957015929826Ratregion
36510D9Rat409291603431816034409Ratregion
5083205BF39098920691603999416040199Ratregion
5040042RH12805621491605264616052859Ratregion
5054397RH14320114191608033716080477Ratregion
5075838RH13882621691608033716080552Ratregion
5039458RH12771718591608180016081984Ratregion
5026958RH13418520491608506616085269Ratregion
5072278RH13675621991608595516086171Ratregion
5027763RH9464616891608595616086123Ratregion
5507819REN5932125391611279716113049Ratregion
5076364RH13913212491613671916136844Ratregion
5500414REN5958323691616957116169806Ratregion
5500416REN5959524091617226416172503Ratregion
5500418REN5982725291624155316241804Ratregion
5068548AU04708019491625681116257004Ratregion
5500420REN5999425491628373516283988Ratregion
5060126BF38852617891630125216301429Ratregion
5073602RH13753112391634663616346758Ratregion
5502447RH1248918791634673616346822Ratregion
5044588RH13069019591640527516405469Ratregion
5067232AU04788118391642031616420498Ratregion
5078260RH14023618491643798216438165Ratregion
5085483AI17714720691644046816440673Ratregion
5078260RH14023618491644490416445087Ratregion
5060126BF38852617891646309716463274Ratregion
5059840BF38800815591647844516478599Ratregion
5503260UniSTS:2376588391649513816495220Ratregion
5026696RH13318516591651493616515100Ratregion
5061128AW52616516091651527916515438Ratregion
37634D9Rat7921591651994816520166Ratregion
5071774RH13527620091653904116539240Ratregion
5026742RH13336218391655815716558349Ratregion
5055783RH14400013691660544716605773Ratregion
5042910RH12971721591661013016610344Ratregion
5039670RH12783921191661034916610559Ratregion
5036410UniSTS:14385023191661037916610609Ratregion
5079538RH14105618191661853616618716Ratregion
5047826RH13255019391662114016621332Ratregion
5086016BM38383015991662633816626487Ratregion
5073602RH13753112391662959816629720Ratregion
5502447RH1248918791662969816629784Ratregion
5501886MARC_16785-16786:1033500245:365091664118716641836Ratregion
5040812RH12849719491664449916644973Ratregion
5039594RH12779520291666109116661292Ratregion
5047390RH13230019491668162716681820Ratregion
5504570PMC305791P167191673840316739395Ratregion
5504570PMC305791P167191673872516739395Ratregion
5503470SRF_346773091674502316745752Ratregion
5051587AW0499428991674673216746820Ratregion
5039092RH12750821091674691116747120Ratregion
5071732RH13525318191674911916749299Ratregion
5062870BE11313016091683509216835251Ratregion
5078580RH14042621891689057816890794Ratregion
5027521AW04802314391690199616902138Ratregion
10873D9Uwm310191693196816932066Ratregion
5063946AW53581315491694581116945964Ratregion
5080942RH14187220291694884716949048Ratregion
5075654RH13871914491697519316975336Ratregion
40894D9Rat13324991701760217017848Ratregion
5027523AI4134818791706130117061387Ratregion
5049934RH13376618091706142417061603Ratregion
5075388RH13856519491709297317093166Ratregion
5028593AI4152818791711033817110424Ratregion
5081306RH14208419691711129917111494Ratregion
5057932BF38634115091712158417121733Ratregion
5038924RH12741121791712438417124692Ratregion
5080644RH14169918591712533717125521Ratregion
5501742MARC_10377-10378:999102157:1147591715988417161358Ratregion
5030189AI14567918791719775917197946Ratregion
5039636RH12781921591723838717238601Ratregion
38764D9Rat8111291726039217260503Ratregion
5065056BF40559512591732028117320405Ratregion
5504438PMC20712P193491733940917340342Ratregion
1638026D9Wox4219091735409517354284Ratregion
5506575VEGF_112782491735423117355054Ratregion
1629708D9Wox4316291735508317355244Ratregion
44556D9Got1818191743609017436270Ratregion
5067764AU04755024591752988417530123Ratregion
35104D9Rat16013291756820917568340Ratregion
5040254RH12817820791768780017688006Ratregion
5070404AI84681614291768804417688185Ratregion
5072684RH13699221791772521317725429Ratregion
44557D9Got1717491776572917765902Ratregion
5072776RH13704620891779869917798906Ratregion
5088869AU04881814691781422017814365Ratregion
5042368RH12939418291782341017823591Ratregion
5039152RH12754219691782352317823718Ratregion
5046654RH13187820191782768317827883Ratregion
5032853RH13673018791784625817846446Ratregion
7206718D17Mit3521691784825017848465Ratregion
5071560RH13515318791784859317848779Ratregion
5067308AU04783413691787400517874140Ratregion
41556D9Rat13216091788379917883946Ratregion
5045680RH13131718191798811417988294Ratregion
5028645RH12575525491798817317988426Ratregion
35336D9Rat3928891802262018022907Ratregion
5025206RH12742421191826029718260507Ratregion
36063D9Rat3717191826934018269510Ratregion
35437D9Rat3815191828772518287888Ratregion
5061512BE10537315591835063218350786Ratregion
5035713Runx230991856503818565346Ratregion
5031171BE11684615491876179318761946Ratregion
5031352PMC150810P110391876911318769215Ratregion
44558D9Hmgc122891886764618867873Ratregion
5087368BQ20949021391896531918965531Ratregion
44559D9Got2212991907594219076070Ratregion
5069402AU0465239391916759519167690Ratregion
1635603D9Got21526291934855219348815Ratregion
1634453D9Got21319991936780319368001Ratregion
5083535BI27609117591938612119386295Ratregion
5062564BF40342017891943645419436631Ratregion
5085788BM38501716191951173819511898Ratregion
5048858RH13314621091951862419518833Ratregion
35871D9Rat3614791952048919520635Ratregion
5027671Dscr1l123091952086419521093Ratregion
38684D9Rat7823391956686719567109Ratregion
5030167BF4011669491958794619588039Ratregion
5030167BF4011669491959853919598632Ratregion
38320D9Rat6619991961343419613639Ratregion
60658D9Got1924791966734619667592Ratregion
39890D9Rat19322191968678019687000Ratregion
60660D9Got2421591969505719695271Ratregion
5063502BF39896711591973884419738958Ratregion
42880D9Rat18220091976060619760809Ratregion
35439D9Rat3514591979410119794233Ratregion
44562D9Got2016491987803019878193Ratregion
5060528BE11029315491993271619932869Ratregion
5079838RH14123221992001446020014678Ratregion
5072586RH13693418292008320320083384Ratregion
42879D9Rat18120692008387520084064Ratregion
1629214D9Wox3624092009477620095015Ratregion
44560D9Got2324692013870220138947Ratregion
44547D9Got2615692015656620156721Ratregion
5502160MARC_7181-7182:996687603:138792021005720210443Ratregion
5084724AI41138721392021250920212721Ratregion
5054107RH14303425192021926920219519Ratregion
5074106RH13782520392024517420245376Ratregion
1634879D4Wox5026492024924920249512Ratregion
5059762BE10318717892025106220251239Ratregion
10523D4Wox1518092025376720253936Ratregion
11146D1Mgh3011892025377120253888Ratregion
42154D4Arb2324092025416720254409Ratregion
11377D4Mit111892025421920254369Ratregion
10522D4Wox1412092025422020254346Ratregion
5087842UniSTS:14299218392025694220257124Ratregion
10526D4Got13414792025900620259152Ratregion
10524D4Mit311992025903120259151Ratregion
5043142RH12985621692026021220260427Ratregion
5036273EC218RR12092026131420261433Ratregion
5061732BF40275824392026798920268231Ratregion
44563D9Got2117892033311420333291Ratregion
5058520BI2906699492043469120434784Ratregion
44561D9Got2521492051085820511071Ratregion
5045018RH13093619792054709520547573Ratregion
5063810AW53527718092059168120591860Ratregion
5057416AI01043512692086162020861745Ratregion
5040900RH12854820192098217320982373Ratregion
34963D9Rat3415392104035921040511Ratregion
5088761AU04876117092106129721061466Ratregion
5035182AW52658117292112330221123473Ratregion
5059196BF38762715292113195721132108Ratregion
41928D9Rat3328692134390621344181Ratregion
37472D9Rat8724292135585421356081Ratregion
44564D9Got2717692142277021422945Ratregion
5068402AU04716818792218977822189964Ratregion
5035402BE11465118692242782522428010Ratregion
5504111px-6g713792267119322671329Ratregion
43124D18Rat12224292292934022929572Ratregion
36707D9Rat3216092313905223139209Ratregion
5042054RH12921220892346522623465433Ratregion
5035490BQ19602621092359636923596578Ratregion
5085014AI01010714992400259824002746Ratregion
1638936D9Wox3814092406995324070092Ratregion
5082963BI28143911192408733424087444Ratregion
5062256BE10640415192409710824097258Ratregion
36157D9Rat3116292485564224855802Ratregion
5067488AU04771410692504868325048788Ratregion
5031416AU04839313092528270825282837Ratregion
5036631AU04865320392528683625287038Ratregion
5502975Tcfap2b47992543622425436702Ratregion
44565D9Got2816392554215025542312Ratregion
44567D9Wox1915692569234225692517Ratregion
1334445D9Wox1817892569237325692570Ratregion
40022D9Rat15217492575432025754485Ratregion
44568D9Wox1620092581918525819356Ratregion
41814D9Rat19214792594356725943718Ratregion
44566D9Got2919492598702625987219Ratregion
5501478D3S1674092610684126106869Ratregion
5026652RH13302518092616019026160369Ratregion
5089245AU04904121892632687926327096Ratregion
5069796AU02800516692656322726563392Ratregion
44569D9Got3024092661224326612482Ratregion
33583D9Mit927192685602426856285Ratregion
5035510EST6H1092685647826856774Ratregion
5080084RH14137418092691414226914321Ratregion
5502086MARC_3939-3940:996679197:321792692944326930053Ratregion
5044034RH13037218092704103727041216Ratregion
5039450RH12771320992705422327054431Ratregion
5074234RH13789922992706723927067467Ratregion
5071406RH13506319792711273427112930Ratregion
5084434AI23519411792711334127113457Ratregion
5080982RH14189518292711587327116054Ratregion
5065308AI53519210492711800127118104Ratregion
5087582PMC344171P190892711953427120441Ratregion
44573D9Got3315292720677127206922Ratregion
5067106AU04796120092723468427234883Ratregion
44571D9Got3215592723469527234849Ratregion
1636389D9Got22218192730216527302345Ratregion
5074636RH13813124492732413427324377Ratregion
5073660RH13756515292734531727345468Ratregion
5073660RH13756515292735100727351158Ratregion
5026284RH13162121792737229727372513Ratregion
5026284RH13162121792744419527444411Ratregion
40738D9Rat13014092748603627486155Ratregion
5083753AA80069816092756330827563467Ratregion
5079608RH14109918092756635327566532Ratregion
5062272BE10646115192764743427647583Ratregion
5090237AU04963114692770308527703228Ratregion
5090237AU04963114692770308527703411Ratregion
5033217RH13801423592781744027817674Ratregion
42884D9Rat18024492785856027859505Ratregion
42884D9Rat18024492785927127859505Ratregion
44570D9Got3123592804552028045754Ratregion
5046796RH13195918192813382628134006Ratregion
1628057D9Wox3492844243728442614Ratregion
5066502AU04831822892853887228539095Ratregion
5057854BF38626217992870211828702296Ratregion
5064758BF4050239292872789128727982Ratregion
5075018RH13835112092873111628731235Ratregion
5082955BF39048521492884935028849563Ratregion
5060010BF40026321792884944928849665Ratregion
5061002BF4016319492889018428890277Ratregion
5061002BF4016319492892009628920189Ratregion
5087054AI40639319092895066828950857Ratregion
5057868BE10160420892896805528968262Ratregion
5062970BE11351216992896870928968877Ratregion
5087054AI40639319092898085228981041Ratregion
5057868BE10160420892899823728998444Ratregion
5062970BE11351216992899889128999059Ratregion
37416D9Rat7019092907507929075268Ratregion
5068108AU04734315792913413029134286Ratregion
5069780AU02875825592922639829226653Ratregion
44574D9Got3519492931466329314856Ratregion
39400D9Rat12820992935431329354523Ratregion
5506583AW46451710392936164829361750Ratregion
5502353RH12456518192936176129361941Ratregion
36984D9Rat2912992946697029467098Ratregion
502783105.MMHAP59FLB2.seq17492956262329562796Ratregion
5085268BF28334015492962950029629653Ratregion
5077482RH13978218192963045829630638Ratregion
5077814RH13997521492963126329631476Ratregion
5076158RH13901220292963694029637141Ratregion
5053981RH14296217192963695129637121Ratregion
5055117RH14361612992964311329643429Ratregion
5059906BF38819715392968474729684899Ratregion
1636739D9Got20324792975934329759589Ratregion
5066774AU04815917892986209929862276Ratregion
5503012B3gat242892998471629985143Ratregion
5088333AU04850721293006302930063240Ratregion
5075868RH13884317293006846930068640Ratregion
5028374AI4621759393006884930068941Ratregion
5084708AI17916811393006886930068981Ratregion
7206494UniSTS:54667859593006909630069690Ratregion
1632314D9Got23024093011630230116548Ratregion
44579D9Got12929693016398630164278Ratregion
44577D9Got13127793018658030186856Ratregion
5047010RH13208221393022675930226971Ratregion
5047010RH13208221393024250730242719Ratregion
5049284RH13339219293024340430243595Ratregion
5055625RH14390911993024922730249345Ratregion
5071444RH13508521993025203530252253Ratregion
5042502RH12947218393025509830255280Ratregion
5035496AI55524920393025572230255924Ratregion
5079014RH14068419193032501830325208Ratregion
5506360UniSTS:478964160193043933330440933Ratregion
5055165RH14364320193049953130499731Ratregion
5025642RH12910122093050203930502258Ratregion
5032851RH13672315593050815530508309Ratregion
5056731RH14454716493050916930509332Ratregion
44578D9Got13025493084910730849360Ratregion
5031946AU04660225093090118430901428Ratregion
5082087BF40940013493093900830939141Ratregion
5032811RH13538718493094478230944965Ratregion
5041172RH12870421993103813631038354Ratregion
44580D9Got4016293111856131118722Ratregion
5058848BF39371513593127571131275845Ratregion
5064372BF39914219693128970031289895Ratregion
5082571BE11975115093129590431296053Ratregion
5065264BE12131120193129742431297625Ratregion
5065088BF40576620793129754431297750Ratregion
5087307AW53158114193139078331390923Ratregion
41772D9Rat15824693139122431391495Ratregion
5089227AU04903025293140490031405151Ratregion
5033149RH13777814893152901431529161Ratregion
5059652BE09754521493169688531697098Ratregion
5074158RH13785512393189621331896335Ratregion
1640746D9Got24311393190595331906065Ratregion
44576D9Got3916093234206632342225Ratregion
44576D9Got3916093234206632342318Ratregion
2302957D9Mco7417793267780732677983Ratregion
625824D9Got3620393271898632719188Ratregion
5089137AU04897519393329170533291897Ratregion
1639666D9Got2378993373690533736993Ratregion
5066974AU04804013993400135834001496Ratregion
1637738D9Got22824493400306834003311Ratregion
44582D9Got4312693487457634874701Ratregion
44581D9Got3826893489662034896886Ratregion
34286D9Mgh614393492539234925534Ratregion
44583D9Got4521993603542836035644Ratregion
44583D9Got4521993604390036044116Ratregion
44585D9Got4115193616054936160697Ratregion
5034361SHGC-5969422393632463036324852Ratregion
55027409STS0113993698094236981080Ratregion
44586D9Got13219193702158837021778Ratregion
5055051RH14357727393713910737139379Ratregion
5085244BM38998518793747671937476904Ratregion
40282D9Rat15112593749213837492262Ratregion
5056151RH14421313893776864837768785Ratregion
5077960RH14006018893776925737769444Ratregion
5043888RH13028515293776999237770143Ratregion
5025788RH12966419593776999237770186Ratregion
5026720RH13327520893777958037779787Ratregion
5090307AU04967313393784132137841453Ratregion
5063444BI30180017493785480937854982Ratregion
5030969BF40522918193791543337916144Ratregion
41890D9Rat19114893792838437928532Ratregion
5085439AI17560216393797335437973516Ratregion
5054335RH14316524693802704538027292Ratregion
5506975fc48d10.y146793815212338152589Ratregion
5030229BE09915017393819909038199262Ratregion
7206496UniSTS:546686162293834300738344628Ratregion
5055737RH14397321093841031238410521Ratregion
5071078RH13487418993841377138413959Ratregion
5053401RH14262714593841854638418690Ratregion
5062924BF39802624693844147038441715Ratregion
39024D9Rat5922593844727538447499Ratregion
5084148AI17627020493845131338451516Ratregion
5084362AI17667717693847008538470260Ratregion
5049338RH13342318493874465838744841Ratregion
5028735STS-AA00978116093896209738962256Ratregion
7205782D2S34093493934469439345627Ratregion
5067680AU04760016993969601039696175Ratregion
35164D9Rat5617694004363040043801Ratregion
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38274D9Rat5821594121815541218369Ratregion
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42885D9Rat15715594170883041708994Ratregion
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5503398U2388617194195281441952984Ratregion
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39788D9Rat14716094270499342705152Ratregion
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5502473RH1249838294273097242731053Ratregion
38914D9Rat9111994281025742810375Ratregion
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44590D9Got4416194291302642913158Ratregion
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40088D9Rat14812694331170443311829Ratregion
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5087789D1Bwg0491e15994335794443358102Ratregion
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5074576RH13809612394337386143373983Ratregion
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42359D9Rat19020194359129343591490Ratregion
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42360D9Rat18914794394564243945788Ratregion
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5055011RH14355412894401317044013297Ratregion
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5066972AU04804125794437301544373267Ratregion
37220D9Rat7320194440205344402253Ratregion
5048370RH13286418694441433844414523Ratregion
44591D9Got4919694443857344438768Ratregion
5034890AI41049519294447040344470594Ratregion
5080258RH14147621794447214544472362Ratregion
44592D9Got4822294447367144473892Ratregion
5088619AU04867717394447945944479631Ratregion
5046676RH13189020894449396944494176Ratregion
5088619AU04867717394455657744556749Ratregion
5046676RH13189020894457108744571294Ratregion
5026706RH133222094464729244647484Ratregion
5050098RH13386121394464782444648036Ratregion
5028907RH14277610694470898444709089Ratregion
5060734BF38905413494471525244715385Ratregion
5062678BF40378815194474316244743312Ratregion
5062632BF40362717994483495944835137Ratregion
5079384RH14096518594483805444838238Ratregion
5061106AW53234015394495551444955666Ratregion
5058694BE09699216794497348844973653Ratregion
5085832BF38817417294497603644976207Ratregion
5060926BI28698413094497750744977636Ratregion
5055331RH14374013494499090644991039Ratregion
35819D9Rat2614794502964845029794Ratregion
34413D9Mgh315094520989845210045Ratregion
40888D9Rat12720394520990945210109Ratregion
5069760AU02904818194526906545269245Ratregion
5034578BE11981515094528322345283372Ratregion
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5049010RH13323420394568032145680523Ratregion
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1632116D9Got22715194572828645728436Ratregion
5057684BF39257120594591296145913165Ratregion
5082367BE11926715294604184646041997Ratregion
5088022Npas227094608110546081374Ratregion
5052907RH14234315894608164846081805Ratregion
5081795BE11830617594609076246090936Ratregion
5039422RH12769719394609110646091298Ratregion
5502762TBC1D818094609270946093040Ratregion
5029171RH14378414394612447846125934Ratregion
5030905BE10807516494613468146134844Ratregion
44594D9Got5114694622663146226776Ratregion
5064090BE11404215394627826446278416Ratregion
5030813BE12031316994628036746280535Ratregion
5072694RH13699817094628596846286137Ratregion
5054733RH14339413394629925446299386Ratregion
5030411BE10622118394632745546327637Ratregion
5075878RH13884920994635553946355747Ratregion
5066178BF41384912394635675846356880Ratregion
5081392AI45471015294641921646419367Ratregion
5066052BE11664815094644605146446200Ratregion
5034191RH14171220494657273146572934Ratregion
5043380RH12999221894665594446656161Ratregion
5082361BE11925316794675611646756282Ratregion
5047096RH13213118694675648546756670Ratregion
5081697BG3717339694676481546764910Ratregion
5081386AI45403818794677406246774248Ratregion
5499699UniSTS:2341159694678088446780979Ratregion
5028376AU04593412594678088446781008Ratregion
5081515AW43364520694678218946782394Ratregion
5064602BE10819115394678510546785257Ratregion
33979D9Mit420494689230846892511Ratregion
61288D9Uia917994695224946952427Ratregion
5051929RH9474011294702943347029544Ratregion
5051931RH9474111094703524847035358Ratregion
5080522RH14162821694703688047037095Ratregion
5052081RH9482922994717396647174194Ratregion
39246D9Rat6323794724896547249201Ratregion
Position Markers

Flank 1: (D9Rat41)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2913,533,770 - 13,533,896 (+)MAPPER
Rnor_6.0915,554,901 - 15,555,026NCBI
Rnor_5.0914,477,917 - 14,478,042UniSTS
RGSC_v3.498,991,206 - 8,991,332RGD
RGSC_v3.498,991,207 - 8,991,332UniSTS
RGSC_v3.198,988,529 - 8,988,654RGD
Celera911,284,240 - 11,284,365UniSTS
RH 3.4 Map946.9RGD
RH 3.4 Map946.9UniSTS
RH 2.0 Map948.0RGD
SHRSP x BN Map911.8399RGD
Cytogenetic Map9q12UniSTS
Peak: (D9Rat158)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2927,532,063 - 27,532,335 (+)MAPPER
Rnor_6.0931,391,224 - 31,391,495NCBI
Rnor_5.0930,206,184 - 30,206,455UniSTS
RGSC_v3.4923,881,721 - 23,881,993RGD
RGSC_v3.4923,881,722 - 23,881,993UniSTS
RGSC_v3.1923,883,135 - 23,883,407RGD
Celera925,064,937 - 25,065,208UniSTS
SHRSP x BN Map927.9198UniSTS
SHRSP x BN Map927.9198RGD
Cytogenetic Map9q13UniSTS
Flank 2: (D9Rat63)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2942,791,513 - 42,791,750 (+)MAPPER
Rnor_6.0947,248,965 - 47,249,201NCBI
Rnor_5.0946,933,155 - 46,933,391UniSTS
RGSC_v3.4939,691,558 - 39,691,794UniSTS
RGSC_v3.4939,691,557 - 39,691,794RGD
RGSC_v3.1939,692,972 - 39,693,208RGD
Celera940,535,370 - 40,535,606UniSTS
RH 3.4 Map9415.8UniSTS
RH 3.4 Map9415.8RGD
RH 2.0 Map9409.9RGD
SHRSP x BN Map937.6898RGD
Cytogenetic Map9q21UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9116520166Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9129467098Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9140383872Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9140383872Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9140383872Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9145029794Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9105522293442944Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9190783415555026Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9235572247355722Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9235572247355722Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9288097747375681Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9288097747880977Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9498609549986095Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9498609549986095Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9572425425692342Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)91221677157216771Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)91242546357425463Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)91242546357425463Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91555490147249201Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91952048945029794Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92488509969885099Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92569234292741406Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92569237370692373Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92575432054885226Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92748603663264281Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92748603666757620Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92748615588333183Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92907507983686404Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)929075079122095297Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)929466970107878528Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93238513377385133Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93764235182642351Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93764235182642351Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)94126103490024806Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94126103498606834Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)941261034102531865Rat
6903941Pur31Proteinuria QTL 310.036total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94657976991579769Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94657976991579769Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94695242783686153Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94724896594124663Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type backcross  
qtl_general number of animals used: 187 1599317
qtl_general gender: 53-58 days old virgin females 1599317
qtl_general spans 20 cM 1599317
qtl_general allele responsible: WKY allele reduces the latency 1599317
qtl_general inducing agent and dosage: single dosage of DMBA, 65mg/kg 1599317