 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Cellular Component
Molecular Function
Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | Ikegami H, etal., Biochem Biophys Res Commun 1993 Apr 30;192(2):677-82. |
| 3. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedGenomics
Comparative Map Data| Abhd16a (Rattus norvegicus - Norway rat) |
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| ABHD16A (Homo sapiens - human) |
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| Abhd16a (Mus musculus - house mouse) |
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| Abhd16a (Chinchilla lanigera - long-tailed chinchilla) |
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| ABHD16A (Pan paniscus - bonobo/pygmy chimpanzee) |
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| ABHD16A (Canis lupus familiaris - dog) |
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| Abhd16a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| ABHD16A (Sus scrofa - pig) |
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| ABHD16A (Chlorocebus sabaeus - African green monkey) |
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| Abhd16a (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| D20Yum51 |
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| AI326074 |
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| RH138896 |
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| RH133704 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 3 | 43 | 47 | 31 | 19 | 31 | 8 | 11 | 74 | 35 | 41 | 11 | 8 |
| Low | 10 | 10 | 10 | ||||||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_212531 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AAHX01099605 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AC094348 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC091227 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BX883045 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH474121 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CK653480 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000077082 ⟹ ENSRNOP00000071617 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000078576 ⟹ ENSRNOP00000071276 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000079886 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000081760 ⟹ ENSRNOP00000070241 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000083284 ⟹ ENSRNOP00000073114 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000083411 ⟹ ENSRNOP00000068595 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000085611 ⟹ ENSRNOP00000069494 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000086950 ⟹ ENSRNOP00000072329 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000089490 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000091738 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_212531 ⟹ NP_997696 | ||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
TGCTGACGTCACGCACGCACGCACGCAGCGCCCAGGAGGCTACGGGCGGGGCCGGCGGGGACCThide sequence |
Protein Sequences| Protein RefSeqs | NP_997696 | (Get FASTA) | NCBI Sequence Viewer |
| GenBank Protein | AAH91227 | (Get FASTA) | NCBI Sequence Viewer |
| CAE83991 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL83511 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL83512 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL83513 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL83514 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL83515 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL83516 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL83517 | (Get FASTA) | NCBI Sequence Viewer | |
| Q6MG55 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_997696 ⟸ NM_212531 |
| - UniProtKB: | Q6MG55 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MAKLLSCVLGPRLYKIYRERDTDRAATSVPETPTAVPAASSSSWDSYYQPRALEKHADSILALAhide sequence |
| RefSeq Acc Id: | ENSRNOP00000071617 ⟸ ENSRNOT00000077082 |
| RefSeq Acc Id: | ENSRNOP00000069494 ⟸ ENSRNOT00000085611 |
| RefSeq Acc Id: | ENSRNOP00000070241 ⟸ ENSRNOT00000081760 |
| RefSeq Acc Id: | ENSRNOP00000071276 ⟸ ENSRNOT00000078576 |
| RefSeq Acc Id: | ENSRNOP00000068595 ⟸ ENSRNOT00000083411 |
| RefSeq Acc Id: | ENSRNOP00000073114 ⟸ ENSRNOT00000083284 |
| RefSeq Acc Id: | ENSRNOP00000072329 ⟸ ENSRNOT00000086950 |
Protein Domains
AB hydrolase-1
TranscriptomePromoters| RGD ID: | 13701395 | ||||||||
| Promoter ID: | EPDNEW_R11913 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Abhd16a_1 | ||||||||
| Description: | abhydrolase domain containing 16A | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1303164 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000056637 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000068595 | UniProtKB/TrEMBL |
| ENSRNOP00000069494 | UniProtKB/TrEMBL | |
| ENSRNOP00000070241 | UniProtKB/TrEMBL | |
| ENSRNOP00000071276 | UniProtKB/TrEMBL | |
| ENSRNOP00000071617 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSRNOP00000072329 | UniProtKB/TrEMBL | |
| ENSRNOP00000073114 | UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000077082 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOT00000078576 | UniProtKB/TrEMBL | |
| ENSRNOT00000081760 | UniProtKB/TrEMBL | |
| ENSRNOT00000083284 | UniProtKB/TrEMBL | |
| ENSRNOT00000083411 | UniProtKB/TrEMBL | |
| ENSRNOT00000085611 | UniProtKB/TrEMBL | |
| ENSRNOT00000086950 | UniProtKB/TrEMBL | |
| Gene3D-CATH | 3.40.50.1820 | UniProtKB/Swiss-Prot |
| IMAGE_CLONE | IMAGE:7317323 | IMAGE-MGC_LOAD |
| InterPro | AB_hydrolase | UniProtKB/Swiss-Prot |
| AB_hydrolase_1 | UniProtKB/Swiss-Prot | |
| ABHD16A | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:361796 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:108968 | IMAGE-MGC_LOAD |
| NCBI Gene | 361796 | ENTREZGENE |
| PANTHER | PTHR12277:SF54 | UniProtKB/Swiss-Prot |
| Pfam | Abhydrolase_1 | UniProtKB/Swiss-Prot |
| PhenoGen | Abhd16a | PhenoGen |
| Superfamily-SCOP | SSF53474 | UniProtKB/Swiss-Prot |
| UniGene | Rn.203264 | ENTREZGENE |
| UniProt | A0A096MJ82_RAT | UniProtKB/TrEMBL |
| A0A096MJC0_RAT | UniProtKB/TrEMBL | |
| A0A096MJX3_RAT | UniProtKB/TrEMBL | |
| A0A096MKA7_RAT | UniProtKB/TrEMBL | |
| A0A0G2K0X5_RAT | UniProtKB/TrEMBL | |
| A0A0G2K2Q0_RAT | UniProtKB/TrEMBL | |
| A0A0G2K4N8_RAT | UniProtKB/TrEMBL | |
| ABHGA_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2020-02-13 | Abhd16a | abhydrolase domain containing 16A, phospholipase | Abhd16a | abhydrolase domain containing 16A | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2011-07-28 | Abhd16a | abhydrolase domain containing 16A | Bat5 | HLA-B associated transcript 5 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2005-11-17 | Bat5 | HLA-B associated transcript 5 | Symbol and Name status set to approved | 1299863 | APPROVED | ||
| 2005-07-14 | Bat5 | HLA-B associated transcript 5 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Abhd16a | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1303164 |
| Created: | 2004-12-03 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-06-09 |
| Status: | ACTIVE |
