Abhd16a (abhydrolase domain containing 16A, phospholipase) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer VCMap
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Abhd16a (abhydrolase domain containing 16A, phospholipase) Rattus norvegicus
Analyze
Symbol: Abhd16a
Name: abhydrolase domain containing 16A, phospholipase
RGD ID: 1303164
Description: Predicted to enable acylglycerol lipase activity; palmitoyl-(protein) hydrolase activity; and phospholipase activity. Predicted to be involved in monoacylglycerol catabolic process; phosphatidylserine catabolic process; and prostaglandin catabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 86. Orthologous to human ABHD16A (abhydrolase domain containing 16A, phospholipase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; finasteride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: abhydrolase domain containing 16A; abhydrolase domain-containing protein 16A; alpha/beta hydrolase domain-containing protein 16A; Bat5; HLA-B associated transcript 5; HLA-B-associated transcript 5; HLA-B-associated transcript 5 homolog; monoacylglycerol lipase ABHD16A; NG26; phosphatidylserine lipase ABHD16A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,719,089 - 3,733,952 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl203,719,091 - 3,733,927 (-)Ensembl
Rnor_6.0205,080,070 - 5,094,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,080,070 - 5,094,935 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,153,000 - 7,168,193 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,782,759 - 3,797,620 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1203,782,984 - 3,797,821 (-)NCBI
Celera204,291,911 - 4,306,777 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. MHC-linked diabetogenic gene of the NOD mouse: molecular mapping of the 3' boundary of the diabetogenic region. Ikegami H, etal., Biochem Biophys Res Commun 1993 Apr 30;192(2):677-82.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:25290914   PMID:25580854  


Genomics

Comparative Map Data
Abhd16a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,719,089 - 3,733,952 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl203,719,091 - 3,733,927 (-)Ensembl
Rnor_6.0205,080,070 - 5,094,935 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,080,070 - 5,094,935 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,153,000 - 7,168,193 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,782,759 - 3,797,620 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1203,782,984 - 3,797,821 (-)NCBI
Celera204,291,911 - 4,306,777 (+)NCBICelera
Cytogenetic Map20p12NCBI
ABHD16A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,686,955 - 31,703,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl631,686,955 - 31,703,356 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,654,732 - 31,671,101 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,762,715 - 31,779,067 (-)NCBINCBI36hg18NCBI36
Build 34631,762,714 - 31,779,067NCBI
Celera633,252,945 - 33,269,362 (-)NCBI
Cytogenetic Map6p21.33NCBI
HuRef631,440,951 - 31,457,370 (-)NCBIHuRef
CHM1_1631,656,862 - 31,673,273 (-)NCBICHM1_1
T2T-CHM13v2.0631,539,989 - 31,556,359 (-)NCBI
Abhd16a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,308,210 - 35,321,963 (+)NCBIGRCm39mm39
GRCm39 Ensembl1735,308,239 - 35,321,963 (+)Ensembl
GRCm381735,089,234 - 35,102,987 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,089,263 - 35,102,987 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,226,236 - 35,239,932 (+)NCBIGRCm37mm9NCBIm37
MGSCv361734,697,347 - 34,711,043 (+)NCBImm8
Celera1738,185,979 - 38,199,670 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
Abhd16a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437227,407 - 241,830 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437227,407 - 241,702 (-)NCBIChiLan1.0ChiLan1.0
ABHD16A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,238,872 - 32,253,856 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,238,872 - 32,253,856 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,348,640 - 31,364,777 (-)NCBIMhudiblu_PPA_v0panPan3
ABHD16A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,167,723 - 1,182,520 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,167,721 - 1,182,453 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,304,284 - 1,319,089 (-)NCBI
ROS_Cfam_1.0121,313,091 - 1,327,889 (-)NCBI
ROS_Cfam_1.0 Ensembl121,313,089 - 1,328,210 (-)Ensembl
UMICH_Zoey_3.1121,172,393 - 1,187,217 (-)NCBI
UNSW_CanFamBas_1.0121,239,568 - 1,254,388 (-)NCBI
UU_Cfam_GSD_1.0121,306,774 - 1,321,843 (-)NCBI
Abhd16a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,716,402 - 35,732,375 (-)NCBI
SpeTri2.0NW_0049367271,828,966 - 1,843,334 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABHD16A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,800,936 - 23,814,947 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,800,932 - 23,814,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,448,853 - 27,451,015 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABHD16A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,320,749 - 40,336,922 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,320,878 - 40,336,720 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604431,598,745 - 31,614,930 (-)NCBIVero_WHO_p1.0
Abhd16a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,505,606 - 24,520,092 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462475424,505,572 - 24,520,092 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D20Yum51  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,734,077 - 3,734,302 (-)MAPPERmRatBN7.2
Rnor_6.0205,079,724 - 5,079,944NCBIRnor6.0
Rnor_5.0207,152,654 - 7,152,874UniSTSRnor5.0
RGSC_v3.4203,797,746 - 3,797,966UniSTSRGSC3.4
Celera204,291,547 - 4,291,785UniSTS
Cytogenetic Map20p12UniSTS
AI326074  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,719,539 - 3,719,746 (-)MAPPERmRatBN7.2
Rnor_6.0205,094,278 - 5,094,484NCBIRnor6.0
Rnor_5.0207,167,536 - 7,167,742UniSTSRnor5.0
Celera204,306,120 - 4,306,326UniSTS
Cytogenetic Map20p12UniSTS
RH138896  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,727,525 - 3,727,645 (-)MAPPERmRatBN7.2
Rnor_6.0205,086,381 - 5,086,500NCBIRnor6.0
Rnor_5.0207,159,639 - 7,159,758UniSTSRnor5.0
RGSC_v3.4203,791,194 - 3,791,313UniSTSRGSC3.4
Celera204,298,222 - 4,298,341UniSTS
RH 3.4 Map2052.52UniSTS
Cytogenetic Map20p12UniSTS
RH133704  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,719,130 - 3,719,391 (-)MAPPERmRatBN7.2
Rnor_6.0205,094,633 - 5,094,893NCBIRnor6.0
Rnor_5.0207,167,891 - 7,168,151UniSTSRnor5.0
RGSC_v3.4203,782,801 - 3,783,061UniSTSRGSC3.4
Celera204,306,475 - 4,306,735UniSTS
RH 3.4 Map2053.02UniSTS
Cytogenetic Map20p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2036216564606812Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:27
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000001121
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 47 31 19 31 8 11 74 35 41 11 8
Low 10 10 10
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000077082   ⟹   ENSRNOP00000071617
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,719,091 - 3,733,927 (-)Ensembl
Rnor_6.0 Ensembl205,080,166 - 5,094,710 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078576   ⟹   ENSRNOP00000071276
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,094,468 - 5,094,935 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079886
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,093,478 - 5,094,737 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081760   ⟹   ENSRNOP00000070241
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,080,139 - 5,082,430 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083284   ⟹   ENSRNOP00000073114
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,719,091 - 3,733,879 (-)Ensembl
Rnor_6.0 Ensembl205,085,712 - 5,094,935 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083411   ⟹   ENSRNOP00000068595
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,087,627 - 5,093,810 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085611   ⟹   ENSRNOP00000069494
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,090,501 - 5,093,426 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086950   ⟹   ENSRNOP00000072329
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,080,070 - 5,082,430 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089490
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,090,781 - 5,094,185 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091738
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,080,127 - 5,081,691 (+)Ensembl
RefSeq Acc Id: NM_212531   ⟹   NP_997696
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,719,089 - 3,733,952 (-)NCBI
Rnor_6.0205,080,070 - 5,094,935 (+)NCBI
Rnor_5.0207,153,000 - 7,168,193 (+)NCBI
RGSC_v3.4203,782,759 - 3,797,620 (-)RGD
Celera204,291,911 - 4,306,777 (+)RGD
Sequence:
RefSeq Acc Id: XM_039098802   ⟹   XP_038954730
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,719,089 - 3,733,830 (-)NCBI
RefSeq Acc Id: XM_039098803   ⟹   XP_038954731
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,720,163 - 3,733,947 (-)NCBI
RefSeq Acc Id: XM_039098804   ⟹   XP_038954732
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,721,717 - 3,733,947 (-)NCBI
RefSeq Acc Id: XR_005497276
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,720,214 - 3,733,947 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_997696   ⟸   NM_212531
- UniProtKB: Q6MG55 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071617   ⟸   ENSRNOT00000077082
RefSeq Acc Id: ENSRNOP00000069494   ⟸   ENSRNOT00000085611
RefSeq Acc Id: ENSRNOP00000070241   ⟸   ENSRNOT00000081760
RefSeq Acc Id: ENSRNOP00000071276   ⟸   ENSRNOT00000078576
RefSeq Acc Id: ENSRNOP00000068595   ⟸   ENSRNOT00000083411
RefSeq Acc Id: ENSRNOP00000073114   ⟸   ENSRNOT00000083284
RefSeq Acc Id: ENSRNOP00000072329   ⟸   ENSRNOT00000086950
RefSeq Acc Id: XP_038954730   ⟸   XM_039098802
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954731   ⟸   XM_039098803
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038954732   ⟸   XM_039098804
- Peptide Label: isoform X3
Protein Domains
AB hydrolase-1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MG55-F1-model_v2 AlphaFold Q6MG55 1-558 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701395
Promoter ID:EPDNEW_R11913
Type:initiation region
Name:Abhd16a_1
Description:abhydrolase domain containing 16A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,080,134 - 5,080,194EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303164 AgrOrtholog
BioCyc Gene G2FUF-4643 BioCyc
Ensembl Genes ENSRNOG00000056637 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000071617 ENTREZGENE
  ENSRNOP00000071617.2 UniProtKB/TrEMBL
  ENSRNOP00000073114 ENTREZGENE
  ENSRNOP00000073114.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000077082 ENTREZGENE
  ENSRNOT00000077082.2 UniProtKB/TrEMBL
  ENSRNOT00000083284 ENTREZGENE
  ENSRNOT00000083284.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7317323 IMAGE-MGC_LOAD
InterPro AB_hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AB_hydrolase_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABHD16A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361796 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108968 IMAGE-MGC_LOAD
NCBI Gene 361796 ENTREZGENE
PANTHER PTHR12277:SF54 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Abhydrolase_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Abhd16a PhenoGen
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K0X5_RAT UniProtKB/TrEMBL
  A0A0G2K4N8_RAT UniProtKB/TrEMBL
  ABHGA_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-13 Abhd16a  abhydrolase domain containing 16A, phospholipase  Abhd16a  abhydrolase domain containing 16A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-28 Abhd16a  abhydrolase domain containing 16A  Bat5  HLA-B associated transcript 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Bat5  HLA-B associated transcript 5      Symbol and Name status set to approved 1299863 APPROVED
2005-07-14 Bat5  HLA-B associated transcript 5      Symbol and Name status set to provisional 70820 PROVISIONAL