Aia1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Aia1 (Adjuvant induced arthritis QTL 1) Rattus norvegicus

Symbol: Aia1
Name: Adjuvant induced arthritis QTL 1
RGD ID: 61472
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 18.0
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,646,395 - 4,597,031RGD_MAPPER_PIPELINE
Rnor_6.0203,151,815 - 6,896,013RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0205,249,981 - 8,621,883RGDRnor5.0
RGSC_v3.4202,790,511 - 4,530,895RGDRGSC3.4
RGSC_v3.1202,790,738 - 4,531,120RGD
Cross Type: F2
Strains Crossed: DA F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA  (IEA)
F344/NRrrc  (IEA)

References

Related QTLs

Related QTL Description Reference
Oia1 interacts with RGD:61035
Pia1 interacts with RGD:61035
Coreg1 maps to same region RGD:69708
Ciaa1 interacts with RGD:61035
Cia1 interacts with RGD:61035


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1595920RT1-S2RT1 class Ib, locus S22031520733165871Rat
1595735Rps2-ps1ribosomal protein S2, pseudogene 12031594763160204Rat
3501RT1-O1RT1 class Ib, locus O12031605353162939Rat
1598370RT1-N3RT1 class Ib, locus N32031667933170945Rat
735037RT1-S3RT1 class Ib, locus S32031761243180825Rat
1598233RT1-T24-4RT1 class I, locus T24, gene 42031894573197457Rat
727839LOC360231MHC class I RT1.O type 149 processed pseudogene2031895013251252Rat
15944252361ex4-5class I gene fragment 23612031989173199266Rat
1594426Rpl41-ps1ribosomal protein L41, pseudogene 12032125383212922Rat
11408039LOC108349027uncharacterized LOC1083490272032231793241469Rat
1624211RT1-T24-3RT1 class I, locus T24, gene 32032260103257254Rat
7587957LOC102553017uncharacterized LOC1025530172032306373233280Rat
15944272331ex4-5class I gene fragment 23312032323143232838Rat
6501562LOC100909797RT1 class I histocompatibility antigen, AA alpha chain-like2032422363253995Rat
1303033RT1-T24-2RT1 class I, locus T24, gene 22032424923246976Rat
11378364LOC108353244uncharacterized LOC1083532442032524453265340Rat
15944282310ex4-5class I gene fragment 23102032534673253816Rat
9295123LOC103694375uncharacterized LOC1036943752032657573267512Rat
1359499RT1-T24-1RT1 class I, locus T24, gene 12032693153282523Rat
1303051Gnl1G protein nucleolar 12032905433299494Rat
1303270Prr3proline rich 32033002473307262Rat
7630098LOC102553244uncharacterized LOC1025532442033072063309848Rat
620286Abcf1ATP binding cassette subfamily F member 12033099143322828Rat
2325510Mir877microRNA 8772033188723318956Rat
620079Ppp1r10protein phosphatase 1, regulatory subunit 102033296773344286Rat
1302998Mrps18bmitochondrial ribosomal protein S18B2033448703350929Rat
1303066Atat1alpha tubulin acetyltransferase 12033512693364565Rat
11496145LOC108353245uncharacterized LOC1083532452033613343364251Rat
1302996RGD1302996hypothetical protein MGC:158542033647873368923Rat
1302963Dhx16DEAH-box helicase 162033689713386087Rat
1309543Ppp1r18protein phosphatase 1, regulatory subunit 182033724123397351Rat
7489035Mir6328microRNA 63282033948133394909Rat
1302966Nrmnurim2033978343402264Rat
1559468Mdc1mediator of DNA damage checkpoint 12034050173419831Rat
628596Tubb5tubulin, beta 5 class I2034224483426420Rat
70991Flot1flotillin 12034278903438418Rat
1303321Ier3immediate early response 32034387983440002Rat
7501082LOC102553445uncharacterized LOC1025534452034639813464880Rat
7678499LOC102553505uncharacterized LOC1025535052034725853483741Rat
2313830Cb707485hypothetical LOC1003107832035322023535176Rat
2252Ddr1discoidin domain receptor tyrosine kinase 12035534303574959Rat
1303309Gtf2h4general transcription factor 2H subunit 42035826883588373Rat
11370288LOC108349028uncharacterized LOC1083490282035844953584792Rat
1303122Vars2valyl-tRNA synthetase 2, mitochondrial2035884623599514Rat
1303180Sfta2surfactant associated 22036049183605643Rat
1303125Mucl3mucin like 32036119653619884Rat
1302953CB741658CB741658 gene2036305273633778Rat
2324335Mt1mmetallothionein 1M2036774603677838Rat
1562885RGD1562885similar to RIKEN cDNA 2300002M232036896083691164Rat
1598543Cdsncorneodesmosin2037046263707266Rat
1591981Psors1c2psoriasis susceptibility 1 candidate 22037278173728805Rat
1302992Cchcr1coiled-coil alpha-helical rod protein 12037309683745721Rat
1302974Tcf19transcription factor 192037404543746964Rat
1359491Pou5f1POU class 5 homeobox 12037472313751994Rat
1359403RT1-CE16RT1 class I, locus CE162037914123796550Rat
3576Ring1ring finger protein 12038122873815834Rat
2325545Mir219a1microRNA 219a-12038161583816267Rat
1303158Hsd17b8hydroxysteroid (17-beta) dehydrogenase 82038172123819316Rat
1593280Slc39a7solute carrier family 39 member 72038194163822788Rat
3611Rxrbretinoid X receptor beta2038226733829138Rat
2373Col11a2collagen type XI alpha 2 chain2038293243859022Rat
1595866RT1-Hb-ps1RT1 class II, locus Hb, pseudogene 12038663613870353Rat
1595921RT1-HaRT1 class II, locus Ha2038754783885140Rat
3477RT1-DOaRT1 class II, locus DOa2038891063892360Rat
11427433LOC108353246uncharacterized LOC1083532462039070943910797Rat
6502942LOC100909544bromodomain-containing protein 2-like2039105553918348Rat
1303324Brd2bromodomain containing 22039105553921074Rat
7718084LOC102554695uncharacterized LOC1025546952039174713921202Rat
9166882LOC103694376uncharacterized LOC1036943762039203923933778Rat
6502526LOC100909593class II histocompatibility antigen, M alpha chain-like2039355013938915Rat
735053RT1-DMaRT1 class II, locus DMa2039355123938915Rat
735096RT1-DMbRT1 class II, locus DMb2039453833952838Rat
6502739LOC100909630class II histocompatibility antigen, M beta 1 chain-like2039455643952839Rat
3427Psmb9proteasome 20S subunit beta 92039734243978845Rat
3817Tap1transporter 1, ATP binding cassette subfamily B member2039793023989669Rat
3426Psmb8proteasome 20S subunit beta 82039908093993772Rat
3818Tap2transporter 2, ATP binding cassette subfamily B member2039955444009587Rat
1595814RT1-DObRT1 class II, locus DOb2040202734026398Rat
7536082LOC102554184uncharacterized LOC1025541842040359014041409Rat
3469RT1-BbRT1 class II, locus Bb2040437264049367Rat
1595867RT1-BaRT1 class II, locus Ba2040661334070726Rat
1593282RT1-Db1RT1 class II, locus Db12040876214097190Rat
1595922RT1-Db2RT1 class II, locus Db22041061364126103Rat
1303212Arrb2-psarrestin, beta 2, pseudogene2041209824121959Rat
1593283RT1-DaRT1 class II, locus Da2041276444132616Rat
620731Btnl2butyrophilin-like 22041401844156365Rat
1303262Btnl3butyrophilin-like 32041568584171887Rat
11477629LOC108349035uncharacterized LOC1083490352041678784170539Rat
1597063Tsbp1testis expressed basic protein 12041786554235947Rat
9432021LOC103694377uncharacterized LOC1036943772042160094218865Rat
1598538Btn3a2butyrophilin, subfamily 3, member A22042402704247115Rat
1624210RGD1624210similar to butyrophilin-like 72042695264283089Rat
1303332Cyp21a1-pscytochrome P450, family 21, subfamily a, polypeptide 1, pseudogene2042829964299099Rat
1591983C4bcomplement C4B (Chido blood group)2043023444316752Rat
1588459Stk19-psserine/threonine kinase 19 pseudogene2043174404319946Rat
1359601Stk19serine/threonine kinase 192043174404517128Rat
1303282Notch4notch receptor 42043297944353868Rat
1303014Gpsm3G-protein signaling modulator 32043552464357107Rat
1303084Pbx2PBX homeobox 22043578054362730Rat
69258Ageradvanced glycosylation end product-specific receptor2043631524366079Rat
1588458Rnf5ring finger protein 52043662444368690Rat
1303287Agpat11-acylglycerol-3-phosphate O-acyltransferase 12043693994378272Rat
1549706Egfl8EGF-like-domain, multiple 82043782054380959Rat
620375Ppt2palmitoyl-protein thioesterase 22043814554401638Rat
1359348Prrt1proline-rich transmembrane protein 12043926054396271Rat
1303227FkbplFKBP prolyl isomerase like2044118904413360Rat
1303317Atf6bactivating transcription factor 6 beta2044142834422283Rat
7532345LOC102553942uncharacterized LOC1025539422044257324429373Rat
3887Tnxa-ps1tenascin XA, pseudogene 12044853164486671Rat
2461Cyp21a1cytochrome P450, family 21, subfamily a, polypeptide 12044862134489358Rat
1303267Dxodecapping exoribonuclease2045173074519391Rat
1303059Skiv2lSki2 like RNA helicase2045194574530177Rat
1303325Nelfenegative elongation factor complex member E2045303284536085Rat
2204Cfbcomplement factor B2045362064542073Rat
2231C2complement C22045423404561152Rat
7661101LOC102553878uncharacterized LOC1025538782045679244572791Rat
1302958Zbtb12zinc finger and BTB domain containing 122045721004574945Rat
1302972Ehmt2euchromatic histone lysine methyltransferase 22045760334592980Rat
1303167Slc44a4solute carrier family 44, member 42045933894609641Rat
9418860LOC103694378uncharacterized LOC1036943782046084104609426Rat
3163Neu1neuraminidase 12046109954615258Rat
1595869RT1-CE1RT1 class I, locus12046382354792390Rat
1594416Cdk2ap1-ps4Cdk2ap1-ps4 pseudogene2046471144648313Rat
1303017RT1-CE6RT1 class I, locus CE62046768514677801Rat
9219405LOC103694379uncharacterized LOC1036943792046796184682079Rat
11390979LOC108353247uncharacterized LOC1083532472046893974690988Rat
1595786RT1-CE7RT1 class I, locus CE72046957654698712Rat
1594418Sacm2l-ps4Sacm2l-ps4 pseudogene2047550114756151Rat
1598235RT1-CE2RT1 class I, locus CE22047719604774886Rat
1594423Sacm2l-ps3Sacm2l-ps3 pseudogene2047807584781217Rat
70923Ddx39bDExD-box helicase 39B2048061034818600Rat
1303186Atp6v1g2ATPase H+ transporting V1 subunit G22048212654824829Rat
1303310Nfkbil1NFKB inhibitor like 12048235904839202Rat
3020Ltalymphotoxin alpha2048518894854677Rat
7707260LOC102549726uncharacterized LOC1025497262048712644873982Rat
1593284Hspa1aheat shock protein family A (Hsp70) member 1A2048758344881751Rat
2840Hspa1bheat shock protein family A (Hsp70) member 1B2048776384880112Rat
1595925Hspa1lheat shock protein family A (Hsp70) member 1 like2048799984965191Rat
7571524LOC102549864uncharacterized LOC1025498642048922064893176Rat
1595868RT1-CE5RT1 class I, locus CE52048927024896993Rat
1594419LOC224733l-4LOC224733l-4 pseudogene2049007204901022Rat
1594411Cdk2ap1-ps5Cdk2ap1-ps5 pseudogene2049099104910056Rat
1598231RT1-CE3RT1 class I, locus CE32049180474943603Rat
1598234RT1-CE4RT1 class I, locus CE42049185234921339Rat
1594398Sacm2l-ps2Sacm2l-ps2 pseudogene2049238324924972Rat
1359103RT1-CE12RT1 class I, locus CE122049396214940253Rat
9255690LOC103694387heat shock 70 kDa protein 1A/1B-like2049571714958507Rat
1598536Lsm2LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated2049668174970567Rat
1590214Rpl13-ps1ribosomal protein L13, pseudogene 12049743324974574Rat
11436027LOC108349032uncharacterized LOC1083490322049831654990383Rat
3950Vars1valyl-tRNA synthetase 12049935395008259Rat
1303137Vwa7von Willebrand factor A domain containing 72050085085019040Rat
1359359Sapcd1suppressor APC domain containing 12050182645020375Rat
1303008Msh5mutS homolog 52050206905037125Rat
1303043Clic1chloride intracellular channel 12050403145049166Rat
1302955Ddah2dimethylarginine dimethylaminohydrolase 22050492605052573Rat
1303269Mpig6bmegakaryocyte and platelet inhibitory receptor G6b2050544195056655Rat
1302999Ly6g6clymphocyte antigen 6 family member G6C2050568515060398Rat
1303064Ly6g6dlymphocyte antigen 6 family member G6D2050618495064768Rat
1303112Ly6g6elymphocyte antigen 6 family member G6E2050631485069032Rat
1303333Ly6g6flymphocyte antigen 6 family member G6F2050710415076627Rat
1594424Rps25-ps2ribosomal protein S25, pseudogene 22050782275078681Rat
1303164Abhd16aabhydrolase domain containing 16A, phospholipase2050800705094935Rat
9356951LOC103694383uncharacterized LOC1036943832050833295084983Rat
735180Ly6g5clymphocyte antigen 6 family member G5C2051004155104631Rat
1303101Ly6g5blymphocyte antigen 6 family member G5B2051062485108604Rat
619978Csnk2bcasein kinase 2 beta2051086925113675Rat
1303304Gpank1G patch domain and ankyrin repeats 12051132325116382Rat
1303038G4G4 protein2051180065120332Rat
620773Apomapolipoprotein M2051204735123073Rat
71064Bag6BAG cochaperone 62051245125138084Rat
1303025Prrc2aproline-rich coiled-coil 2A2051398815155371Rat
1303199E230034O05RikE230034O05Rik gene2051555575157714Rat
61924Aif1allograft inflammatory factor 12051613505167176Rat
727881Ncr3natural cytotoxicity triggering receptor 32051701695175773Rat
620077Lst1leukocyte specific transcript 12051752135179352Rat
1303162Ltblymphotoxin beta2051846315186476Rat
3876Tnftumor necrosis factor2051893825192000Rat
9231102LOC103694388uncharacterized LOC1036943882052587395262421Rat
11400510LOC108353255uncharacterized LOC1083532552052690075272798Rat
2322333LOC100360320rCG64293-like2052895215298449Rat
1594409Sacm2l-ps5Sacm2l-ps5 pseudogene2053333875334540Rat
1594407Sacm2l-ps7Sacm2l-ps7 pseudogene2053348935335522Rat
1594406Cdk2ap1-ps6Cdk2ap1-ps6 pseudogene2053389055340102Rat
1594415LOC224733l-6LOC224733l-6 pseudogene2053450755345390Rat
7631662LOC102546968RT1 class I histocompatibility antigen, AA alpha chain-like2053472755350135Rat
1594413RT1-CE9-ps1RT1 class I, locus CE9, pseudogene 12053516135354630Rat
11374777LOC108353237class I histocompatibility antigen, Non-RT1.A alpha-1 chain-like2053516215354278Rat
1594399Sacm2l-ps1Sacm2l-ps1 pseudogene2053647465364806Rat
1594400LOC224733l-2LOC224733l-2 pseudogene2053709855371268Rat
1595923RT1-A2RT1 class Ia, locus A22053749905378536Rat
1591984Cdk2ap1-ps1Cdk2ap1-pseudogene 12053818725382222Rat
1594401LOC224733l-1LOC224733l-1 pseudogene2054028255410595Rat
1595924RT1-A1RT1 class Ia, locus A12054144635418012Rat
3618Vps52VPS52 subunit of GARP complex2054319975441736Rat
3595Rps18ribosomal protein S182054418755445553Rat
620328B3galt4Beta-1,3-galactosyltransferase 42054461045447679Rat
2209Wdr46WD repeat domain 462054478605455632Rat
1303006Pfdn6prefoldin subunit 62054559745457448Rat
1302985Rgl2ral guanine nucleotide dissociation stimulator-like 22054585095466853Rat
3819TapbpTAP binding protein2054680565476007Rat
1359627Zbtb22zinc finger and BTB domain containing 222054763455479900Rat
621227Daxxdeath-domain associated protein2054801035485962Rat
1303072AA926063AA926063gene2054864745498987Rat
11496771Smim40small integral membrane protein 402054886695489594Rat
9251702LOC103694389protein kish-A pseudogene2054907915491527Rat
1591985Sec61-psSec61 pseudogene2055009555501293Rat
1591986Rps25-ps1ribosomal protein S25, pseudogene 12055071115507778Rat
1359118Kifc1kinesin family member C12055090595526175Rat
1303205Phf1PHD finger protein 12055269265531940Rat
1303306CutacutA divalent cation tolerance homolog2055320245533640Rat
621090Syngap1synaptic Ras GTPase activating protein 12055354345564657Rat
1303050Zbtb9zinc finger and BTB domain containing 92055665175569535Rat
621635Bak1BCL2-antagonist/killer 12056096205618899Rat
9364288LOC103694384uncharacterized LOC1036943842056180945618720Rat
1359729Ggnbp1gametogenetin binding protein 12056189735625320Rat
2934Itpr3inositol 1,4,5-trisphosphate receptor, type 32056458945711702Rat
1306917Uqcc2ubiquinol-cytochrome c reductase complex assembly factor 22057122005723902Rat
1584104Ip6k3inositol hexakisphosphate kinase 32057334855754859Rat
1305341Lemd2LEM domain nuclear envelope protein 22057797425786213Rat
1592336Clpsl2colipase-like 22057915215794344Rat
2363Clpscolipase2058034475806107Rat
1359370Lhfpl5LHFPL tetraspan subfamily member 52058158375826137Rat
1308272Srpk1SRSF protein kinase 12058294125865877Rat
1308898Slc26a8solute carrier family 26 member 82058707145933151Rat
70496Mapk14mitogen activated protein kinase 142059332905995137Rat
7588778LOC102555910uncharacterized LOC1025559102059779435979905Rat
3045Mapk13mitogen activated protein kinase 132060183746027467Rat
1306868Brpf3bromodomain and PHD finger containing, 32060478006086099Rat
1306685Pnpla1patatin-like phospholipase domain containing 12061010616143762Rat
1591066Bnip5BCL2 interacting protein 52061508116164148Rat
2321717Pxt1peroxisomal testis enriched protein 12061924406197228Rat
1309887Kctd20potassium channel tetramerization domain containing 202062058976222818Rat
1309455Stk38serine/threonine kinase 382062243006257613Rat
1309233Srsf3serine and arginine rich splicing factor 32062882856298218Rat
69328Cdkn1acyclin-dependent kinase inhibitor 1A2063484226358864Rat
1560150Rab44RAB44, member RAS oncogene family2063638396410878Rat
6497687LOC100910615allatostatin-A receptor-like2064167416418398Rat
1308021Cpne5copine 52064190336500843Rat
7613542LOC102547155uncharacterized LOC1025471552065047766508900Rat
1309119Ppil1peptidylprolyl isomerase like 12065156386864571Rat
11396817LOC108353257uncharacterized LOC1083532572065343546536797Rat
9415510LOC103694385LEM domain-containing protein 2-like2065579686558996Rat
7627017LOC102551672uncharacterized LOC1025516722065652076576825Rat
1642907Mlnmotilin2065670926571791Rat
7574070LOC102551729uncharacterized LOC1025517292065818496593913Rat
7558298LOC102551791uncharacterized LOC1025517912065994406602646Rat
11371581LOC108349038uncharacterized LOC1083490382067105126714137Rat
2745Grm4glutamate metabotropic receptor 42067456826791521Rat
11440932LOC108353256uncharacterized LOC1083532562068310186833968Rat
735065RGD735065similar to GI:13385412-like protein splice form I2068698706910022Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
11206D20Arb21642031719113172069Ratregion
11206D20Arb21642031518153151975Ratregion
11207D20Wox52592031643153164577Ratregion
11208D20Mgh32462049316924931821Ratregion
11208D20Mgh32462046383904638523Ratregion
11209D20Wox42412049316974931821Ratregion
11209D20Wox42412046383954638523Ratregion
34280D20Mgh41062058753395875448Ratregion
34749D20UW11522051922205192361Ratregion
34749D20UW11522048554684855609Ratregion
11428D20Wox31152051922405192354Ratregion
11428D20Wox31152048554754855589Ratregion
37594D20Rat411952040391134039317Ratregion
35593D20Rat171722046673554667514Ratregion
38324D20Rat321602038059113806082Ratregion
38826D20Rat421412041861044186246Ratregion
41466D20Rat451252065674196567533Ratregion
41562D20Rat461682034021113402252Ratregion
43140D20Rat712322033931913393415Ratregion
43141D20Rat662022039703233970497Ratregion
45668D20Got21272036014343601560Ratregion
45669D20Got41742050380275038199Ratregion
66471D20Uia11402041970854197224Ratregion
1576369D20Ztm21592056156065615764Ratregion
1576378D20Ztm11742051922385192411Ratregion
1576378D20Ztm11742048554184855591Ratregion
1630310D20Got1021622043676944367855Ratregion
1626730D20Rhw111862040363584036543Ratregion
1626758D20Rhw122222056020325602253Ratregion
1626764D20Rhw91812040413434041523Ratregion
1626768D20Rhw131522057298765730027Ratregion
1626778D20Rhw101662040391134039278Ratregion
1639768D20Wox122032048814914881693Ratregion
1633553D20Wox152031719233172044Ratregion
1633553D20Wox152031518273151950Ratregion
1637010D20Got1031442068461916846334Ratregion
2303197D20Yum621502043865434386692Ratregion
2303199D20Yum581702045139674514136Ratregion
2303203D20Yum512212050797245079944Ratregion
2303205D20Yum711522042224564222607Ratregion
2303207D20Yum571792045466564546834Ratregion
2303209D20Yum761052052429765243080Ratregion
2303209D20Yum761052039368103936914Ratregion
2303211D20Yum611662044136284413793Ratregion
2303213D20Yum361562034343933434548Ratregion
2303213D20Yum361562034339983434548Ratregion
2303215D20Yum651062042725944272699Ratregion
2303219D20Yum551612046150564615216Ratregion
2303225D20Yum631572043426404342796Ratregion
2303227D20Yum781522052858405285991Ratregion
2303227D20Yum781522038779463878097Ratregion
2303233D20Yum501552051112745111428Ratregion
2303235D20Yum371862034880953488280Ratregion
2303237D20Yum842392031666363166874Ratregion
2303239D20Yum591742044819564482129Ratregion
2303243D20Yum821512054395205439670Ratregion
2303247D20Yum311792031934423193620Ratregion
2303249D20Yum641542043124744312627Ratregion
2303251D20Yum381512035158953516045Ratregion
2303253D20Yum602044557804456040Ratregion
2303253D20Yum602044557804455921Ratregion
2303255D20Yum411672036549973655163Ratregion
2303255D20Yum411672036496783649848Ratregion
2303265D20Yum472272048096964809922Ratregion
2303267D20Yum402372036191823619418Ratregion
2303269D20Yum741622040693034069464Ratregion
2303271D20Yum422452036844663684710Ratregion
2303273D20Yum702272042361374236363Ratregion
2303275D20Yum491852051665005166684Ratregion
2303281D20Yum341662033146393314804Ratregion
2303287D20Yum481922051869935187184Ratregion
2303287D20Yum481922048606454860836Ratregion
2303289D20Yum522232050637095063931Ratregion
2303291D20Yum791582038501433850300Ratregion
2303293D20Yum331632032742353274397Ratregion
2303297D20Yum751832040195424019724Ratregion
2303299D20Yum531972049772344977430Ratregion
2303301D20Yum391672035686353568801Ratregion
2303307D20Yum731142041235224123635Ratregion
2303307D20Yum731142041232754123635Ratregion
2303309D20Yum721692041525754152743Ratregion
7206058Tubb52012034255993425799Ratregion
7387255rs81536182048574234857423Ratregion
7206082Pou5f13472037486253748971Ratregion
7206734MARC_5897-5898:997299407:12592038273943827941Ratregion
5035945PMC316389P14192063564596356877Ratregion
5036009PMC85267P13682063480916348458Ratregion
5036051Zfp2974542054772405477693Ratregion
5036063203J18-Sp61592065170336517191Ratregion
5036189D17Dgm21952040453034045497Ratregion
5036334H2-D11562054176035417758Ratregion
5039134RH1275322032053367495336951Ratregion
5031244PMC112151P14702051904825190951Ratregion
5031244PMC112151P14702048568784857347Ratregion
5031256PMC116546P11712051903105190480Ratregion
5031256PMC116546P11712048573494857519Ratregion
5033919RH1406161842065928286593011Ratregion
5025988RH1304731512041276464127796Ratregion
5028591AI3260742072050942785094484Ratregion
7205922UniSTS:4634054202038575073858380Ratregion
5028753RH1421991832039790363979218Ratregion
5034400BE1170581502033622363362385Ratregion
5034450AA9003791862051370455137635Ratregion
5034480BG3725722062050208765021388Ratregion
5034660BF3908041852043774184377602Ratregion
5026672RH1330972142040497124049925Ratregion
5029529Bat1_microsatellite1412048063154806461Ratregion
5032479D17Ertd710e2252045927414592965Ratregion
5029743BI2844841902032333943233583Ratregion
5027519AI255840982045363184536415Ratregion
5032973RH1371622322054307825431016Ratregion
5030335AI1132372152051933185193532Ratregion
5030335AI1132372152048542974854511Ratregion
5025150C76158892033403293340424Ratregion
5025356RH1279991942049702654970458Ratregion
5033427RH1387921462044131434413288Ratregion
5033455RH1388961202050863815086500Ratregion
5025468RH1284352202033296823329893Ratregion
5028191D17Mit1012132068690476869259Ratregion
5033661RH1396421882054472625447449Ratregion
5030981BF4053041642031829743183144Ratregion
5031159BI2987341542032697183269871Ratregion
5031159BI2987341542031899943190147Ratregion
5051911RH947291752051896365189813Ratregion
5051911RH947291752048580164858193Ratregion
5052061RH948173302051909875191316Ratregion
5052061RH948173302048565134856842Ratregion
5051276RH1345401812050075455008245Ratregion
5051913RH947301452051922185192352Ratregion
5051913RH947301452048554774855611Ratregion
5057247AA9260632152054865105486724Ratregion
5055647RH1439211712049214064921575Ratregion
5055647RH1439211712046987794698948Ratregion
5058600BI2843062062043776384377843Ratregion
5058656BE1022691692056185515618719Ratregion
5056361RH1443342602048061874806554Ratregion
5056515RH1444232712059441845944454Ratregion
5052549AI450394942033726613372754Ratregion
5058954BF3938581402038151033815242Ratregion
5058200BI2777091972054924285492624Ratregion
5053205RH1425141002050326135032712Ratregion
5058492AW5238911012031573843157484Ratregion
5057844BF3862482032065365646536766Ratregion
5057844BF3862482032057709335771135Ratregion
5049826RH1337042142050946335094893Ratregion
5049906RH1337501912043662454366435Ratregion
7193040Rxrb02038248233825296Ratregion
5050382RH1340241802056096345609813Ratregion
5051671Rxrb2882038253723827071Ratregion
5051715RH94616902044865434486632Ratregion
5051104RH1344421992059916115991809Ratregion
5041592RH1289461852048774754877659Ratregion
5041670RH1289912102039734853973694Ratregion
5041828RH1290821692034279363428104Ratregion
5044042RH1303761802062979256298104Ratregion
5040910RH1285541802055692695569448Ratregion
5044600RH1306972172054765395476755Ratregion
5041594RH1289472052055317135531915Ratregion
5041598RH1289491802054886815488860Ratregion
5044010RH1303582002063586406358839Ratregion
5045602RH1312721872065086866508872Ratregion
5046034RH1315202132032334473233659Ratregion
5046070RH1315411812037047173704897Ratregion
5041826RH1290811632050182895018451Ratregion
5044844RH1308362072045363804536909Ratregion
5048724RH1330692012043568384357038Ratregion
5046292RH1316681942033686343368827Ratregion
5047544RH1323881832052271445227326Ratregion
5047544RH1323881832039525653952747Ratregion
5046166RH1315962182049559624956179Ratregion
5047646RH1324471802037275173727696Ratregion
5049182RH1333331942038173023817495Ratregion
5046662RH1318821502043960754396224Ratregion
5046728RH1319201832034388693439051Ratregion
5049232RH1333611902034032883403477Ratregion
5048160RH1327432192032906923291174Ratregion
5046938RH13204102036050193605360Ratregion
5048212RH1327731532052140275215221Ratregion
5048212RH1327731532039925303993724Ratregion
5047106RH1321371972051160995116295Ratregion
5047366RH1322861922064103256410516Ratregion
5048384RH1328721962051752395175537Ratregion
5039768RH1278961822068653756865556Ratregion
5042584RH1295232102062225396222748Ratregion
5048576RH132983982031848183184915Ratregion
5049522RH1335291532040491704049322Ratregion
5049578RH13356102046902424690423Ratregion
5040020RH1280431812033506513350831Ratregion
5040094RH1280852132050523165052528Ratregion
5042648RH1295601892057114375711625Ratregion
5042660RH1295672122057113635711574Ratregion
5039338RH1276491822034256343425815Ratregion
5039362RH1276622102051861655186374Ratregion
5039362RH1276622102048614554861664Ratregion
5040482RH1283091832058312315831419Ratregion
5040506RH1283231922045195154519706Ratregion
5039930RH1279892142058296185829831Ratregion
5042260RH1293321872038194403819626Ratregion
5042402RH1294132052054669645467168Ratregion
5040746RH1284591892033224813322669Ratregion
5040886RH1285402092037466763746884Ratregion
5043344RH1299721902051087235108912Ratregion
5043582RH13010802054307375430936Ratregion
7192235D20Wox122042048814914881694Ratregion
5043810RH1302401902062245096224698Ratregion
5072730RH1370201892058259065826094Ratregion
5072778RH1370481862051087225108907Ratregion
5071940RH1353732052051613835162109Ratregion
5072084RH1366422152054032685403482Ratregion
5074022RH1377741552054887045488858Ratregion
5075544RH1386551712051894795189650Ratregion
5075544RH1386551712048581794858350Ratregion
5072552RH1369152162052409935241208Ratregion
5072552RH1369152162039386823938897Ratregion
5076652RH1393001602065451076545266Ratregion
5076652RH1393001602057797665779925Ratregion
5076798RH1393842042043782294378432Ratregion
5074808RH1382301212067488356748955Ratregion
5077632RH1398681912039893753989565Ratregion
5077722RH1399202152050530105053224Ratregion
5077736RH1399281872033985253398711Ratregion
5076822RH1393982272039893873989613Ratregion
5075694RH1387421372054675365467672Ratregion
5076288RH1390891892043525174352891Ratregion
5077912RH1400322152061432466143460Ratregion
5077912RH1400322152061351426135356Ratregion
5077998RH1400822102033175573317766Ratregion
5078590RH1404321682061434496143616Ratregion
5078590RH1404321682061353456135512Ratregion
5079980RH1413132062054319985432203Ratregion
5080028RH1413412172059948685995084Ratregion
5078186RH1401931942046148634615056Ratregion
5078264RH1402392162031702693170483Ratregion
5078896RH1406141912054585405458730Ratregion
5079300RH1409011512034278903428040Ratregion
5070974RH1348141842044864004486583Ratregion
5073334RH1373761502033072493307398Ratregion
5080420RH1415691802053375135337692Ratregion
5080420RH1415691802046497154649894Ratregion
5078672RH1404821322043817364381867Ratregion
5078716RH1405092222054472285447449Ratregion
5071400RH1350601922050687045068895Ratregion
5070728RH1346702102060281066028315Ratregion
5071660RH1352112142043778324378045Ratregion
5071484RH1351092022062215656221766Ratregion
5071568RH1351571812062398616240041Ratregion
5066704AU0482001262040296604029787Ratregion
5070135RH94492952039734813973575Ratregion
5070201RH945301872048774404877626Ratregion
5070211RH94536892038919033891991Ratregion
5070514D17Ertd808e2472033296973329938Ratregion
5060654BE1041851042054481165448219Ratregion
5060676BE0988921722051249205125092Ratregion
5062480BE1067281572054684985468654Ratregion
5063988BE1203831532058393135839465Ratregion
5062800AW5345051512056099765610126Ratregion
5065894AA9979091322048390374839168Ratregion
5065438BE1154942122044220164422227Ratregion
5060532BE1102981582064239946424415Ratregion
5064018BI2960251602057414345741593Ratregion
5065842AI0455032142058034935804085Ratregion
5062646BF403662922064028026402893Ratregion
5062728AW5341061762057367035736878Ratregion
5066056BF4132352012044363074436507Ratregion
5061146BI2930461612037310943731254Ratregion
5062936BE1134821512043333994333549Ratregion
5066352PMC162222P19282043638174364744Ratregion
5064956BF4053322002043890574389592Ratregion
5087138BQ1943501662048988334898998Ratregion
5082653BE1199391692043665614366729Ratregion
5087560PMC314357P14892048787454879233Ratregion
5087785D17Dgm5752039757023975776Ratregion
5087914H2-Q63612054148205415361Ratregion
5082835BF3902031652054745345474698Ratregion
5087518PMC26794P36722051902815190952Ratregion
5087518PMC26794P36722048568774857548Ratregion
5087530PMC275467P44792057105575711035Ratregion
5083787AI5995271982056382765638473Ratregion
5088853AU0488091972040363134036509Ratregion
5084460AI1768041012043623854362485Ratregion
5084572AI0139412282044258784426105Ratregion
5084720AI0082581242055655775565700Ratregion
5087626PMC85267P24202063489716349390Ratregion
5081823BI2737851742034256343425807Ratregion
5084930AI2367511222033981653398286Ratregion
5080926RH1418631892064204656420653Ratregion
5080934RH1418682082054326065432812Ratregion
5085493AI5480471642033643363364499Ratregion
5081384AI4539612092043657174366011Ratregion
5081234RH1420432062051200695120274Ratregion
5086553BM3858171882038214183821605Ratregion
5081613BE1176321652062972076297371Ratregion
5085689BM3834641752053463625346535Ratregion
5084022AI2324781342054314475431580Ratregion
5503258UniSTS:2376241832054763845476566Ratregion
5503262UniSTS:2376262382038288433829080Ratregion
5503354CGCb741762052656485265821Ratregion
5503354CGCb741762039140713914244Ratregion
5503520H2-Ke610272038175983818624Ratregion
5503522UniSTS:46341511942055189645520157Ratregion
5503524Slc39a712342038196123820845Ratregion
5503528UniSTS:46343714872054347485436234Ratregion
5507585Aif102051622025162960Ratregion
5503560UniSTS:46395902051902175191147Ratregion
5503560UniSTS:46395902048566824857612Ratregion
5503648UniSTS:4654675612043519934352553Ratregion
5504522PMC26660P43182034252493425566Ratregion
5504578PMC307617P22172063565896356805Ratregion
5505126H2-T234392031765923177806Ratregion
5505982UniSTS:4967391022034393613439462Ratregion
5506310Tap214532051993115200763Ratregion
5506310Tap214532040069894008441Ratregion
5506169UniSTS:4985067482050680965068843Ratregion
5506207Pou5f11772037474803747656Ratregion
5506231Clic11552050488535049007Ratregion
5499635MARC_5887-5888:991939775:17322043589264359657Ratregion
5500011UniSTS:2361251432055202945520557Ratregion
5499619MARC_3347-3348:991937077:11952051088955109960Ratregion
5499653MARC_6551-6552:992007295:16232035861403586762Ratregion
5500469RH12686602051336695134205Ratregion
5500507RH12688102048061554806520Ratregion
5503264UniSTS:2376302142044130714413284Ratregion
5501037PMC125030P13812063565136356893Ratregion
5501047PMC126110P12042063567186357503Ratregion
5501143PMC149170P14462063565446357571Ratregion
5500999PMC114802P23802063565146356893Ratregion
5501516RH358712462051357345136186Ratregion
5501760MARC_11957-11958:1003854518:15572051504725151028Ratregion
5501728UniSTS:2670092022034255273425728Ratregion
5506624SFRS3_18756122062966896297300Ratregion
5502146MARC_5857-5858:997299374:102051621925162779Ratregion
5502150MARC_6301-6302:997299518:102038276063828173Ratregion
5502124MARC_5045-5046:996690083:15632051408385141400Ratregion
5502132MARC_5411-5412:996690356:11742051370625137640Ratregion
5502299RH1243321632043816114381773Ratregion
Position Markers

Flank 1: (D20Arb2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,666,495 - 2,666,654 (+)MAPPER
mRatBN7.2202,646,395 - 2,646,556 (+)MAPPER
Rnor_6.0203,151,815 - 3,151,975NCBI
Rnor_6.0203,171,911 - 3,172,069NCBI
Rnor_5.0205,270,077 - 5,270,235UniSTS
Rnor_5.0205,249,981 - 5,250,141UniSTS
RGSC_v3.4202,790,512 - 2,790,672UniSTS
RGSC_v3.4202,811,408 - 2,811,567RGD
RGSC_v3.4202,790,511 - 2,790,672RGD
RGSC_v3.4202,811,409 - 2,811,567UniSTS
RGSC_v3.1202,790,738 - 2,790,899RGD
Celera2076,870 - 77,030UniSTS
Celera2096,911 - 97,069UniSTS
SHRSP x BN Map200.0RGD
SHRSP x BN Map200.0UniSTS
FHH x ACI Map200.16RGD
Peak: (D20Wox3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,621,656 - 3,621,771 (+)MAPPER
mRatBN7.2203,621,656 - 3,621,771 (-)MAPPER
Rnor_6.0205,192,240 - 5,192,354NCBI
Rnor_6.0204,855,475 - 4,855,589NCBI
Rnor_5.0206,935,875 - 6,935,989UniSTS
RGSC_v3.4203,660,646 - 3,660,760UniSTS
RGSC_v3.1203,660,872 - 3,660,987RGD
Celera204,403,718 - 4,403,832UniSTS
Cytogenetic Map20p12UniSTS
Flank 2: (D20Arb8)
Rat AssemblyChrPosition (strand)Source
Cytogenetic Map20 RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2015192000Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124652101Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125653396Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20126305996Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20126305996Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20127357423Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20128375393Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20128375393Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20128375393Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20128375393Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20128375393Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20133300419Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20137550487Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20137550487Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20201865447018654Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2020187706567419Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20299970747999707Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2031518156896013Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2031518156896013Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20340211127968216Rat
7175096Tcs1T cell selection QTL 1T cell selectionexpression2039105555533640Rat
7175099Tcs2T cell selection QTL 2T cell selectionexpression2039453834156365Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2040391135875448Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20403911318872273Rat
4889857Pur27Proteinuria QTL 2712.20.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20403911318872273Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2040393174855475Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)20410895649108956Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2048554689899946Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RChigh CD8 T cell count to CD45RClow CD8 T cell count ratio (CMO:0001990)20485546810800530Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20485547515050565Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20587544818739210Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Aia1

RGD Curation Notes
Note Type Note Reference
qtl_gene 396 known and 70 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_gene whole genome analysis using PGMapper revealed Tnf, Mif, Tap2, Tap1, Hla-dma, Hla-dmb and Nfkbil1 as RA associated genes and Tnf, Mif, Tap2, Tap1, Hla-dma, Hla-dmb and Nfkbil1 as RA associated polymorphism either in coding or regulatory region 2300074