Fam241b (family with sequence similarity 241 member B) - Rat Genome Database

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Gene: Fam241b (family with sequence similarity 241 member B) Rattus norvegicus
Analyze
Symbol: Fam241b
Name: family with sequence similarity 241 member B
RGD ID: 1305587
Description: Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human FAM241B (family with sequence similarity 241 member B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC294499; LOC294499; RGD1305587; similar to RIKEN cDNA 2010107G23; uncharacterized protein C10orf35 homolog; uncharacterized protein LOC294499
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Fam241b-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22030,052,315 - 30,055,247 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,052,324 - 30,055,084 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2031,063,279 - 31,066,040 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02030,454,175 - 30,456,935 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02031,196,962 - 31,199,725 (-)NCBIRnor_WKY
Rnor_6.02031,734,297 - 31,736,115 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,734,183 - 31,736,212 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02033,529,900 - 33,531,718 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,495,045 - 29,497,738 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12029,508,844 - 29,533,928 (-)NCBI
Celera2031,475,962 - 31,478,723 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Fam241b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22030,052,315 - 30,055,247 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,052,324 - 30,055,084 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2031,063,279 - 31,066,040 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02030,454,175 - 30,456,935 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02031,196,962 - 31,199,725 (-)NCBIRnor_WKY
Rnor_6.02031,734,297 - 31,736,115 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,734,183 - 31,736,212 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02033,529,900 - 33,531,718 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,495,045 - 29,497,738 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12029,508,844 - 29,533,928 (-)NCBI
Celera2031,475,962 - 31,478,723 (-)NCBICelera
Cytogenetic Map20q11NCBI
FAM241B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381069,630,247 - 69,633,596 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1069,630,247 - 69,633,596 (+)EnsemblGRCh38hg38GRCh38
GRCh371071,390,003 - 71,393,352 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361071,060,009 - 71,063,361 (+)NCBINCBI36Build 36hg18NCBI36
Build 341071,060,019 - 71,063,353NCBI
Celera1064,666,901 - 64,670,261 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1065,379,813 - 65,383,171 (+)NCBIHuRef
CHM1_11071,671,746 - 71,675,098 (+)NCBICHM1_1
T2T-CHM13v2.01070,498,296 - 70,501,645 (+)NCBIT2T-CHM13v2.0
Fam241b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391061,943,435 - 61,946,829 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1061,943,434 - 61,979,699 (-)EnsemblGRCm39 Ensembl
GRCm381062,107,656 - 62,111,050 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,107,655 - 62,143,920 (-)EnsemblGRCm38mm10GRCm38
MGSCv371061,570,404 - 61,573,761 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361061,503,013 - 61,506,370 (-)NCBIMGSCv36mm8
Celera1063,210,169 - 63,213,526 (-)NCBICelera
Cytogenetic Map10B4NCBI
Fam241b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543721,526,944 - 21,578,912 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543721,526,944 - 21,529,611 (-)NCBIChiLan1.0ChiLan1.0
FAM241B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11068,631,970 - 68,635,276 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1068,632,184 - 68,635,276 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01066,101,063 - 66,104,500 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FAM241B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,695,582 - 20,698,578 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha420,825,191 - 20,828,202 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0420,967,159 - 20,970,191 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl420,967,194 - 20,970,191 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1420,866,397 - 20,869,408 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0421,070,940 - 21,073,951 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0421,414,920 - 21,417,934 (+)NCBIUU_Cfam_GSD_1.0
Fam241b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721360,387,537 - 60,390,371 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365218,880,262 - 8,883,090 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM241B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11472,558,826 - 72,646,748 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FAM241B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1961,675,173 - 61,678,573 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl961,675,710 - 61,677,024 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604822,414,789 - 22,418,189 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam241b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247543,817,019 - 3,880,056 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247543,877,248 - 3,879,984 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH130131  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2622,183,906 - 22,184,110 (-)MAPPERmRatBN7.2
mRatBN7.22030,052,438 - 30,052,636 (+)MAPPERmRatBN7.2
Rnor_6.02031,734,414 - 31,734,611NCBIRnor6.0
Rnor_6.0624,562,376 - 24,562,579NCBIRnor6.0
Rnor_5.02033,530,017 - 33,530,214UniSTSRnor5.0
Rnor_5.0634,412,734 - 34,412,937UniSTSRnor5.0
RGSC_v3.4622,241,870 - 22,242,073UniSTSRGSC3.4
RGSC_v3.42029,495,162 - 29,495,359UniSTSRGSC3.4
Celera2031,476,079 - 31,476,276UniSTS
Celera621,724,327 - 21,724,530UniSTS
Cytogenetic Map20q11UniSTS
BF415334  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22030,051,934 - 30,052,069 (+)MAPPERmRatBN7.2
Rnor_6.02031,733,910 - 31,734,044NCBIRnor6.0
Rnor_5.02033,529,513 - 33,529,647UniSTSRnor5.0
RGSC_v3.42029,494,658 - 29,494,792UniSTSRGSC3.4
Celera2031,475,575 - 31,475,709UniSTS
RH 3.4 Map6651.4UniSTS
Cytogenetic Map20q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:118
Count of miRNA genes:93
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000000662
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 29 12 29 68 29 22 10
Low 43 21 12 7 12 8 10 6 6 19 1 8
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000000662   ⟹   ENSRNOP00000000662
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2030,052,324 - 30,055,084 (-)Ensembl
Rnor_6.0 Ensembl2031,734,183 - 31,736,212 (-)Ensembl
RefSeq Acc Id: NM_001127452   ⟹   NP_001120924
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22030,052,322 - 30,055,084 (-)NCBI
Rnor_6.02031,734,297 - 31,736,115 (-)NCBI
Rnor_5.02033,529,900 - 33,531,718 (-)NCBI
RGSC_v3.42029,495,045 - 29,497,738 (-)RGD
Celera2031,475,962 - 31,478,723 (-)RGD
Sequence:
RefSeq Acc Id: XM_039098607   ⟹   XP_038954535
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22030,052,315 - 30,055,247 (-)NCBI
RefSeq Acc Id: XM_039098609   ⟹   XP_038954537
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22030,052,315 - 30,055,090 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001120924   ⟸   NM_001127452
- UniProtKB: B0BMZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000000662   ⟸   ENSRNOT00000000662
RefSeq Acc Id: XP_038954535   ⟸   XM_039098607
- Peptide Label: isoform X1
- UniProtKB: B0BMZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954537   ⟸   XM_039098609
- Peptide Label: isoform X1
- UniProtKB: B0BMZ1 (UniProtKB/TrEMBL)
Protein Domains
DUF4605

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BMZ1-F1-model_v2 AlphaFold B0BMZ1 1-120 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305587 AgrOrtholog
BioCyc Gene G2FUF-3703 BioCyc
Ensembl Genes ENSRNOG00000000551 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000000662 ENTREZGENE
  ENSRNOP00000000662.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000662 ENTREZGENE
  ENSRNOT00000000662.8 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7389133 IMAGE-MGC_LOAD
InterPro DUF4605 UniProtKB/TrEMBL
KEGG Report rno:294499 UniProtKB/TrEMBL
MGC_CLONE MGC:187501 IMAGE-MGC_LOAD
NCBI Gene 294499 ENTREZGENE
Pfam DUF4605 UniProtKB/TrEMBL
PhenoGen Fam241b PhenoGen
UniProt B0BMZ1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-18 Fam241b  family with sequence similarity 241 member B  RGD1305587  similar to RIKEN cDNA 2010107G23  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 RGD1305587  similar to RIKEN cDNA 2010107G23  LOC679430  hypothetical protein LOC679430  Data Merged 1643240 APPROVED
2008-04-30 RGD1305587  similar to RIKEN cDNA 2010107G23   RGD1305587_predicted  similar to RIKEN cDNA 2010107G23 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC679430  hypothetical protein LOC679430      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1305587_predicted  similar to RIKEN cDNA 2010107G23 (predicted)  LOC294499_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC294499_predicted  similar to RIKEN cDNA 2010107G23 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL