Ehmt2 (euchromatic histone lysine methyltransferase 2) - Rat Genome Database

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Gene: Ehmt2 (euchromatic histone lysine methyltransferase 2) Rattus norvegicus
Analyze
Symbol: Ehmt2
Name: euchromatic histone lysine methyltransferase 2
RGD ID: 1302972
Description: Predicted to have several functions, including C2H2 zinc finger domain binding activity; RNA polymerase II transcription corepressor binding activity; and histone-lysine N-methyltransferase activity. Involved in several processes, including long-term memory; regulation of histone methylation; and response to fungicide. Localizes to nucleus. Human ortholog(s) of this gene implicated in idiopathic pulmonary fibrosis. Orthologous to human EHMT2 (euchromatic histone lysine methyltransferase 2); PARTICIPATES IN histone modification pathway; lysine degradation pathway; INTERACTS WITH 2,6-dinitrotoluene; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Bat8; euchromatic histone lysine N-methyltransferase 2; euchromatic histone-lysine N-methyltransferase 2; G9a; histone-lysine N-methyltransferase EHMT2; histone-lysine N-methyltransferase, H3 lysine-9 specific 3; HLA-B associated transcript 8, rat orthologue; Ng36
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,919,623 - 3,936,751 (-)NCBI
Rnor_6.0 Ensembl204,576,057 - 4,592,980 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0204,576,033 - 4,592,980 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0206,656,049 - 6,672,967 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,021,679 - 4,033,709 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1204,021,905 - 4,033,936 (-)NCBI
Celera204,093,733 - 4,109,892 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO)
nuclear speck  (IEA,ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (IDA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Anderson AM, etal., PLoS One. 2012;7(4):e34158. doi: 10.1371/journal.pone.0034158. Epub 2012 Apr 4.
2. Bekdash RA, etal., Alcohol Clin Exp Res. 2013 Jul;37(7):1133-42. doi: 10.1111/acer.12082. Epub 2013 Feb 15.
3. Black JC, etal., Mol Cell. 2012 Nov 30;48(4):491-507. doi: 10.1016/j.molcel.2012.11.006.
4. Chen MW, etal., Cancer Res. 2010 Oct 15;70(20):7830-40. doi: 10.1158/0008-5472.CAN-10-0833. Epub 2010 Oct 12.
5. Coward WR, etal., FASEB J. 2014 Jul;28(7):3183-96. doi: 10.1096/fj.13-241760. Epub 2014 Mar 20.
6. Davison JM, etal., J Biol Chem. 2009 Jan 23;284(4):1982-9. doi: 10.1074/jbc.M807651200. Epub 2008 Nov 10.
7. de Vogel S, etal., Cancer Epidemiol Biomarkers Prev. 2009 Nov;18(11):3086-96. doi: 10.1158/1055-9965.EPI-09-0289. Epub 2009 Oct 20.
8. Gupta-Agarwal S, etal., J Neurosci. 2012 Apr 18;32(16):5440-53. doi: 10.1523/JNEUROSCI.0147-12.2012.
9. Lehnertz B, etal., Genes Dev. 2014 Feb 15;28(4):317-27. doi: 10.1101/gad.236794.113.
10. MGD data from the GO Consortium
11. Miura S, etal., Am J Dermatopathol. 2014 Mar;36(3):211-6. doi: 10.1097/DAD.0b013e3182964e02.
12. Patel DJ and Wang Z, Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
13. Pipeline to import KEGG annotations from KEGG into RGD
14. RGD automated data pipeline
15. RGD automated import pipeline for gene-chemical interactions
16. Xin Z, etal., J Biol Chem 2003 Apr 25;278(17):14996-5000. Epub 2003 Feb 13.
17. Zhao M, etal., Br J Dermatol. 2012 Feb;166(2):226-73. doi: 10.1111/j.1365-2133.2011.10646.x. Epub 2012 Jan 9.
18. Zhong X, etal., Histopathology. 2014 May 7. doi: 10.1111/his.12456.
19. Zimmermann N, etal., Biochem J. 2012 Nov 15;448(1):93-102. doi: 10.1042/BJ20120674.
Additional References at PubMed
PMID:15493016   PMID:15774718   PMID:15788566   PMID:16702210   PMID:17212651   PMID:17392792   PMID:17599069   PMID:17707230   PMID:18818694   PMID:19144645   PMID:20118233   PMID:21402781  
PMID:22387026   PMID:22770845   PMID:23918802   PMID:24584053   PMID:25607239   PMID:26917724   PMID:27893464   PMID:27932493   PMID:28665013   PMID:29217682   PMID:30587852  


Genomics

Comparative Map Data
Ehmt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,919,623 - 3,936,751 (-)NCBI
Rnor_6.0 Ensembl204,576,057 - 4,592,980 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0204,576,033 - 4,592,980 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0206,656,049 - 6,672,967 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,021,679 - 4,033,709 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1204,021,905 - 4,033,936 (-)NCBI
Celera204,093,733 - 4,109,892 (+)NCBICelera
Cytogenetic Map20p12NCBI
EHMT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl631,879,759 - 31,897,687 (-)EnsemblGRCh38hg38GRCh38
GRCh38631,879,759 - 31,897,698 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37631,847,536 - 31,865,475 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,955,515 - 31,973,443 (-)NCBINCBI36hg18NCBI36
Celera633,446,117 - 33,464,048 (-)NCBI
Cytogenetic Map6p21.33NCBI
HuRef631,633,340 - 31,651,520 (-)NCBIHuRef
CHM1_1631,849,677 - 31,867,625 (-)NCBICHM1_1
Ehmt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,117,426 - 35,133,049 (+)NCBIGRCm39mm39
GRCm39 Ensembl1735,117,445 - 35,133,028 (+)Ensembl
GRCm381734,898,463 - 34,914,073 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,898,469 - 34,914,052 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,035,444 - 35,050,992 (+)NCBIGRCm37mm9NCBIm37
MGSCv361734,506,555 - 34,522,103 (+)NCBImm8
Celera1737,993,807 - 38,010,279 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.45NCBI
Ehmt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437396,742 - 411,144 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437396,736 - 411,144 (-)NCBIChiLan1.0ChiLan1.0
EHMT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,429,265 - 32,446,860 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,429,271 - 32,451,844 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,542,946 - 31,560,894 (-)NCBIMhudiblu_PPA_v0panPan3
EHMT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,341,202 - 1,354,602 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,341,191 - 1,354,584 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,476,470 - 1,489,841 (-)NCBI
ROS_Cfam_1.0121,483,381 - 1,496,739 (-)NCBI
UMICH_Zoey_3.1121,341,088 - 1,354,451 (-)NCBI
UNSW_CanFamBas_1.0121,409,030 - 1,422,401 (-)NCBI
UU_Cfam_GSD_1.0121,474,485 - 1,487,852 (-)NCBI
Ehmt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,898,050 - 35,912,895 (-)NCBI
SpeTri2.0NW_0049367271,648,451 - 1,663,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EHMT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,977,683 - 23,993,478 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,977,683 - 23,992,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,818,555 - 27,834,344 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EHMT2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,123,935 - 40,141,942 (+)NCBI
ChlSab1.1 Ensembl1740,124,640 - 40,141,616 (+)Ensembl
Ehmt2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,354,271 - 24,368,319 (+)NCBI

Position Markers
D17Ertd710e  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0204,592,741 - 4,592,965NCBIRnor6.0
Rnor_5.0206,672,728 - 6,672,952UniSTSRnor5.0
RGSC_v3.4204,021,694 - 4,021,918UniSTSRGSC3.4
Celera204,109,653 - 4,109,877UniSTS
Cytogenetic Map20p12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2031518156896013Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2031518156896013Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2040391135875448Rat
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2015192000Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2040393174855475Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2020187706567419Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20126305996Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20299970747999707Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)20410895649108956Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125653396Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20201865447018654Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124652101Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20403911318872273Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20340211127968216Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20126305996Rat
4889857Pur27Proteinuria QTL 2712.20.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20403911318872273Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20133300419Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20137550487Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20128375393Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20128375393Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20128375393Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20128375393Rat
7175096Tcs1T cell selection QTL 1T cell selectionexpression2039105555533640Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20137550487Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20127357423Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20128375393Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:212
Count of miRNA genes:131
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000047370
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 57 41 19 41 2 5 74 35 41 11 2
Low 7 6 6 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000047370   ⟹   ENSRNOP00000042145
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,576,534 - 4,592,980 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081456   ⟹   ENSRNOP00000071106
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,576,057 - 4,592,980 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000085701   ⟹   ENSRNOP00000068632
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,576,062 - 4,592,980 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090125   ⟹   ENSRNOP00000074605
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,576,514 - 4,592,973 (+)Ensembl
RefSeq Acc Id: NM_212463   ⟹   NP_997628
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,919,624 - 3,936,076 (-)NCBI
Rnor_6.0204,576,534 - 4,592,980 (+)NCBI
Rnor_5.0206,656,049 - 6,672,967 (+)NCBI
RGSC_v3.4204,021,679 - 4,033,709 (-)RGD
Celera204,093,733 - 4,109,892 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255954   ⟹   XP_006256016
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,919,623 - 3,936,118 (-)NCBI
Rnor_6.0204,576,519 - 4,592,980 (+)NCBI
Rnor_5.0206,656,049 - 6,672,967 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255955   ⟹   XP_006256017
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,919,623 - 3,936,118 (-)NCBI
Rnor_6.0204,576,519 - 4,592,980 (+)NCBI
Rnor_5.0206,656,049 - 6,672,967 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255956   ⟹   XP_006256018
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,919,623 - 3,936,117 (-)NCBI
Rnor_6.0204,576,519 - 4,592,980 (+)NCBI
Rnor_5.0206,656,049 - 6,672,967 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255957   ⟹   XP_006256019
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,919,623 - 3,936,751 (-)NCBI
Rnor_6.0204,576,033 - 4,592,980 (+)NCBI
Rnor_5.0206,656,049 - 6,672,967 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255958   ⟹   XP_006256020
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,919,623 - 3,936,722 (-)NCBI
Rnor_6.0204,576,033 - 4,592,980 (+)NCBI
Rnor_5.0206,656,049 - 6,672,967 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255959   ⟹   XP_006256021
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,919,623 - 3,936,728 (-)NCBI
Rnor_6.0204,576,033 - 4,592,980 (+)NCBI
Rnor_5.0206,656,049 - 6,672,967 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098806   ⟹   XP_038954734
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,922,626 - 3,936,332 (-)NCBI
RefSeq Acc Id: XM_039098807   ⟹   XP_038954735
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,919,623 - 3,931,033 (-)NCBI
RefSeq Acc Id: XR_001842419
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,919,623 - 3,936,331 (-)NCBI
Rnor_6.0204,576,519 - 4,592,980 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_997628   ⟸   NM_212463
- UniProtKB: Q6MG72 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256019   ⟸   XM_006255957
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006256020   ⟸   XM_006255958
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JZM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256021   ⟸   XM_006255959
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JTA5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256016   ⟸   XM_006255954
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006256017   ⟸   XM_006255955
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006256018   ⟸   XM_006255956
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K8H1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074605   ⟸   ENSRNOT00000090125
RefSeq Acc Id: ENSRNOP00000071106   ⟸   ENSRNOT00000081456
RefSeq Acc Id: ENSRNOP00000068632   ⟸   ENSRNOT00000085701
RefSeq Acc Id: ENSRNOP00000042145   ⟸   ENSRNOT00000047370
RefSeq Acc Id: XP_038954735   ⟸   XM_039098807
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038954734   ⟸   XM_039098806
- Peptide Label: isoform X7
Protein Domains
ANK_REP_REGION   Pre-SET   SET

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701360
Promoter ID:EPDNEW_R11882
Type:multiple initiation site
Name:Ehmt2_2
Description:euchromatic histone lysine methyltransferase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11883  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,576,050 - 4,576,110EPDNEW
RGD ID:13701364
Promoter ID:EPDNEW_R11883
Type:multiple initiation site
Name:Ehmt2_1
Description:euchromatic histone lysine methyltransferase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11882  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,576,530 - 4,576,590EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 6656985 6656986 G A snv SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), GK/Ox (KNAW), SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), SHR/OlaIpcv (KNAW)


Assembly: Rnor_6.0
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 4576998 4576999 G A snv SHRSP/Gcrc (RGD), GK/Ox (RGD)
20 4585196 4585197 G A snv MR/N (MCW), ACI/N (MCW)
20 4585475 4585476 C G snv MR/N (MCW)
20 4586722 4586723 T C snv WN/N (MCW), F344/NRrrc (MCW), ACI/N (MCW), MR/N (MCW)
20 4590693 4590694 G A snv ACI/N (MCW), MR/N (MCW)
20 4592615 4592616 A C snv F344/NCrl (RGD)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1302972 AgrOrtholog
Ensembl Genes ENSRNOG00000030630 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000042145 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000068632 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000071106 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000074605 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047370 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000081456 UniProtKB/TrEMBL
  ENSRNOT00000085701 UniProtKB/TrEMBL
  ENSRNOT00000090125 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_dom UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  EHMT1/EHMT2 UniProtKB/TrEMBL
  EHMT2 UniProtKB/TrEMBL
  Pre-SET_dom UniProtKB/TrEMBL
  SET_dom UniProtKB/TrEMBL
KEGG Report rno:361798 UniProtKB/TrEMBL
NCBI Gene 361798 ENTREZGENE
PANTHER PTHR46307 UniProtKB/TrEMBL
  PTHR46307:SF1 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Pre-SET UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
PhenoGen Ehmt2 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  PRE_SET UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  PreSET UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
UniProt A0A0G2JTA5 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JZM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K8H1 ENTREZGENE, UniProtKB/TrEMBL
  Q6MG72 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1M7S8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-11 Ehmt2  euchromatic histone lysine methyltransferase 2  Ehmt2  euchromatic histone lysine N-methyltransferase 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Ehmt2  euchromatic histone lysine N-methyltransferase 2      Symbol and Name updated 1299863 APPROVED
2005-02-14 Bat8  HLA-B associated transcript 8, rat orthologue      Symbol and Name status set to provisional 70820 PROVISIONAL