Jmjd1c (jumonji domain containing 1C) - Rat Genome Database

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Gene: Jmjd1c (jumonji domain containing 1C) Rattus norvegicus
Analyze
Symbol: Jmjd1c
Name: jumonji domain containing 1C
RGD ID: 708458
Description: Predicted to enable chromatin DNA binding activity; histone H3K9 demethylase activity; and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within epithelial cell morphogenesis; male germ-line stem cell population maintenance; and seminiferous tubule development. Predicted to be part of chromatin and histone deacetylase complex. Orthologous to human JMJD1C (jumonji domain containing 1C); PARTICIPATES IN histone modification pathway; INTERACTS WITH 17beta-estradiol; ammonium chloride; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC171120; LOC309738; Pr2; probable JmjC domain-containing histone demethylation protein 2C
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82021,330,990 - 21,508,580 (-)NCBIGRCr8
mRatBN7.22021,332,147 - 21,494,220 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2021,332,147 - 21,463,122 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2022,056,316 - 22,187,053 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02021,409,384 - 21,540,123 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02021,886,509 - 22,016,928 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02022,751,743 - 22,914,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2022,751,743 - 22,882,672 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02024,842,479 - 25,004,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42022,151,774 - 22,283,264 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12022,165,991 - 22,172,529 (-)NCBI
Celera2022,690,312 - 22,820,989 (-)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
dicrotophos  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
glafenine  (EXP)
hexadecanoic acid  (ISO)
hydralazine  (ISO)
ketamine  (EXP)
lead(0)  (ISO)
mercury dichloride  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
nefazodone  (EXP)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
topotecan  (EXP)
tremolite asbestos  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Histone lysine methylation dynamics: establishment, regulation, and biological impact. Black JC, etal., Mol Cell. 2012 Nov 30;48(4):491-507. doi: 10.1016/j.molcel.2012.11.006.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Two classes of proteins dependent on either the presence or absence of thyroid hormone for interaction with the thyroid hormone receptor. Lee JW, etal., Mol Endocrinol 1995 Feb;9(2):243-54.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:24006281   PMID:25931508   PMID:32122211  


Genomics

Comparative Map Data
Jmjd1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82021,330,990 - 21,508,580 (-)NCBIGRCr8
mRatBN7.22021,332,147 - 21,494,220 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2021,332,147 - 21,463,122 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2022,056,316 - 22,187,053 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02021,409,384 - 21,540,123 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02021,886,509 - 22,016,928 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02022,751,743 - 22,914,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2022,751,743 - 22,882,672 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02024,842,479 - 25,004,503 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42022,151,774 - 22,283,264 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12022,165,991 - 22,172,529 (-)NCBI
Celera2022,690,312 - 22,820,989 (-)NCBICelera
Cytogenetic Map20p11NCBI
JMJD1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381063,167,225 - 63,521,890 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1063,167,221 - 63,521,850 (-)EnsemblGRCh38hg38GRCh38
GRCh371064,926,985 - 65,281,650 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361064,596,991 - 64,895,728 (-)NCBINCBI36Build 36hg18NCBI36
Build 341064,597,126 - 64,698,953NCBI
Celera1058,194,301 - 58,493,237 (-)NCBICelera
Cytogenetic Map10q21.3NCBI
HuRef1058,918,626 - 59,217,348 (-)NCBIHuRef
CHM1_11065,209,036 - 65,507,724 (-)NCBICHM1_1
T2T-CHM13v2.01064,025,342 - 64,380,031 (-)NCBIT2T-CHM13v2.0
Jmjd1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391066,932,189 - 67,092,105 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1066,931,904 - 67,092,105 (+)EnsemblGRCm39 Ensembl
GRCm381067,096,351 - 67,256,326 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1067,096,125 - 67,256,326 (+)EnsemblGRCm38mm10GRCm38
MGSCv371066,590,006 - 66,719,074 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361066,522,615 - 66,651,683 (+)NCBIMGSCv36mm8
Celera1068,219,302 - 68,348,326 (+)NCBICelera
Cytogenetic Map10B5.1NCBI
cM Map1034.85NCBI
Jmjd1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542516,344,141 - 16,493,527 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542516,343,314 - 16,552,552 (-)NCBIChiLan1.0ChiLan1.0
JMJD1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2875,352,260 - 75,709,401 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11075,357,583 - 75,712,193 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01059,674,227 - 60,028,763 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11061,999,571 - 62,299,260 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1061,999,571 - 62,295,332 (-)Ensemblpanpan1.1panPan2
JMJD1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1415,006,670 - 15,261,139 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl415,007,508 - 15,261,691 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha415,223,903 - 15,546,739 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0415,270,914 - 15,594,207 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl415,270,914 - 15,526,382 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1415,253,149 - 15,575,965 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0415,378,219 - 15,705,287 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0415,733,933 - 16,056,845 (-)NCBIUU_Cfam_GSD_1.0
Jmjd1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721365,839,313 - 66,071,363 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367531,414,240 - 1,645,161 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367531,413,935 - 1,645,974 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JMJD1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1466,640,849 - 66,920,324 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11466,640,845 - 66,966,911 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21471,877,693 - 71,964,824 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JMJD1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1967,913,062 - 68,135,555 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604828,656,568 - 29,020,569 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jmjd1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624791365,726 - 588,870 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624791306,827 - 589,134 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Jmjd1c
498 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:500
Count of miRNA genes:258
Interacting mature miRNAs:311
Transcripts:ENSRNOT00000000804
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat

Markers in Region
D20S1080  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22021,332,489 - 21,332,564 (+)MAPPERmRatBN7.2
Rnor_6.02022,752,086 - 22,752,160NCBIRnor6.0
Rnor_5.02024,842,822 - 24,842,896UniSTSRnor5.0
RGSC_v3.42022,152,117 - 22,152,191UniSTSRGSC3.4
Celera2022,690,655 - 22,690,729UniSTS
Cytogenetic Map20p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 40 48 32 19 32 8 8 74 35 38 11 8
Low 3 9 9 9 3 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF202265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY327507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000000804   ⟹   ENSRNOP00000000804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2021,332,147 - 21,462,887 (-)Ensembl
Rnor_6.0 Ensembl2022,751,743 - 22,882,672 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099911   ⟹   ENSRNOP00000079482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2021,332,147 - 21,463,122 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109730   ⟹   ENSRNOP00000094959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2021,332,147 - 21,406,331 (-)Ensembl
RefSeq Acc Id: NM_001191719   ⟹   NP_001178648
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,330,990 - 21,461,717 (-)NCBI
mRatBN7.22021,332,147 - 21,462,887 (-)NCBI
Rnor_6.02022,751,743 - 22,882,672 (-)NCBI
Rnor_5.02024,842,479 - 25,004,503 (-)NCBI
Celera2022,690,312 - 22,820,989 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256359   ⟹   XP_006256421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,330,996 - 21,461,755 (-)NCBI
mRatBN7.22021,332,147 - 21,462,919 (-)NCBI
Rnor_6.02022,751,749 - 22,882,707 (-)NCBI
Rnor_5.02024,842,479 - 25,004,503 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256360   ⟹   XP_006256422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,330,996 - 21,461,755 (-)NCBI
mRatBN7.22021,332,147 - 21,462,919 (-)NCBI
Rnor_6.02022,751,749 - 22,882,707 (-)NCBI
Rnor_5.02024,842,479 - 25,004,503 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256361   ⟹   XP_006256423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,330,996 - 21,508,580 (-)NCBI
mRatBN7.22021,332,147 - 21,494,214 (-)NCBI
Rnor_6.02022,751,749 - 22,914,080 (-)NCBI
Rnor_5.02024,842,479 - 25,004,503 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256362   ⟹   XP_006256424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,330,996 - 21,492,649 (-)NCBI
mRatBN7.22021,332,147 - 21,493,809 (-)NCBI
Rnor_6.02022,751,749 - 22,913,568 (-)NCBI
Rnor_5.02024,842,479 - 25,004,503 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256364   ⟹   XP_006256426
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,330,996 - 21,373,526 (-)NCBI
mRatBN7.22021,332,147 - 21,494,220 (-)NCBI
Rnor_6.02022,751,749 - 22,914,073 (-)NCBI
Rnor_5.02024,842,479 - 25,004,503 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098403   ⟹   XP_038954331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,330,996 - 21,405,098 (-)NCBI
mRatBN7.22021,332,147 - 21,406,274 (-)NCBI
RefSeq Acc Id: XM_039098405   ⟹   XP_038954333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,330,996 - 21,405,098 (-)NCBI
mRatBN7.22021,332,147 - 21,406,274 (-)NCBI
RefSeq Acc Id: XM_063278945   ⟹   XP_063135015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,330,996 - 21,375,423 (-)NCBI
RefSeq Acc Id: XR_010060624
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82021,332,445 - 21,461,755 (-)NCBI
RefSeq Acc Id: NP_001178648   ⟸   NM_001191719
- UniProtKB: A0A8I6ANV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256423   ⟸   XM_006256361
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ANV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256426   ⟸   XM_006256364
- Peptide Label: isoform X4
- UniProtKB: F1LMK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256424   ⟸   XM_006256362
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ANV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256422   ⟸   XM_006256360
- Peptide Label: isoform X2
- UniProtKB: F1LMK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256421   ⟸   XM_006256359
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZN85 (UniProtKB/TrEMBL),   A0A8I6ANV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000000804   ⟸   ENSRNOT00000000804
RefSeq Acc Id: XP_038954333   ⟸   XM_039098405
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ANV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954331   ⟸   XM_039098403
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ANV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000079482   ⟸   ENSRNOT00000099911
RefSeq Acc Id: ENSRNOP00000094959   ⟸   ENSRNOT00000109730
RefSeq Acc Id: XP_063135015   ⟸   XM_063278945
- Peptide Label: isoform X4
Protein Domains
JmjC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LMK8-F1-model_v2 AlphaFold F1LMK8 1-2525 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708458 AgrOrtholog
BioCyc Gene G2FUF-3864 BioCyc
Ensembl Genes ENSRNOG00000000648 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000804.7 UniProtKB/TrEMBL
  ENSRNOT00000099911.1 UniProtKB/TrEMBL
  ENSRNOT00000109730.1 UniProtKB/TrEMBL
Gene3D-CATH Cupin UniProtKB/TrEMBL
InterPro JHDM2-like UniProtKB/TrEMBL
  TF_JmjC_AAH UniProtKB/TrEMBL
NCBI Gene 171120 ENTREZGENE
PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2C-RELATED UniProtKB/TrEMBL
  PTHR12549 UniProtKB/TrEMBL
Pfam JmjC UniProtKB/TrEMBL
PhenoGen Jmjd1c PhenoGen
PROSITE JMJC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000648 RatGTEx
SMART JmjC UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
UniProt A0A8I5ZN85 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ANV7 ENTREZGENE, UniProtKB/TrEMBL
  F1LMK8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-28 Jmjd1c  jumonji domain containing 1C  Jmjd1c_predicted  jumonji domain containing 1C (predicted)  Data merged from RGD:1309964 737654 APPROVED
2005-07-08 Jmjd1c  jumonji domain containing 1C  LOC171120  Pr2 protein  Symbol and Name updated 1299863 APPROVED
2005-01-12 Jmjd1c_predicted  jumonji domain containing 1C (predicted)      Symbol and Name status set to approved 70820 APPROVED