Tbata (thymus, brain and testes associated) - Rat Genome Database

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Gene: Tbata (thymus, brain and testes associated) Rattus norvegicus
Analyze
Symbol: Tbata
Name: thymus, brain and testes associated
RGD ID: 1561665
Description: Predicted to be located in ciliary basal body and cytosol. Orthologous to human TBATA (thymus, brain and testes associated); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC499429; protein SPATIAL; RGD1561665; similar to spatial-delta
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82029,660,904 - 29,677,971 (+)NCBIGRCr8
mRatBN7.22029,118,055 - 29,135,124 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2029,118,070 - 29,135,109 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02030,786,239 - 30,804,354 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2030,791,422 - 30,804,165 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02032,577,261 - 32,596,093 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42028,529,402 - 28,546,221 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2030,550,338 - 30,568,452 (+)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11196687   PMID:17196196  


Genomics

Comparative Map Data
Tbata
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82029,660,904 - 29,677,971 (+)NCBIGRCr8
mRatBN7.22029,118,055 - 29,135,124 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2029,118,070 - 29,135,109 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02030,786,239 - 30,804,354 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2030,791,422 - 30,804,165 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02032,577,261 - 32,596,093 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42028,529,402 - 28,546,221 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2030,550,338 - 30,568,452 (+)NCBICelera
Cytogenetic Map20q11NCBI
TBATA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381070,771,238 - 70,785,377 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1070,771,238 - 70,785,401 (-)EnsemblGRCh38hg38GRCh38
GRCh371072,530,994 - 72,545,133 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361072,201,001 - 72,215,163 (-)NCBINCBI36Build 36hg18NCBI36
Build 341072,201,000 - 72,215,163NCBI
Celera1065,812,948 - 65,827,109 (-)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1066,524,657 - 66,538,817 (-)NCBIHuRef
CHM1_11072,813,786 - 72,827,950 (-)NCBICHM1_1
T2T-CHM13v2.01071,641,062 - 71,655,191 (-)NCBIT2T-CHM13v2.0
Tbata
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391061,007,743 - 61,024,620 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1061,007,733 - 61,024,620 (+)EnsemblGRCm39 Ensembl
GRCm381061,171,964 - 61,188,841 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1061,171,954 - 61,188,841 (+)EnsemblGRCm38mm10GRCm38
MGSCv371060,634,712 - 60,651,589 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361060,567,343 - 60,584,198 (+)NCBIMGSCv36mm8
Celera1062,272,512 - 62,289,788 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.16NCBI
Tbata
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543720,569,077 - 20,582,312 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543720,569,644 - 20,586,405 (+)NCBIChiLan1.0ChiLan1.0
TBATA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2882,921,726 - 82,935,876 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11082,927,047 - 82,941,197 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01067,241,683 - 67,255,906 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11069,766,969 - 69,781,074 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1069,766,971 - 69,781,074 (-)Ensemblpanpan1.1panPan2
TBATA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1421,635,277 - 21,650,067 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl421,635,292 - 21,649,383 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha421,769,725 - 21,784,541 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0421,915,827 - 21,928,351 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1421,809,054 - 21,823,858 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0422,014,424 - 22,029,234 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0422,366,590 - 22,381,422 (-)NCBIUU_Cfam_GSD_1.0
Tbata
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721359,431,869 - 59,445,643 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365217,926,509 - 7,938,171 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365217,926,509 - 7,934,923 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBATA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1473,681,767 - 73,697,340 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11473,682,853 - 73,695,700 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21479,531,068 - 79,545,349 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TBATA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1960,517,110 - 60,531,509 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604821,244,026 - 21,256,124 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbata
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247544,808,618 - 4,822,102 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247544,808,463 - 4,821,448 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tbata
35 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:41
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000000683, ENSRNOT00000047394
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 8 14
Low 12 13 6 8 6 6 7 17 3 26 7 6
Below cutoff 2 28 21 20 3 20 2 3 27 28 1 3 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006223908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_574753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000000683   ⟹   ENSRNOP00000000683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2029,118,070 - 29,135,109 (+)Ensembl
Rnor_6.0 Ensembl2030,791,422 - 30,804,165 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000047394   ⟹   ENSRNOP00000041407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2029,118,070 - 29,126,273 (+)Ensembl
Rnor_6.0 Ensembl2030,791,422 - 30,804,165 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101236   ⟹   ENSRNOP00000079500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2029,125,067 - 29,126,202 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101241   ⟹   ENSRNOP00000077911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2029,118,070 - 29,126,273 (+)Ensembl
RefSeq Acc Id: XM_008772959   ⟹   XP_008771181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,660,905 - 29,677,971 (+)NCBI
mRatBN7.22029,118,055 - 29,135,124 (+)NCBI
Rnor_6.02030,786,239 - 30,804,354 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099215   ⟹   XP_038955143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,663,524 - 29,677,971 (+)NCBI
mRatBN7.22029,120,669 - 29,135,124 (+)NCBI
RefSeq Acc Id: XM_039099216   ⟹   XP_038955144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,663,524 - 29,677,971 (+)NCBI
mRatBN7.22029,120,669 - 29,135,124 (+)NCBI
RefSeq Acc Id: XM_039099218   ⟹   XP_038955146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,660,904 - 29,677,971 (+)NCBI
mRatBN7.22029,118,055 - 29,135,124 (+)NCBI
RefSeq Acc Id: XM_039099219   ⟹   XP_038955147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,663,524 - 29,677,971 (+)NCBI
mRatBN7.22029,120,669 - 29,135,124 (+)NCBI
RefSeq Acc Id: XM_039099221   ⟹   XP_038955149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,663,524 - 29,674,061 (+)NCBI
mRatBN7.22029,120,669 - 29,131,214 (+)NCBI
RefSeq Acc Id: XM_039099223   ⟹   XP_038955151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,663,524 - 29,674,111 (+)NCBI
mRatBN7.22029,120,669 - 29,131,268 (+)NCBI
RefSeq Acc Id: XM_063279664   ⟹   XP_063135734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,663,524 - 29,677,971 (+)NCBI
RefSeq Acc Id: XM_063279665   ⟹   XP_063135735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,663,524 - 29,677,971 (+)NCBI
RefSeq Acc Id: XM_063279666   ⟹   XP_063135736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,663,524 - 29,677,971 (+)NCBI
RefSeq Acc Id: XM_063279667   ⟹   XP_063135737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,663,524 - 29,677,971 (+)NCBI
RefSeq Acc Id: XM_063279668   ⟹   XP_063135738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,663,524 - 29,677,971 (+)NCBI
RefSeq Acc Id: XM_063279669   ⟹   XP_063135739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,660,905 - 29,677,971 (+)NCBI
RefSeq Acc Id: XM_063279670   ⟹   XP_063135740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,660,905 - 29,677,971 (+)NCBI
RefSeq Acc Id: XM_063279671   ⟹   XP_063135741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,663,524 - 29,673,486 (+)NCBI
RefSeq Acc Id: XM_574753   ⟹   XP_574753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82029,660,905 - 29,677,971 (+)NCBI
mRatBN7.22029,118,055 - 29,135,124 (+)NCBI
Rnor_6.02030,786,253 - 30,804,354 (+)NCBI
Rnor_5.02032,577,261 - 32,596,093 (+)NCBI
RGSC_v3.42028,529,402 - 28,546,221 (+)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_574753   ⟸   XM_574753
- Peptide Label: isoform X12
- UniProtKB: D3ZGK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008771181   ⟸   XM_008772959
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000000683   ⟸   ENSRNOT00000000683
RefSeq Acc Id: ENSRNOP00000041407   ⟸   ENSRNOT00000047394
RefSeq Acc Id: XP_038955146   ⟸   XM_039099218
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038955143   ⟸   XM_039099215
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038955147   ⟸   XM_039099219
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038955144   ⟸   XM_039099216
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038955151   ⟸   XM_039099223
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038955149   ⟸   XM_039099221
- Peptide Label: isoform X14
RefSeq Acc Id: ENSRNOP00000079500   ⟸   ENSRNOT00000101236
RefSeq Acc Id: ENSRNOP00000077911   ⟸   ENSRNOT00000101241
RefSeq Acc Id: XP_063135739   ⟸   XM_063279669
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063135740   ⟸   XM_063279670
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063135736   ⟸   XM_063279666
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063135734   ⟸   XM_063279664
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063135737   ⟸   XM_063279667
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063135735   ⟸   XM_063279665
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063135738   ⟸   XM_063279668
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063135741   ⟸   XM_063279671
- Peptide Label: isoform X16

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LZT3-F1-model_v2 AlphaFold F1LZT3 1-384 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701611
Promoter ID:EPDNEW_R12124
Type:single initiation site
Name:Tbata_1
Description:thymus, brain and testes associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02030,791,439 - 30,791,499EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561665 AgrOrtholog
BioCyc Gene G2FUF-3727 BioCyc
Ensembl Genes ENSRNOG00000000564 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000683 ENTREZGENE
  ENSRNOT00000000683.8 UniProtKB/TrEMBL
  ENSRNOT00000047394.7 UniProtKB/TrEMBL
  ENSRNOT00000101236.1 UniProtKB/TrEMBL
  ENSRNOT00000101241.1 UniProtKB/TrEMBL
InterPro TBATA-like UniProtKB/TrEMBL
NCBI Gene 499429 ENTREZGENE
PANTHER PROTEIN TBATA UniProtKB/TrEMBL
  PTHR33772 UniProtKB/TrEMBL
Pfam SPATIAL UniProtKB/TrEMBL
PhenoGen Tbata PhenoGen
RatGTEx ENSRNOG00000000564 RatGTEx
UniProt A0A8I5YC32_RAT UniProtKB/TrEMBL
  A0A8I5ZR38_RAT UniProtKB/TrEMBL
  D3ZGK3 ENTREZGENE, UniProtKB/TrEMBL
  F1LZT3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-25 Tbata  thymus, brain and testes associated  RGD1561665  similar to spatial-delta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561665  similar to spatial-delta   RGD1561665_predicted  similar to spatial-delta (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561665_predicted  similar to spatial-delta (predicted)  LOC499429  similar to spatial-delta  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499429  similar to spatial-delta      Symbol and Name status set to provisional 70820 PROVISIONAL