RT1-A2 (RT1 class Ia, locus A2) - Rat Genome Database

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Gene: RT1-A2 (RT1 class Ia, locus A2) Rattus norvegicus
Analyze
Symbol: RT1-A2
Name: RT1 class Ia, locus A2
RGD ID: 1595923
Description: Predicted to enable beta-2-microglobulin binding activity; peptide antigen binding activity; and signaling receptor binding activity. Predicted to be involved in several processes, including positive regulation of gene expression; positive regulation of lymphocyte proliferation; and regulation of leukocyte mediated cytotoxicity. Predicted to act upstream of or within antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent and negative regulation of neuron projection development. Predicted to be located in cell surface and plasma membrane. Predicted to be part of MHC class I protein complex and MHC class Ib protein complex. Predicted to be active in external side of plasma membrane and extracellular space. Predicted to colocalize with membrane raft. Human ortholog(s) of this gene implicated in several diseases, including asthma (multiple); autoimmune disease (multiple); eye disease (multiple); human immunodeficiency virus infectious disease (multiple); and inner ear disease (multiple). Orthologous to several human genes including HLA-B (major histocompatibility complex, class I, B); HLA-C (major histocompatibility complex, class I, C); and HLA-E (major histocompatibility complex, class I, E); PARTICIPATES IN allograft rejection pathway; antigen processing and presentation pathway; autoimmune thyroiditis pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC95123; RT1 class I gene (A-2); RT1 class Ia, A2n; RT1 class Ia, locus A2 (mapped); RT1-A2_mapped; RT1-A2n; RT1.A2(N); RT1A-2
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2204,870,939 - 4,910,183 (+)NCBImRatBN7.2
Rnor_6.0205,374,990 - 5,378,536 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,374,985 - 5,378,539 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,433,437 - 7,436,984 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,021,816 - 5,025,341 (+)NCBIRGSC3.4rn4RGSC3.4
Celera206,470,599 - 6,474,124 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
4-phenylbutyric acid  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aconitine  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium acetate  (EXP)
ammonium chloride  (EXP)
antimycin A  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cefuroxime  (ISO)
ciprofloxacin  (ISO)
clindamycin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
etoposide  (ISO)
famotidine  (ISO)
fenthion  (ISO)
fumonisin B1  (ISO)
gentamycin  (EXP)
hydrochlorothiazide  (ISO)
isotretinoin  (ISO)
ketorolac  (ISO)
lincomycin  (ISO)
malathion  (ISO)
menadione  (ISO)
methidathion  (ISO)
methylparaben  (ISO)
microcystin-LR  (ISO)
mifepristone  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (ISO)
ochratoxin A  (ISO)
ofloxacin  (ISO)
paracetamol  (EXP)
pirinixic acid  (ISO)
piroxicam  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
quercitrin  (ISO)
resveratrol  (ISO)
selenium atom  (ISO)
simvastatin  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thalidomide  (ISO)
thimerosal  (ISO)
titanium dioxide  (ISO)
tolmetin  (ISO)
Triptolide  (EXP)
triptonide  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vitamin E  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adaptive immune response  (ISO)
antibacterial humoral response  (ISO)
antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent  (ISO)
antigen processing and presentation of endogenous peptide antigen via MHC class Ib  (IBA,ISO)
antigen processing and presentation of exogenous peptide antigen via MHC class Ib  (ISO)
CD8-positive, alpha-beta T cell activation  (ISO)
defense response to Gram-positive bacterium  (ISO)
immune response  (IEA)
natural killer cell tolerance induction  (ISO)
negative regulation of natural killer cell mediated cytotoxicity  (ISO)
negative regulation of neuron projection development  (ISO)
positive regulation of antibody-dependent cellular cytotoxicity  (ISO)
positive regulation of CD8-positive, alpha-beta T cell activation  (ISO)
positive regulation of CD8-positive, alpha-beta T cell proliferation  (ISO)
positive regulation of immunoglobulin production  (ISO)
positive regulation of interleukin-13 production  (ISO)
positive regulation of interleukin-4 production  (ISO)
positive regulation of natural killer cell cytokine production  (ISO)
positive regulation of natural killer cell mediated cytotoxicity  (ISO)
positive regulation of natural killer cell mediated immunity  (ISO)
positive regulation of natural killer cell proliferation  (ISO)
positive regulation of T cell mediated cytotoxicity  (ISO)
positive regulation of TRAIL production  (ISO)
positive regulation of tumor necrosis factor production  (ISO)
protection from natural killer cell mediated cytotoxicity  (ISO)
regulation of natural killer cell mediated immunity  (ISO)
T cell mediated cytotoxicity  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. A novel instance of class I modification (cim) affecting two of three rat class I RT1-A molecules within one MHC haplotype. Gonzalez-Munoz AL, etal., J Immunol. 2003 Jul 1;171(1):274-84.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1538753   PMID:9427624   PMID:9443915   PMID:9486650   PMID:9754572   PMID:10799855   PMID:11685465   PMID:12411439   PMID:12477932   PMID:12763482   PMID:12902470   PMID:14735325  
PMID:16474394   PMID:17179229   PMID:18083576   PMID:18339401   PMID:18448674   PMID:19666135   PMID:20018625   PMID:22562814   PMID:23100519   PMID:23335510   PMID:25631937   PMID:28676677  
PMID:29531166   PMID:30087334   PMID:30134159  


Genomics

Comparative Map Data
RT1-A2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2204,870,939 - 4,910,183 (+)NCBImRatBN7.2
Rnor_6.0205,374,990 - 5,378,536 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,374,985 - 5,378,539 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,433,437 - 7,436,984 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,021,816 - 5,025,341 (+)NCBIRGSC3.4rn4RGSC3.4
Celera206,470,599 - 6,474,124 (+)NCBICelera
Cytogenetic Map20p12NCBI
HLA-E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,489,509 - 30,494,194 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl630,489,509 - 30,494,194 (+)EnsemblGRCh38hg38GRCh38
GRCh37630,457,286 - 30,461,971 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,565,250 - 30,569,077 (+)NCBINCBI36hg18NCBI36
Build 34630,565,287 - 30,568,337NCBI
Celera632,055,310 - 32,060,109 (+)NCBI
Cytogenetic Map6p22.1NCBI
HuRef630,257,312 - 30,262,111 (+)NCBIHuRef
CHM1_1630,459,288 - 30,464,087 (+)NCBICHM1_1
T2T-CHM13v2.0630,353,696 - 30,358,381 (+)NCBI
H2-D1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,482,070 - 35,486,473 (+)NCBIGRCm39mm39
GRCm39 Ensembl1735,481,706 - 35,486,475 (+)Ensembl
GRCm381735,263,094 - 35,267,497 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,262,730 - 35,267,499 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,400,039 - 35,404,442 (+)NCBIGRCm37mm9NCBIm37
MGSCv361734,376,195 - 34,380,445 (+)NCBImm8
MGSCv361734,871,167 - 34,875,408 (+)NCBImm8
Cytogenetic Map17B1NCBI
cM Map1718.61NCBI


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2046066076691706Rat
4889857Pur27Proteinuria QTL 2712.20.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
7175096Tcs1T cell selection QTL 1T cell selectionexpression2047270785024580Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:75
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000038660, ENSRNOT00000052270
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 7 26 17 15 17 1 3 9 17 9
Low 30 31 24 4 24 8 10 66 26 23 2 8
Below cutoff 6 5 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000038660
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,375,650 - 5,377,440 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000052270   ⟹   ENSRNOP00000050701
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,374,985 - 5,378,539 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082497   ⟹   ENSRNOP00000073153
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,555,782 - 3,559,486 (-)Ensembl
RefSeq Acc Id: NM_001008829   ⟹   NP_001008829
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,871,012 - 4,874,537 (+)NCBI
Rnor_6.0205,375,011 - 5,378,536 (+)NCBI
Rnor_5.0207,433,437 - 7,436,984 (+)NCBI
RGSC_v3.4205,021,816 - 5,025,341 (+)RGD
Celera206,470,599 - 6,474,124 (+)RGD
Sequence:
RefSeq Acc Id: XM_017601545   ⟹   XP_017457034
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,870,945 - 4,874,540 (+)NCBI
Rnor_6.0205,374,990 - 5,378,535 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098426   ⟹   XP_038954354
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,870,939 - 4,874,540 (+)NCBI
RefSeq Acc Id: XM_039098427   ⟹   XP_038954355
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2204,870,939 - 4,910,183 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001008829   ⟸   NM_001008829
- Peptide Label: precursor
- UniProtKB: Q6MGB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457034   ⟸   XM_017601545
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000050701   ⟸   ENSRNOT00000052270
RefSeq Acc Id: XP_038954355   ⟸   XM_039098427
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038954354   ⟸   XM_039098426
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000073153   ⟸   ENSRNOT00000082497
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MGB8-F1-model_v2 AlphaFold Q6MGB8 1-366 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701406
Promoter ID:EPDNEW_R11930
Type:single initiation site
Name:RT1-A2_1
Description:RT1 class Ia, locus A2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,374,985 - 5,375,045EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 5375021 5375022 C A snv ACI/EurMcwi (2019), BUF/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LE/Stm (2019), LEXF4/Stm (2020), LEXF2B/Stm (2019), FXLE16/Stm (2020), FHH/EurMcwi (2019), DA/OlaHsd (2019), F344/N (2020), F344/Stm (2019)
20 5375041 5375042 C G snv SBH/Ygl (MCW), FHL/EurMcwi (MCW), SBN/Ygl (MCW)
20 5375060 5375061 C T snv FHL/EurMcwi (MCW), ACI/EurMcwi (MCW), SBN/Ygl (MCW)
20 5375071 5375072 C T snv MR/N (MCW), FHL/EurMcwi (MCW)
20 5375290 5375291 C G snv PVG/Seac (2019)
20 5375293 5375294 T C snv GK/FarMcwi (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), BXH2/CubMcwi (2020), HXB31/IpcvMcwi (2019)
20 5375310 5375311 G A snv FHL/EurMcwi (MCW), WAG/RijCrl (2020), SBN/Ygl (MCW), MR/N (MCW), BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SBH/Ygl (MCW)
20 5375311 5375312 C G snv CDR, CDS, FHL/EurMcwi (MCW), FHH/EurMcwi (2019), WN/N (2020), MR/N (2020), MWF/Hsd (2019), WKY/NCrl (2019), WKY/N (2020), LEW/Crl (2019)
20 5375314 5375315 T C snv PVG/Seac (2019)
20 5375323 5375324 C A snv CDR, CDS, GH/OmrMcwi (MCW), WN/N (2020), WKY/NCrl (2019), WKY/N (2020), LEW/Crl (2019)
20 5375325 5375326 G A snv BUF/N (2020), FXLE16/Stm (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LN/MavRrrcAek (2020), WN/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), LEXF10A/StmMcwi (2020)
20 5375329 5375330 T C snv BUF/N (2020), FXLE16/Stm (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LN/MavRrrcAek (2020), WN/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), LEXF10A/StmMcwi (2020)
20 5375332 5375333 G A snv BUF/N (2020), FXLE16/Stm (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LN/MavRrrcAek (2020), WN/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), LEXF10A/StmMcwi (2020)
20 5375335 5375336 A T snv BUF/N (2020), FXLE16/Stm (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), WN/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), LEXF10A/StmMcwi (2020)
20 5375338 5375339 C T snv HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019)
20 5375343 5375344 T C snv GH/OmrMcwi (MCW), FHH/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), SBH/Ygl (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), CDS, CDR
20 5375359 5375360 A T snv SBN/Ygl (MCW)
20 5375361 5375362 G C snv LEXF10A/StmMcwi (2020), SHRSP/A3NCrl (2019), WKY/NCrl (2019), WKY/N (2020), BUF/N (2020), LEW/Crl (2019), HXB2/IpcvMcwi (2019), FXLE16/Stm (2020), FHH/EurMcwi (2019), LN/MavRrrcAek (2020), WN/N (2020)
20 5375440 5375441 G A snv COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), SBN/Ygl (MCW), MR/N (MCW), WKY/N (2020)
20 5375442 5375443 G C snv MR/N (2020), FHH/EurMcwi (2019)
20 5375463 5375464 A G snv CDR, CDS
20 5375481 5375482 A G snv LEXF4/Stm (2020), FHH/EurMcwi (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), F344/Stm (2019), DA/OlaHsd (2019), LE/Stm (2019), FXLE16/Stm (2020)
20 5375494 5375495 A G snv HXB31/IpcvMcwi (2019), LEXF3/Stm (2020), SHRSP/A3NCrl (2019), F344/DuCrl (2019), BXH2/CubMcwi (2020)
20 5375500 5375501 A C snv CDR, CDS
20 5375503 5375504 G T snv MR/N (2020)
20 5375505 5375506 G A snv CDS, CDR, ACI/EurMcwi (2019), ACI/N (2020)
20 5375514 5375515 A G snv SR/JrHsd (2020), MWF/Hsd (2019), M520/N (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), GK/FarMcwi (2019), FXLE16/Stm (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), FHH/EurMcwi (2019), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020)
20 5375520 5375521 G C snv CDS, CDR
20 5375526 5375527 C T snv SBN/Ygl (MCW), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
20 5375539 5375540 A G snv BXH2/CubMcwi (2020), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), SHRSP/A3NCrl (2019)
20 5375540 5375541 G C snv SBN/Ygl (MCW), LE/Stm (2019), PVG/Seac (2019), MWF/Hsd (2019), M520/NRrrcMcwi (2019)
20 5375543 5375544 C A snv FHH/EurMcwi (2019), GK/FarMcwi (2019), MWF/Hsd (2019), ACI/EurMcwi (2019)
20 5375547 5375548 G A snv SBN/Ygl (MCW), M520/NRrrcMcwi (2019), MWF/Hsd (2019), PVG/Seac (2019)
20 5375735 5375736 C A snv LEW/Crl (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020)
20 5375744 5375745 T A snv FHH/EurMcwi (2019), DA/OlaHsd (2019), ACI/EurMcwi (2019), LEXF1C/Stm (2019)
20 5375744 5375745 T C snv GH/OmrMcwi (MCW)
20 5375749 5375750 A G snv SBN/Ygl (MCW), SR/JrHsd (MCW), FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW)
20 5375750 5375751 G T snv CDS, CDR
20 5375753 5375754 T C snv CDS, CDR
20 5375765 5375766 A T snv GK/FarMcwi (2019), WN/N (MCW), CDS, WKY/NCrl (2019), CDR
20 5375776 5375777 G A snv COP/CrCrl (MCW & UW), SBN/Ygl (MCW), ACI/EurMcwi (2019), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019)
20 5375778 5375779 C G snv ACI/EurMcwi (2019), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), LEXF2B/Stm (2019), LEXF1C/Stm (2019), HXB31/IpcvMcwi (2019), FXLE18/Stm (2020), F344/NCrl (2019), DA/OlaHsd (2019)
20 5375779 5375780 G C snv COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), SR/JrHsd (MCW), SBN/Ygl (MCW)
20 5375783 5375784 G T snv CDS
20 5375791 5375792 C A snv GK/FarMcwi (2019)
20 5375791 5375792 C T snv GH/OmrMcwi (MCW)
20 5375794 5375795 G A snv ACI/N (2020), COP/CrCrl (MCW & UW)
20 5375821 5375822 C A snv SHR/OlalpcvMcwi (2019), BXH2/CubMcwi (2020), SHRSP/A3NCrl (2019), HXB31/IpcvMcwi (2019), HXB2/IpcvMcwi (2019)
20 5375822 5375823 G T snv FHL/EurMcwi (MCW), SBN/Ygl (MCW), SBH/Ygl (MCW)
20 5375855 5375856 C T snv M520/N (MCW)
20 5375860 5375861 A G snv FHL/EurMcwi (MCW), WKY/NCrl (2019), SBH/Ygl (MCW), SBN/Ygl (MCW), BUF/N (2020), BXH2/CubMcwi (2020), FXLE16/Stm (2020), FXLE18/Stm (2020), HXB20/IpcvMcwi (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), GH/OmrMcwi (MCW)
20 5375861 5375862 C T snv CDR, COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), CDS
20 5375864 5375865 C T snv M520/NRrrcMcwi (2019), PVG/Seac (2019), BXH2/CubMcwi (2020), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), SHRSP/A3NCrl (2019)
20 5375867 5375868 C G snv HXB31/IpcvMcwi (2019)
20 5375872 5375873 T A snv GH/OmrMcwi (MCW), CDR
20 5375873 5375874 T C snv GH/OmrMcwi (MCW), CDR
20 5375876 5375877 C T snv WKY/NCrl (2019), WAG/RijCrl (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBN/Ygl (MCW), ACI/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/N (2020)
20 5375885 5375886 T A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020)
20 5375886 5375887 C G snv ACI/EurMcwi (MCW), WKY/N (2020), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), GK/Ox (RGD), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), COP/CrCrl (MCW & UW)
20 5375891 5375892 G A snv CDR, CDS, WN/N (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), Buf/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), MR/N (MCW), WKY/N (MCW), WKY/N (MCW), WN/N (MCW), WN/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020)
20 5375891 5375892 G T snv WKY/N (MCW), WKY/N (MCW)
20 5375911 5375912 G C snv SBH/Ygl (MCW)
20 5375917 5375918 G A snv FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), WAG/RijCrl (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), LE/Stm (2019)
20 5375918 5375919 C T snv ACI/EurMcwi (MCW), WKY/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/N (2020), MR/N (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), COP/CrCrl (MCW & UW)
20 5375932 5375933 G T snv SHRSP/A3NCrl (2019), BXH2/CubMcwi (2020)
20 5375935 5375936 T G snv ACI/EurMcwi (MCW), SS/JrHsdMcwi (2019), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), ACI/EurMcwi (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), SR/JrHsd (2020), COP/CrCrl (MCW & UW)
20 5375942 5375943 A T snv ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), M520/NRrrcMcwi (2019), M520/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019)
20 5375944 5375945 G A snv ACI/EurMcwi (MCW), WAG/RijCrl (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), COP/CrCrl (MCW & UW)
20 5375945 5375946 G T snv SS/JrHsdMcwi (2019), LEXF10A/StmMcwi (2020)
20 5375956 5375957 G A snv SBN/Ygl (MCW), SBH/Ygl (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BN/NHsdMcwi (2019), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW)
20 5375957 5375958 A T snv WKY/NCrl (2019)
20 5375961 5375962 G T snv COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW)
20 5375965 5375966 C T snv CDS, CDR
20 5375966 5375967 G A snv COP/CrCrl (MCW & UW)
20 5375969 5375970 G A snv FHH/EurMcwi (MCW), SBH/Ygl (MCW), FHL/EurMcwi (MCW)
20 5375971 5375972 T C snv WKY/NCrl (2019), M520/N (MCW)
20 5375972 5375973 A T snv SHR/OlalpcvMcwi (2019), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), SHRSP/A3NCrl (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), M520/NRrrcMcwi (2019), M520/N (2020), PVG/Seac (2019), GK/FarMcwi (2019)
20 5375983 5375984 G C snv MR/N (2020)
20 5376001 5376002 C T snv M520/N (2020), LN/MavRrrcAek (2020), BUF/N (2020)
20 5376004 5376005 T C snv LEXF2B/Stm (2019), MR/N (2020), SR/JrHsd (2020), F344/N (2020), WAG/RijCrl (2020), ACI/EurMcwi (2019), F344/NCrl (2019)
20 5377001 5377002 G A snv FHL/EurMcwi (MCW), WN/N (2020), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BN-Lx/CubMcwi (2019), BN/SsN (2020), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), GK/FarMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1C/Stm (2019), LEXF2B/Stm (2019), MR/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), GH/OmrMcwi (MCW)
20 5377002 5377003 C T snv FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), FHH/EurMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019)
20 5377024 5377025 A C snv CDR, WKY/N (2020), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), BUF/N (2020), FHH/EurMcwi (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), WAG/RijCrl (2020), CDS
20 5377028 5377029 G C snv GH/OmrMcwi (MCW), CDR
20 5377037 5377038 G A snv CDR, WKY/NCrl (2019), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), SS/JrHsdMcwi (2019), ACI/EurMcwi (MCW)
20 5377038 5377039 T C snv LEXF1A/Stm (2019), LL/MavRrrcAek (2020), WAG/RijCrl (2020), SR/JrHsd (2020), PVG/Seac (2019)
20 5377062 5377063 G A snv CDR
20 5377078 5377079 C A snv CDR, SS/JrHsdMcwi (2019), SR/JrHsd (MCW), BUF/N (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), GK/FarMcwi (2019), HXB31/IpcvMcwi (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), M520/NRrrcMcwi (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SBH/Ygl (MCW)
20 5377085 5377086 C A snv FHH/EurMcwi (MCW), ACI/N (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), HXB2/IpcvMcwi (2019)
20 5377085 5377086 C G snv CDR, CDS
20 5377089 5377090 C T snv FHH/EurMcwi (MCW)
20 5377096 5377097 G T snv CDR, CDS, WN/N (2020), WKY/NCrl (2019), WKY/N (2020), LEW/Crl (2019)
20 5377106 5377107 G C snv CDS, CDR
20 5377124 5377125 A G snv LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), HXB31/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), GK/FarMcwi (2019), F344/Stm (2019), F344/NCrl (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SHR/OlalpcvMcwi (2019), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), BXH2/CubMcwi (2020), F344/DuCrl (2019), SHRSP/A3NCrl (2019), LL/MavRrrcAek (2020)
20 5377133 5377134 G A snv SS/JrHsdMcwi (2019), LL/MavRrrcAek (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), F344/Stm (2019), F344/NCrl (2019), F344/DuCrl (2019), SS/JrHsdMcwi (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW)
20 5377154 5377155 G T snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
20 5377161 5377162 C A snv SBN/Ygl (MCW)
20 5377175 5377176 G A snv MR/N (2020)
20 5377190 5377191 C G snv SBH/Ygl (MCW)
20 5377193 5377194 C T snv HXB31/IpcvMcwi (2019), LH/MavRrrcAek (2020), M520/NRrrcMcwi (2019), MR/N (2020), PVG/Seac (2019), WKY/NCrl (2019), WKY/N (2020), FHH/EurMcwi (2019), FXLE16/Stm (2020), HXB2/IpcvMcwi (2019)
20 5377194 5377195 T C snv F344/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), PVG/Seac (2019), MWF/Hsd (2019), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), WKY/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019)
20 5377197 5377198 G C snv WAG/RijCrl (2020), SR/JrHsd (2020), MWF/Hsd (2019), MR/N (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), FHL/EurMcwi (MCW), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), SS/JrHsdMcwi (MCW), SBN/Ygl (MCW), FXLE18/Stm (2020)
20 5377209 5377210 A G snv FXLE18/Stm (2020), WKY/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), WN/N (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019)
20 5377210 5377211 T G snv SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), HXB31/IpcvMcwi (2019), GK/FarMcwi (2019), BXH2/CubMcwi (2020), SS/JrHsdMcwi (MCW)
20 5377221 5377222 G A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW)
20 5377228 5377229 G T snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW)
20 5377238 5377239 C A snv MR/N (2020)
20 5377248 5377249 C T snv ACI/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/N (2020), ACI/EurMcwi (2019), F344/NRrrc (MCW), ACI/N (MCW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), GH/OmrMcwi (MCW), CDR, CDS
20 5377250 5377251 C A snv F344/N (2020), F344/NCrl (2019), FHH/EurMcwi (2019), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), F344/DuCrl (2019), DA/OlaHsd (2019), BXH2/CubMcwi (2020), BUF/N (2020), ACI/N (2020), ACI/EurMcwi (2019), F344/Stm (2019)
20 5377361 5377362 G C snv WKY/N (MCW), WN/N (MCW)
20 5377362 5377363 C T snv GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), SBH/Ygl (MCW), WAG/RijCrl (2020), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), MWF/Hsd (2019)
20 5377374 5377375 A C snv WAG/RijCrl (2020), MWF/Hsd (2019)
20 5377380 5377381 T A snv SS/JrHsdMcwi (2019), WAG/RijCrl (2020), GH/OmrMcwi (MCW), MWF/Hsd (2019), SR/JrHsd (2020)
20 5377398 5377399 G A snv GK/FarMcwi (2019), HXB2/IpcvMcwi (2019)
20 5377401 5377402 A G snv M520/N (2020), WKY/NCrl (2019)
20 5377404 5377405 T G snv HXB2/IpcvMcwi (2019), GK/FarMcwi (2019)
20 5377408 5377409 T C snv CDS, CDR
20 5377413 5377414 C A snv HXB10/IpcvMcwi (2019), BN/NHsdMcwi (2019), BN/NHsdMcwi (2020), BN-Lx/CubMcwi (2019), GH/OmrMcwi (MCW), HXB20/IpcvMcwi (2020), LEW/Crl (2019), WKY/NCrl (2019), CDS, WN/N (2020), CDR, WKY/N (2020)
20 5377440 5377441 A T snv GK/FarMcwi (2019), HXB2/IpcvMcwi (2019)
20 5377447 5377448 G A snv GK/FarMcwi (2019), HXB2/IpcvMcwi (2019)
20 5377462 5377463 T A snv GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), WKY/NCrl (2019)
20 5377485 5377486 A G snv BN-Lx/CubMcwi (2019), WN/N (2020), CDR, BN/NHsdMcwi (2019), HXB10/IpcvMcwi (2019), LEW/Crl (2019), WKY/NCrl (2019), WKY/N (2020), CDS
20 5377670 5377671 A G snv SBN/Ygl (MCW)
20 5377692 5377693 C G snv BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2019), BN/SsN (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), LEXF1A/Stm (2019), LL/MavRrrcAek (2020), SR/JrHsd (2020), ACI/EurMcwi (2019)
20 5377904 5377905 C G snv FHL/EurMcwi (MCW), MWF/Hsd (2019), LEXF1C/Stm (2019), SS/JrHsdMcwi (MCW), CDR, WAG/RijCrl (2020), SBN/Ygl (MCW), SR/JrHsd (MCW)
20 5377911 5377912 C G snv CDR, LEW/Crl (2019), WKY/NCrl (2019)
20 5377915 5377916 G A snv SR/JrHsd (MCW)
20 5377927 5377928 C G snv WAG/RijCrl (2020), M520/NRrrcMcwi (2019), LE/Stm (2019), LEXF4/Stm (2020), BUF/N (2020), CDR, SBH/Ygl (MCW)
20 5377928 5377929 C T snv FHH/EurMcwi (2019), M520/NRrrcMcwi (2019)
20 5377931 5377932 A T snv SR/JrHsd (MCW)
20 5377934 5377935 G T snv FHH/EurMcwi (2019), M520/NRrrcMcwi (2019)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 7433489 7433490 C G snv FHL/EurMcwi (MCW)
20 7433744 7433745 G T snv LE/OrlBarth (UDEL)
20 7433758 7433759 G A snv Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), SBN/Ygl (MCW), SBH/Ygl (MCW), FHL/EurMcwi (MCW)
20 7433771 7433772 C A snv ZFDM (KyushuU)
20 7433786 7433787 C T snv DOB/Oda (KyushuU), ZFDM (KyushuU), F344/Jcl (KyushuU), HWY/Slc (KyushuU), F344/Stm (KyushuU), IS-Tlk/Kyo (KyushuU), F344/NSlc (KyushuU), LE/Stm (KyushuU), F344/DuCrlCrlj (KyushuU), IS/Kyo (KyushuU), NIG-III/Hok (KyushuU)
20 7433791 7433792 T C snv IS/Kyo (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), F344/NSlc (KyushuU), ZFDM (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), F344/Jcl (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), IS-Tlk/Kyo (KyushuU)
20 7433888 7433889 G A snv BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), ZFDM (KyushuU)
20 7433897 7433898 C T snv SBH/Ygl (MCW)
20 7433911 7433912 A G snv HWY/Slc (KyushuU), DOB/Oda (KyushuU), BDIX/NemOda (KyushuU)
20 7433942 7433943 A G snv COP/CrCrl (MCW & UW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), FHL/EurMcwi (MCW)
20 7433948 7433949 A C snv ZFDM (KyushuU), ZF (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), LEC/Tj (KyushuU), RCS/Kyo (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU)
20 7433962 7433963 A G snv SDLEF7/Barth (UDEL)
20 7433974 7433975 C T snv SDLEF7/Barth (UDEL)
20 7433991 7433992 C A snv SDLEF7/Barth (UDEL)
20 7434224 7434225 G A snv SBN/Ygl (MCW), SS/JrHsdMcwi (MCW)
20 7434227 7434228 G C snv HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), DOB/Oda (KyushuU), KFRS3B/Kyo (KyushuU)
20 7434270 7434271 G T snv Crl:SD (UDEL)
20 7434308 7434309 A G snv SDLEF7/Barth (UDEL), ZFDM (KyushuU), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), LEC/Tj (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), Crl:SD (UDEL)
20 7434320 7434321 T A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), SS/JrHsdMcwi (MCW), DOB/Oda (KyushuU)
20 7434321 7434322 T C snv ACI/EurMcwi (MCW), ZFDM (KyushuU), SS/JrHsdMcwi (MCW), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), LEC/Tj (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), COP/CrCrl (MCW & UW)
20 7434322 7434323 T G snv ACI/EurMcwi (MCW), ZFDM (KyushuU), SS/JrHsdMcwi (MCW), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), LEC/Tj (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), COP/CrCrl (MCW & UW)
20 7434324 7434325 C T snv SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), ZF (KyushuU), IS-Tlk/Kyo (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), KFRS3B/Kyo (KyushuU), RCS/Kyo (KyushuU)
20 7434333 7434334 T A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), SBN/Ygl (MCW), DOB/Oda (KyushuU), F344/DuCrlCrlj (KyushuU), F344/NSlc (KyushuU), F344/Stm (KyushuU), SS/JrHsdMcwi (MCW)
20 7434334 7434335 C G snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), ZFDM (KyushuU), F344/DuCrlCrlj (KyushuU), F344/NSlc (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), DOB/Oda (KyushuU), IS/Kyo (KyushuU)
20 7434339 7434340 G A snv SDLEF7/Barth (UDEL), ZFDM (KyushuU), Crl:SD (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), LEC/Tj (KyushuU), F344/Jcl (KyushuU), BDIX/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX.Cg-Tal/NemOda (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), LE/OrlBarth (UDEL)
20 7434359 7434360 G C snv SBH/Ygl (MCW), BDIX.Cg-Tal/NemOda (KyushuU), BDIX/NemOda (KyushuU), HWY/Slc (KyushuU)
20 7434365 7434366 G A snv SDLEF7/Barth (UDEL)
20 7434380 7434381 G T snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), SBN/Ygl (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW)
20 7434383 7434384 T G snv F344/NSlc (KyushuU), F344/Stm (KyushuU), F344/Jcl (KyushuU), F344/DuCrlCrlj (KyushuU)
20 7434390 7434391 A T snv SDLEF7/Barth (UDEL)
20 7434392 7434393 G A snv Crl:SD (UDEL), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL)
20 7434404 7434405 G A snv COP/CrCrl (MCW & UW), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), ACI/EurMcwi (MCW), Crl:SD (UDEL), FHL/EurMcwi (MCW), SBN/Ygl (MCW)
20 7434409 7434410 G C snv SDLEF7/Barth (UDEL)
20 7434417 7434418 G A snv Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
20 7434420 7434421 A T snv SDLEF7/Barth (UDEL)
20 7435449 7435450 G A snv F344/NSlc (KyushuU), F344/DuCrlCrlj (KyushuU), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), F344/Stm (KyushuU)
20 7435450 7435451 C T snv FHH/EurMcwi (MCW), F344/Jcl (KyushuU), F344/DuCrlCrlj (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), SS/JrHsdMcwi (MCW)
20 7435472 7435473 A C snv FHL/EurMcwi (MCW), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), SBN/Ygl (MCW), SBH/Ygl (MCW)
20 7435485 7435486 G A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
20 7435533 7435534 C A snv FHH/EurMcwi (MCW)
20 7435537 7435538 C T snv FHH/EurMcwi (MCW)
20 7435544 7435545 G T snv SDLEF7/Barth (UDEL)
20 7435572 7435573 A G snv SDLEF7/Barth (UDEL), Crl:SD (UDEL), SBN/Ygl (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), LE/OrlBarth (UDEL)
20 7435602 7435603 G T snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW)
20 7435642 7435643 T C snv SR/JrHsd (MCW), SBN/Ygl (MCW), SDLEF7/Barth (UDEL), Crl:SD (UDEL), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW)
20 7435645 7435646 G C snv SS/JrHsdMcwi (MCW), SBN/Ygl (MCW), FHL/EurMcwi (MCW)
20 7435657 7435658 A G snv LE/OrlBarth (UDEL), Crl:SD (UDEL), SDLEF7/Barth (UDEL), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), SBN/Ygl (MCW), SBH/Ygl (MCW), GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW)
20 7435669 7435670 G A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), BDIX/NemOda (KyushuU), SBH/Ygl (MCW), SBN/Ygl (MCW), NIG-III/Hok (KyushuU), BN/SsNSlc (KyushuU), GH/OmrMcwi (MCW)
20 7435676 7435677 G T snv KFRS3B/Kyo (KyushuU), LEC/Tj (KyushuU), RCS/Kyo (KyushuU), BUF/MNa (KyushuU), Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL), SBN/Ygl (MCW), SBH/Ygl (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW)
20 7435686 7435687 C A snv Crl:SD (UDEL)
20 7435696 7435697 C T snv GH/OmrMcwi (MCW), F344/Jcl (KyushuU), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NSlc (KyushuU)
20 7435698 7435699 C A snv LEC/Tj (KyushuU), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL)
20 7435810 7435811 C T snv Crl:SD (UDEL), LE/OrlBarth (UDEL), SDLEF7/Barth (UDEL)
20 7435822 7435823 A C snv SDLEF7/Barth (UDEL)
20 7435828 7435829 T A snv SDLEF7/Barth (UDEL), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), GH/OmrMcwi (MCW)
20 7435858 7435859 G T snv ZF (KyushuU)
20 7435861 7435862 C A snv BDIX.Cg-Tal/NemOda (KyushuU), DOB/Oda (KyushuU), BDIX/NemOda (KyushuU), IS-Tlk/Kyo (KyushuU), NIG-III/Hok (KyushuU), IS/Kyo (KyushuU), ZFDM (KyushuU)
20 7436118 7436119 A G snv FHL/EurMcwi (MCW), SBN/Ygl (MCW), BUF/MNa (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU)
20 7436140 7436141 C G snv BN/SsNSlc (KyushuU)
20 7436352 7436353 C G snv KFRS3B/Kyo (KyushuU), LEC/Tj (KyushuU), F344/Stm (KyushuU), ZF (KyushuU), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), IS-Tlk/Kyo (KyushuU), SR/JrHsd (MCW), LE/OrlBarth (UDEL), BUF/MNa (KyushuU), F344/DuCrlCrlj (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), SBN/Ygl (MCW)
20 7436363 7436364 G A snv F344/Stm (KyushuU), F344/NSlc (KyushuU), SR/JrHsd (MCW), F344/DuCrlCrlj (KyushuU)
20 7436375 7436376 C G snv FHH/EurMcwi (MCW), ZF (KyushuU), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SDLEF7/Barth (UDEL), IS/Kyo (KyushuU), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), HTX/Kyo (KyushuU), RCS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), LEC/Tj (KyushuU), DOB/Oda (KyushuU), KFRS3B/Kyo (KyushuU), FHL/EurMcwi (MCW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 5021826 5021827 C A snv LCR/2Mco (UMich), LCR/1Mco (UMich), HCR/2Mco (UMich)
20 5021831 5021832 A T snv LCR/1Mco (UMich), LCR/2Mco (UMich), HCR/2Mco (UMich)
20 5021846 5021847 C G snv FHL/EurMcwi (MCW)
20 5021876 5021877 C T snv MR/N (KNAW)
20 5021877 5021878 G T snv HCR/2Mco (UMich), LCR/1Mco (UMich)
20 5022115 5022116 G A snv FHL/EurMcwi (MCW), MR/N (KNAW), FHL/EurMcwi (ICL), LE/Stm (ICL), LH/MavRrrc (ICL), MHS/Gib (ICL), SBH/Ygl (ICL), SBN/Ygl (ICL), WAG/Rij (ICL), HCR/1Mco (UMich), LCR/1Mco (UMich), HCR/2Mco (UMich), LCR/2Mco (UMich)
20 5022179 5022180 A C snv SHRSP/Gcrc (MDC)
20 5022245 5022246 G A snv MR/N (KNAW)
20 5022268 5022269 A G snv HCR/2Mco (UMich), LCR/2Mco (UMich)
20 5022299 5022300 A G snv GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
20 5022325 5022326 G C snv HCR/1Mco (UMich), LCR/2Mco (UMich), HCR/2Mco (UMich), LCR/1Mco (UMich)
20 5022570 5022571 A T snv WN/N (KNAW)
20 5022581 5022582 G A snv COP/CrCrl (MCW & UW), SS/JrHsdMcwi (MCW), FHH/EurMcwi (MDC), ACI/EurMcwi (MCW), FHL/EurMcwi (MCW)
20 5022653 5022654 C A snv HCR/2Mco (UMich)
20 5022660 5022661 C T snv M520/N (KNAW)
20 5022665 5022666 A G snv LCR/2Mco (UMich), FHL/EurMcwi (MCW), HCR/2Mco (UMich)
20 5022677 5022678 T A snv COP/CrCrl (MCW & UW)
20 5022679 5022680 T G snv COP/CrCrl (MCW & UW)
20 5022681 5022682 C T snv ACI/N (KNAW)
20 5022690 5022691 T A snv COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW)
20 5022691 5022692 C G snv COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), FHL/EurMcwi (MCW)
20 5022696 5022697 G A snv LCR/1Mco (UMich), WN/N (KNAW), WKY/N (KNAW), MR/N (KNAW), M520/N (KNAW), LCR/2Mco (UMich), F344/NRrrc (KNAW), LE/Stm (KNAW), BUF/N (KNAW), ACI/N (KNAW)
20 5022696 5022697 G T snv WKY/N (KNAW)
20 5022716 5022717 G C snv LCR/2Mco (UMich), HCR/1Mco (UMich), LCR/1Mco (UMich)
20 5022737 5022738 G T snv COP/CrCrl (MCW & UW), HCR/2Mco (UMich), HCR/1Mco (UMich), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW)
20 5022740 5022741 T G snv F344/NRrrc (KNAW)
20 5022761 5022762 G A snv HCR/2Mco (UMich), LCR/1Mco (UMich), COP/CrCrl (MCW & UW), SS/JrHsdMcwi (MDC), SHR/OlaIpcv (ICL), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), FHL/EurMcwi (MCW), ACI/EurMcwi (MCW)
20 5022766 5022767 G T snv LCR/1Mco (UMich)
20 5022771 5022772 G A snv COP/CrCrl (MCW & UW)
20 5022776 5022777 T C snv M520/N (KNAW), LE/Stm (KNAW)
20 5022784 5022785 A T snv COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW)
20 5023807 5023808 C T snv SS/JrHsdMcwi (MCW), LCR/2Mco (UMich), HCR/2Mco (UMich), HCR/1Mco (UMich), WAG/Rij (ICL), SR/JrHsd (ICL), SHR/NHsd (ICL), F344/NCrl (ICL), BBDP/WorN (ICL)
20 5023842 5023843 G A snv HCR/1Mco (UMich), SR/JrHsd (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), LCR/1Mco (UMich), HCR/2Mco (UMich)
20 5023879 5023880 C G snv FHH/EurMcwi (MCW)
20 5023890 5023891 C A snv FHH/EurMcwi (MCW)
20 5023894 5023895 C T snv FHH/EurMcwi (MCW)
20 5023921 5023922 C T snv FHH/EurMcwi (MCW)
20 5023929 5023930 A G snv FHH/EurMcwi (MCW), ACI/EurMcwi (MCW)
20 5023995 5023996 C G snv FHH/EurMcwi (MDC)
20 5023999 5024000 T C snv FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), SR/JrHsd (MCW)
20 5024002 5024003 G C snv FHL/EurMcwi (MCW), SR/JrHsd (MCW)
20 5024014 5024015 A G snv GH/OmrMcwi (MCW), HCR/2Mco (UMich), LCR/1Mco (UMich), HCR/1Mco (UMich), WKY/NHsd (ICL), WKY/Gcrc (ICL), WKY/NCrl (ICL), SS/JrHsdMcwi (ICL), SS/Jr (ICL), SR/JrHsd (ICL), SHRSP/Gcrc (ICL), SHR/OlaIpcv (ICL), SBN/Ygl (ICL), SBH/Ygl (ICL), MNS/Gib (ICL), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), FHH/EurMcwi (MDC), SHRSP/Gcrc (MDC), COP/CrCrl (MCW & UW), LCR/2Mco (UMich), ACI/EurMcwi (ICL), F344/NCrl (ICL), FHH/EurMcwi (ICL), FHL/EurMcwi (ICL), GK/Ox (ICL), LE/Stm (ICL), LH/MavRrrc (ICL), LL/MavRrrc (ICL), LN/MavRrrc (ICL), MHS/Gib (ICL)
20 5024026 5024027 G A snv FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW)
20 5024033 5024034 G T snv FHH/EurMcwi (MCW), FHL/EurMcwi (MCW)
20 5024053 5024054 C T snv SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), ACI/N (KNAW), F344/NRrrc (KNAW), GH/OmrMcwi (MCW), HCR/1Mco (UMich), ACI/EurMcwi (MCW), HCR/2Mco (UMich), LCR/1Mco (UMich)
20 5024185 5024186 T A snv GH/OmrMcwi (MCW)
20 5024218 5024219 C A snv FHL/EurMcwi (MCW)
20 5024234 5024235 G C snv GH/OmrMcwi (MCW)
20 5024475 5024476 A G snv FHL/EurMcwi (MCW)
20 5024497 5024498 C T snv FHH/EurMcwi (MCW)
20 5024709 5024710 C G snv FHL/EurMcwi (MCW), SR/JrHsd (MCW), FHH/EurMcwi (MCW)
20 5024720 5024721 G A snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
20 5024732 5024733 C G snv FHH/EurMcwi (MCW), FHL/EurMcwi (MCW)
20 5024741 5024742 A G snv HCR/1Mco (UMich), HCR/2Mco (UMich), LCR/2Mco (UMich)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 4871027 4871028 A T snv DA/OlaHsd (2019)
20 4871039 4871040 C A snv DA/OlaHsd (2019)
20 4871324 4871325 C A snv LEW/Crl (2019), WN/N (2020), WKY/N (2020), WKY/NCrl (2019)
20 4871339 4871340 C T snv LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020)
20 4871344 4871345 T C snv ACI/EurMcwi (2019), WN/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), MR/N (2020), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), ACI/N (2020)
20 4871441 4871442 G A snv WKY/N (2020), LEW/Crl (2019)
20 4871479 4871480 G T snv GK/FarMcwi (2019)
20 4871482 4871483 A G snv FXLE16/Stm (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), DA/OlaHsd (2019), F344/Stm (2019), FHH/EurMcwi (2019), LEXF4/Stm (2020)
20 4871495 4871496 A G snv BXH2/CubMcwi (2020), F344/DuCrl (2019), HXB2/IpcvMcwi (2019), PVG/Seac (2019)
20 4871515 4871516 A G snv WN/N (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), SR/JrHsd (2020), SHRSP/A3NCrl (2019), M520/N (2020), ACI/EurMcwi (2019), ACI/N (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), FXLE16/Stm (2020), LEW/Crl (2019), LEXF1C/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020)
20 4871517 4871518 G T snv WKY/NCrl (2019)
20 4871541 4871542 G C snv PVG/Seac (2019), MWF/Hsd (2019), M520/NRrrcMcwi (2019)
20 4871544 4871545 C A snv ACI/EurMcwi (2019), SHRSP/A3NCrl (2019)
20 4871548 4871549 G A snv M520/NRrrcMcwi (2019), MWF/Hsd (2019), PVG/Seac (2019)
20 4871822 4871823 C A snv MWF/Hsd (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019)
20 4871861 4871862 A G snv BUF/N (2020), WKY/NCrl (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), HXB2/IpcvMcwi (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), BXH2/CubMcwi (2020)
20 4871862 4871863 C T snv ACI/EurMcwi (2019), WN/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), M520/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), BXH2/CubMcwi (2020)
20 4871877 4871878 C T snv ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), HXB2/IpcvMcwi (2019), WN/N (2020), LEW/Crl (2019), M520/NRrrcMcwi (2019), MR/N (2020), PVG/Seac (2019), WKY/NCrl (2019), WKY/N (2020), HXB31/IpcvMcwi (2019)
20 4871886 4871887 T A snv LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), BXH2/CubMcwi (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020)
20 4871887 4871888 C G snv GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), F344/Stm (2019), F344/NCrl (2019), F344/DuCrl (2019), BXH2/CubMcwi (2020), SS/JrHsdMcwi (2019), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), LL/MavRrrcAek (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), LEW/Crl (2019), HXB31/IpcvMcwi (2019), FXLE18/Stm (2020)
20 4871892 4871893 G A snv MWF/Hsd (2019), PVG/Seac (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LEXF1A/Stm (2019), LEW/Crl (2019), HXB31/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), FXLE16/Stm (2020), FHH/EurMcwi (2019), DA/OlaHsd (2019), WN/N (2020), BUF/N (2020), ACI/N (2020), ACI/EurMcwi (2019), BXH2/CubMcwi (2020)
20 4871912 4871913 G C snv DA/OlaHsd (2019), MR/N (2020), M520/NRrrcMcwi (2019)
20 4871918 4871919 G A snv WAG/RijCrl (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), LEXF4/Stm (2020), FXLE16/Stm (2020), BUF/N (2020), LE/Stm (2019)
20 4871919 4871920 C T snv SS/JrHsdMcwi (2019), WKY/NCrl (2019), WN/N (2020), ACI/EurMcwi (2019), ACI/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), M520/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020)
20 4871933 4871934 G T snv SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), HXB2/IpcvMcwi (2019)
20 4871936 4871937 T G snv LEXF2B/Stm (2019), LEXF1C/Stm (2019), F344/Stm (2019), F344/NCrl (2019), F344/DuCrl (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), SS/JrHsdMcwi (2019), FXLE18/Stm (2020)
20 4871943 4871944 A T snv MR/N (2020), PVG/Seac (2019), M520/NRrrcMcwi (2019), HXB31/IpcvMcwi (2019), FHH/EurMcwi (2019), DA/OlaHsd (2019), ACI/N (2020), ACI/EurMcwi (2019)
20 4871945 4871946 G A snv PVG/Seac (2019), MWF/Hsd (2019), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LE/Stm (2019), FHH/EurMcwi (2019), DA/OlaHsd (2019), ACI/N (2020)
20 4871957 4871958 G A snv HXB2/IpcvMcwi (2019), GK/FarMcwi (2019), FHH/EurMcwi (2019), DA/OlaHsd (2019), BXH2/CubMcwi (2020), BUF/N (2020), ACI/N (2020), SS/JrHsdMcwi (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), PVG/Seac (2019), MWF/Hsd (2019), MR/N (2020), M520/N (2020), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LE/Stm (2019), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), WN/N (2020), M520/NRrrcMcwi (2019), WKY/NCrl (2019), WKY/N (2020)
20 4871970 4871971 G A snv ACI/N (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), LE/Stm (2019), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), MWF/Hsd (2019), PVG/Seac (2019)
20 4871973 4871974 A T snv ACI/EurMcwi (2019), ACI/N (2020), HXB31/IpcvMcwi (2019), FHH/EurMcwi (2019), DA/OlaHsd (2019)
20 4872002 4872003 C T snv BUF/N (2020), LE/Stm (2019), M520/N (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), LH/MavRrrcAek (2020)
20 4873210 4873211 A G snv ACI/EurMcwi (2019), ACI/N (2020), WN/N (2020), WKY/N (2020), WKY/NCrl (2019), SS/JrHsdMcwi (2019), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), PVG/Seac (2019), MWF/Hsd (2019), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), LEXF1C/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019)
20 4873239 4873240 C A snv MR/N (2020)
20 4873251 4873252 C A snv HXB2/IpcvMcwi (2019), GK/FarMcwi (2019), FHH/EurMcwi (2019), F344/Stm (2019), F344/N (2020), F344/NCrl (2019), F344/DuCrl (2019), DA/OlaHsd (2019), BXH2/CubMcwi (2020), ACI/EurMcwi (2019), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), MWF/Hsd (2019), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LL/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LEXF3/Stm (2020), HXB31/IpcvMcwi (2019)
20 4873363 4873364 C T snv SR/JrHsd (2020), WAG/RijCrl (2020), MWF/Hsd (2019)
20 4873375 4873376 A C snv WAG/RijCrl (2020), MWF/Hsd (2019)
20 4873381 4873382 T A snv MWF/Hsd (2019), WAG/RijCrl (2020)
20 4873905 4873906 C G snv ACI/EurMcwi (2019), F344/DuCrl (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019),