Imported Disease Annotations - ClinVarObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Lta | Rat | leprosy | | ISO | RGD:1345394 | 8554872 | ClinVar Annotator: match by term: Leprosy, early-onset, susceptibility to | ClinVar | PMID:15052269|PMID:17353895 | Lta | Rat | megacolon | | ISO | RGD:1345394 | 8554872 | ClinVar Annotator: match by term: Megacolon | ClinVar | PMID:21681106 | Lta | Rat | myocardial infarction | | ISO | RGD:1345394 | 8554872 | ClinVar Annotator: match by term: Myocardial infarction, susceptibility to | ClinVar | PMID:12426569|PMID:12746914|PMID:14681301|PMID:15266304 | Lta | Rat | proteasome-associated autoinflammatory syndrome 1 | | ISO | RGD:1345394 | 8554872 | ClinVar Annotator: match by term: Proteasome-associated autoinflammatory syndrome 1 | ClinVar | PMID:28492532 | Lta | Rat | psoriatic arthritis | | ISO | RGD:1345394 | 8554872 | ClinVar Annotator: match by term: Psoriatic arthritis, susceptibility to | ClinVar | PMID:12426569|PMID:12746914|PMID:14681301 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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References
References - curated
| # | Reference Title | Reference Citation |
| 1. | Tumor necrosis factor beta gene polymorphisms in Graves' disease. | Badenhoop K, etal., J Clin Endocrinol Metab. 1992 Feb;74(2):287-91. |
| 2. | Association between genetic variants in the tumour necrosis factor/lymphotoxin alpha/lymphotoxin beta locus and primary Sjogren's syndrome in Scandinavian samples. | Bolstad AI, etal., Ann Rheum Dis. 2012 Jun;71(6):981-8. doi: 10.1136/annrheumdis-2011-200446. Epub 2012 Jan 30. |
| 3. | TNFA-TNFB haplotypes modify susceptibility to type I diabetes mellitus independently of HLA class II in a Moroccan population. | Bouqbis L, etal., Tissue Antigens. 2003 Jan;61(1):72-9. |
| 4. | Tumour necrosis factor beta alleles and hyperinsulinaemia in coronary artery disease. | Braun J, etal., Eur J Clin Invest. 1998 Jul;28(7):538-42. |
| 5. | Lack of association between atopic asthma and the tumor necrosis factor alpha-308 gene polymorphism in a Czech population. | Buckova D, etal., J Investig Allergol Clin Immunol. 2002;12(3):192-7. |
| 6. | Polymorphism in tumor necrosis factor genes associated with mucocutaneous leishmaniasis. | Cabrera M, etal., J Exp Med. 1995 Nov 1;182(5):1259-64. |
| 7. | Eighteen-month-old Fischer 344 rats fed a spinach-enriched diet show improved delay classical eyeblink conditioning and reduced expression of tumor necrosis factor alpha (TNFalpha ) and TNFbeta in the cerebellum. | Cartford MC, etal., J Neurosci 2002 Jul 15;22(14):5813-6. |
| 8. | Analysis of a Chinese population suggests that the TNFB gene is not a susceptibility gene for Graves' disease. | Cavan DA, etal., Hum Immunol. 1994 Jun;40(2):135-7. |
| 9. | Ancestral haplotype 8.1 and lung disease severity in European cystic fibrosis patients. | Corvol H, etal., J Cyst Fibros. 2012 Jan;11(1):63-7. Epub 2011 Oct 10. |
| 10. | Differential expression of cytokines in the rat heart in response to sustained volume overload. | Dai RP, etal., Eur J Heart Fail. 2004 Oct;6(6):693-703. |
| 11. | High IL-6 and low IL-10 in the central nervous system are associated with protracted relapsing EAE in DA rats. | Diab A, etal., J Neuropathol Exp Neurol. 1997 Jun;56(6):641-50. |
| 12. | Genes of the class II and class III major histocompatibility complex are associated with typhoid fever in Vietnam. | Dunstan SJ, etal., J Infect Dis. 2001 Jan 15;183(2):261-268. doi: 10.1086/317940. Epub 2000 Dec 21. |
| 13. | Distinct roles for lymphotoxin-alpha and tumor necrosis factor in the control of Leishmania donovani infection. | Engwerda CR, etal., Am J Pathol. 2004 Dec;165(6):2123-33. |
| 14. | Locally up-regulated lymphotoxin alpha, not systemic tumor necrosis factor alpha, is the principle mediator of murine cerebral malaria. | Engwerda CR, etal., J Exp Med. 2002 May 20;195(10):1371-7. |
| 15. | In situ localization of TNFalpha/beta, TACE and TNF receptors TNF-R1 and TNF-R2 in control and LPS-treated lung tissue. | Ermert M, etal., Cytokine. 2003 May;22(3-4):89-100. |
| 16. | The TNF-beta gene Nco I polymorphism is not associated with hypertriglyceridemia or insulin resistance in lean and obese subjects. | Fernandez-Real JM, etal., Biochem Biophys Res Commun. 1997 Jul 30;236(3):829-32. |
| 17. | Influence of metabolic and genetic factors on tumour necrosis factor-alpha and lymphotoxin-alpha production in insulin-dependent diabetes mellitus. | Feugeas JP, etal., Diabetes Metab. 1997 Sep;23(4):295-301. |
| 18. | Polymorphisms in tumor necrosis factor and lymphotoxin A in tuberculosis without and with response to treatment. | Garcia-Elorriaga G, etal., Inflammation. 2010 Aug;33(4):267-75. |
| 19. | -308GA and TNFB polymorphisms in acute respiratory distress syndrome. | Gong MN, etal., Eur Respir J. 2005 Sep;26(3):382-9. |
| 20. | The common T60N polymorphism of the lymphotoxin-alpha gene is associated with type 2 diabetes and other phenotypes of the metabolic syndrome. | Hamid YH, etal., Diabetologia. 2005 Mar;48(3):445-51. Epub 2005 Feb 24. |
| 21. | A clinical feature associated with polymorphisms of the TNF region in Japanese patients with palmoplantar pustulosis. | Hashigucci K, etal., Hum Immunol. 2003 May;64(5):530-7. |
| 22. | Association of a lymphotoxin-alpha gene polymorphism and atopic asthma in Taiwanese children. | Huang SC, etal., Pediatr Neonatol. 2008 Apr;49(2):30-4. |
| 23. | Histocompatibility leucocyte antigens and closely linked immunomodulatory genes in autoimmune thyroid disease. | Hunt PJ, etal., Clin Endocrinol (Oxf). 2001 Oct;55(4):491-9. |
| 24. | Transmembrane tumor necrosis factor alpha is required for enteropathy and is sufficient to promote parasite expulsion in gastrointestinal helminth infection. | Ierna MX, etal., Infect Immun. 2009 Sep;77(9):3879-85. doi: 10.1128/IAI.01461-08. Epub 2009 Jun 29. |
| 25. | Anti-tumor necrosis factor antibody enhances allograft survival in rats. | Imagawa DK, etal., J Surg Res. 1990 Apr;48(4):345-8. |
| 26. | Cytokine production in the central nervous system of Lewis rats with experimental autoimmune encephalomyelitis: dynamics of mRNA expression for interleukin-10, interleukin-12, cytolysin, tumor necrosis factor alpha and tumor necrosis factor beta. | Issazadeh S, etal., J Neuroimmunol. 1995 Sep;61(2):205-12. |
| 27. | The interaction of the polymorphisms in transporter of antigen peptides (TAP) and lymphotoxin alpha (LT-alpha) genes and atopic diseases in the Czech population. | Izakovicova Holla L, etal., Clin Exp Allergy. 2001 Sep;31(9):1418-23. |
| 28. | Cytokine gene polymorphisms and susceptibility to cutaneous leishmaniasis in Iranian patients. | Kamali-Sarvestani E, etal., Cytokine. 2006 Aug;35(3-4):159-65. Epub 2006 Sep 6. |
| 29. | Duration of non-Insulin-dependent diabetes mellitus and the TNF-beta NcoI genotype as predictive factors in proliferative diabetic retinopathy. | Kankova K, etal., Ophthalmologica. 2001 Jul-Aug;215(4):294-8. |
| 30. | Association between the tumor necrosis factor locus and the clinical outcome of Leishmania chagasi infection. | Karplus TM, etal., Infect Immun. 2002 Dec;70(12):6919-25. |
| 31. | Tumor necrosis factor-alpha allele lymphotoxin-alpha+250 is associated with the presence and severity of placental inflammation among preterm births. | Kazzi SN, etal., Pediatr Res. 2004 Jul;56(1):94-8. Epub 2004 May 5. |
| 32. | Polymorphisms of tumor necrosis factor (TNF) alpha and beta genes in Korean patients with psoriasis. | Kim TG, etal., Arch Dermatol Res. 2003 Apr;295(1):8-13. Epub 2003 Mar 13. |
| 33. | Association of single nucleotide polymorphisms (SNPs) in TNF-LTA locus with breast cancer risk in Indian population. | Kohaar I, etal., Breast Cancer Res Treat. 2009 Mar;114(2):347-55. doi: 10.1007/s10549-008-0006-5. Epub 2008 Apr 14. |
| 34. | Lymphotoxin alpha-/- mice develop functionally impaired CD8+ T cell responses and fail to contain virus infection of the central nervous system. | Kumaraguru U, etal., J Immunol. 2001 Jan 15;166(2):1066-74. |
| 35. | Cloning and sequence analysis of the rat tumor necrosis factor-encoding genes. | Kwon J, etal., Gene 1993 Oct 15;132(2):227-36. |
| 36. | Association of the lymphotoxin-alpha gene Thr26Asn polymorphism with severity of coronary atherosclerosis. | Laxton R, etal., Genes Immun. 2005 Sep;6(6):539-41. |
| 37. | [Association of cytokine gene polymorphisms with cachexia related to sporadic female breast cancer]. | Li FN, etal., Zhonghua Yi Xue Za Zhi. 2008 May 27;88(20):1402-4. |
| 38. | Association between LTA, TNF and AGER polymorphisms and late diabetic complications. | Lindholm E, etal., PLoS One. 2008 Jun 25;3(6):e2546. |
| 39. | Effects of intracarotid and intravenous infusion of human TNF and LT on established intracerebral rat gliomas. | Liu SK, etal., Lymphokine Cytokine Res. 1991 Jun;10(3):189-94. |
| 40. | T helper 1 cytokine mRNA is increased in spontaneously regressing primary melanomas. | Lowes MA, etal., J Invest Dermatol. 1997 Jun;108(6):914-9. |
| 41. | Polymorphisms in the IL-4, IL-4 receptor alpha chain, TNF-alpha, and lymphotoxin-alpha genes and risk of asthma in Hong Kong Chinese adults. | Mak JC, etal., Int Arch Allergy Immunol. 2007;144(2):114-22. Epub 2007 May 24. |
| 42. | Changes in urinary bladder cytokine mRNA and protein after cyclophosphamide-induced cystitis. | Malley SE and Vizzard MA, Physiol Genomics. 2002;9(1):5-13. |
| 43. | Variation in the lymphotoxin-alpha/tumor necrosis factor locus modifies risk of erythema nodosum in sarcoidosis. | McDougal KE, etal., J Invest Dermatol. 2009 Aug;129(8):1921-6. doi: 10.1038/jid.2008.456. Epub 2009 Feb 19. |
| 44. | Polymorphism of the tumor necrosis factor genes in patients with dermatitis herpetiformis. | Messer G, etal., Dermatology. 1994;189 Suppl 1:135-7. |
| 45. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
| 46. | Haplotype analysis of a 100 kb region spanning TNF-LTA identifies a polymorphism in the LTA promoter region that is associated with atopic asthma susceptibility in Japan. | Migita O, etal., Clin Exp Allergy. 2005 Jun;35(6):790-6. |
| 47. | Human LT-alpha-mediated resistance to autoimmune diabetes is induced in NOD, but not NOD-scid, mice and abrogated by IL-12. | Miyaguchi S, etal., Clin Immunol. 2001 Jan;98(1):119-24. |
| 48. | Association of tumour necrosis factor-alpha, lymphotoxin-alpha and HLA-DRB1 gene polymorphisms with Lofgren's syndrome in Czech patients with sarcoidosis. | Mrazek F, etal., Tissue Antigens. 2005 Feb;65(2):163-71. |
| 49. | Determination of lymphotoxin-alpha levels in patients with psoriatic arthritis undergoing etanercept treatment. | Murdaca G, etal., J Interferon Cytokine Res. 2012 Jun;32(6):277-9. doi: 10.1089/jir.2011.0120. Epub 2012 Apr 5. |
| 50. | An association study in essential hypertension using functional polymorphisms in lymphotoxin-alpha gene. | Nakayama T, etal., Am J Hypertens. 2004 Nov;17(11 Pt 1):1045-9. |
| 51. | Regulatory substances produced by lymphocytes. II. Lymphotoxin in the rat. | Namba Y and Waksman BH, J Immunol. 1975 Oct;115(4):1018-22. |
| 52. | Electronic Transfer of LocusLink and RefSeq Data | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 53. | Lymphotoxin-alpha polymorphisms and the risk of endometrial cancer in Japanese subjects. | Niwa Y, etal., Gynecol Oncol. 2007 Mar;104(3):586-90. Epub 2006 Oct 11. |
| 54. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
| 55. | Functional SNPs in the lymphotoxin-alpha gene that are associated with susceptibility to myocardial infarction. | Ozaki K, etal., Nat Genet. 2002 Dec;32(4):650-4. Epub 2002 Nov 11. |
| 56. | TNF-alpha and TNF-beta gene polymorphisms in systemic sclerosis. | Pandey JP and Takeuchi F, Hum Immunol. 1999 Nov;60(11):1128-30. |
| 57. | Polymorphisms of tumour necrosis factors A and B in breast cancer. | Park KS, etal., Eur J Immunogenet. 2002 Feb;29(1):7-10. |
| 58. | Influence of allergy on clinical, immunological and histological characteristics of nasal polyposis. | Peric A, etal., B-ENT. 2012;8(1):25-32. |
| 59. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
| 60. | PID Annotation Import Pipeline | Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
| 61. | Induction of TNF alpha and TNF beta gene expression in rat cardiac transplants during allograft rejection. | Pizarro TT, etal., Transplantation. 1993 Aug;56(2):399-404. |
| 62. | Effects of NF-kappaB oligonucleotide "decoys" on gene expression in P7 rat hippocampus after hypoxia/ischemia. | Qiu J, etal., J Neurosci Res. 2004 Jul 1;77(1):108-18. |
| 63. | Essential role of lymph nodes in contact hypersensitivity revealed in lymphotoxin-alpha-deficient mice. | Rennert PD, etal., J Exp Med. 2001 Jun 4;193(11):1227-38. |
| 64. | GOA pipeline | RGD automated data pipeline |
| 65. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 66. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
| 67. | Comprehensive gene review and curation | RGD comprehensive gene curation |
| 68. | A strong genetic association between the tumor necrosis factor locus and proliferative vitreoretinopathy: the retina 4 project. | Rojas J, etal., Ophthalmology. 2010 Dec;117(12):2417-2423.e1-2. doi: 10.1016/j.ophtha.2010.03.059. Epub 2010 Jul 21. |
| 69. | Loss of lymphotoxin-alpha but not tumor necrosis factor-alpha reduces atherosclerosis in mice. | Schreyer SA, etal., J Biol Chem. 2002 Apr 5;277(14):12364-8. Epub 2002 Jan 23. |
| 70. | A role for lymphotoxin in primary Sjogren's disease. | Shen L, etal., J Immunol. 2010 Nov 15;185(10):6355-63. doi: 10.4049/jimmunol.1001520. Epub 2010 Oct 15. |
| 71. | Independent association of tumor necrosis factor polymorphism with type 1 diabetes susceptibility. | Shin HD, etal., Ann N Y Acad Sci. 2008 Dec;1150:76-85. |
| 72. | Modulation of type 1 diabetes susceptibility by tumor necrosis factor alpha -308 G/A and lymphotoxin alpha +249 A/G haplotypes and lack of linkage disequilibrium with predisposing DQB1-DRB1 haplotypes in Bahraini patients. | Stayoussef M, etal., Clin Vaccine Immunol. 2008 Feb;15(2):379-81. Epub 2007 Nov 7. |
| 73. | Decreased mortality associated with statin treatment in patients with acute myocardial infarction and lymphotoxin-alpha C804A polymorphism. | Suna S, etal., Atherosclerosis. 2013 Apr;227(2):373-9. doi: 10.1016/j.atherosclerosis.2013.01.020. Epub 2013 Jan 25. |
| 74. | Prevention of type I diabetes with lymphotoxin in BB rats. | Takahashi K, etal., Clin Immunol Immunopathol. 1993 Dec;69(3):318-23. |
| 75. | Tumor necrosis factor gene polymorphism in chronic sinusitis. | Takeuchi K, etal., Laryngoscope. 2000 Oct;110(10 Pt 1):1711-4. |
| 76. | Prognostic significance of tumor necrosis factors and their receptors in nonsmall cell lung carcinoma. | Tran TA, etal., Cancer. 1998 Jul 15;83(2):276-82. |
| 77. | Thyroid hormone induces cerebellar astrocytes and C6 glioma cells to secrete mitogenic growth factors. | Trentin AG, etal., Am J Physiol Endocrinol Metab. 2001 Nov;281(5):E1088-94. |
| 78. | Candidate genes of cerebrovascular disease and sudden sensorineural hearing loss. | Um JY, etal., Clin Appl Thromb Hemost. 2010 Oct;16(5):559-62. doi: 10.1177/1076029609348313. Epub 2009 Oct 14. |
| 79. | TNF-alpha and TNF-beta gene polymorphisms in cerebral infarction. | Um JY, etal., J Mol Neurosci. 2003;21(2):167-71. |
| 80. | A tumor necrosis factor-beta polymorphism associated with hypertriglyceridemia in non-insulin-dependent diabetes mellitus. | Vendrell J, etal., Metabolism. 1995 Jun;44(6):691-4. |
| 81. | Salicylate-induced degeneration of cochlea spiral ganglion neurons-apoptosis signaling. | Wei L, etal., Neuroscience. 2010 Jun 16;168(1):288-99. Epub 2010 Mar 15. |
| 82. | Lack of association of polymorphisms of the lymphotoxin alpha gene with myocardial infarction in Japanese. | Yamada A, etal., J Mol Med. 2004 Jul;82(7):477-83. Epub 2004 Jun 3. |
| 83. | Tumor necrosis factor-beta is associated with thymic apoptosis during acute rejection. | Yamaguchi Y, etal., Transplantation. 1998 Oct 15;66(7):894-902. |
| 84. | Combination of multiple genetic risk factors is synergistically associated with carotid atherosclerosis in Japanese subjects with type 2 diabetes. | Yamasaki Y, etal., Diabetes Care. 2006 Nov;29(11):2445-51. |
| 85. | Relationship between polymorphisms 804C/A and 252A/G of lymphotoxin-alpha gene and -308G/A of tumor necrosis factor alpha gene and diabetic retinopathy in Japanese patients with type 2 diabetes mellitus. | Yoshioka K, etal., Metabolism. 2006 Oct;55(10):1406-10. |
| 86. | Large-scale studies of the association between variation at the TNF/LTA locus and susceptibility to type 2 diabetes. | Zeggini E, etal., Diabetologia. 2005 Oct;48(10):2013-7. Epub 2005 Aug 18. |
Additional References at PubMed
| PMID:7636227 | PMID:8171322 | PMID:9368616 | PMID:9565643 | PMID:9834074 | PMID:10415063 | PMID:15060004 | PMID:20092780 | PMID:33441130 | PMID:35776111 |
Genomics
Comparative Map Data
| Lta (Rattus norvegicus - Norway rat) |
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| LTA (Homo sapiens - human) |
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| Lta (Mus musculus - house mouse) |
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| Lta (Chinchilla lanigera - long-tailed chinchilla) |
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| LTA (Pan paniscus - bonobo/pygmy chimpanzee) |
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| LTA (Canis lupus familiaris - dog) |
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| Lta (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| LTA (Sus scrofa - pig) |
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| LTA (Chlorocebus sabaeus - green monkey) |
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| Lta (Heterocephalus glaber - naked mole-rat) |
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Variants
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Variants in Lta
32 total Variants 
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