Rhobtb1 (Rho-related BTB domain containing 1) - Rat Genome Database

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Gene: Rhobtb1 (Rho-related BTB domain containing 1) Rattus norvegicus
Analyze
Symbol: Rhobtb1
Name: Rho-related BTB domain containing 1
RGD ID: 1306871
Description: Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to be active in several cellular components, including cytoplasmic vesicle; cytoskeleton; and plasma membrane. Orthologous to human RHOBTB1 (Rho related BTB domain containing 1); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102555066; LOC309722; rho-related BTB domain-containing protein 1; uncharacterized LOC102555066
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82019,326,197 - 19,455,182 (-)NCBIGRCr8
mRatBN7.22019,327,142 - 19,456,121 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2019,327,155 - 19,403,012 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2020,056,110 - 20,131,978 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02019,408,581 - 19,484,447 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02019,883,789 - 19,959,657 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02020,638,579 - 20,715,437 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2020,638,579 - 20,713,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02022,756,929 - 22,837,644 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42020,089,811 - 20,166,069 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12020,105,716 - 20,146,672 (-)NCBI
Celera2020,702,887 - 20,778,657 (-)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
8-Br-cAMP  (ISO)
acetaldehyde  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cefaloridine  (EXP)
chloroprene  (ISO)
ciguatoxin CTX1B  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
hydrogen cyanide  (ISO)
lipopolysaccharide  (ISO)
metformin  (ISO)
N-acetyl-L-cysteine  (ISO)
nevirapine  (ISO)
nickel sulfate  (ISO)
niclosamide  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium cyanide  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
tremolite asbestos  (ISO)
triphenyl phosphate  (EXP,ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
zearalenone  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:29053138  


Genomics

Comparative Map Data
Rhobtb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82019,326,197 - 19,455,182 (-)NCBIGRCr8
mRatBN7.22019,327,142 - 19,456,121 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2019,327,155 - 19,403,012 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2020,056,110 - 20,131,978 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02019,408,581 - 19,484,447 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02019,883,789 - 19,959,657 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02020,638,579 - 20,715,437 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2020,638,579 - 20,713,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02022,756,929 - 22,837,644 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42020,089,811 - 20,166,069 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12020,105,716 - 20,146,672 (-)NCBI
Celera2020,702,887 - 20,778,657 (-)NCBICelera
Cytogenetic Map20p11NCBI
RHOBTB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381060,860,860 - 61,001,967 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1060,869,438 - 61,001,440 (-)EnsemblGRCh38hg38GRCh38
GRCh371062,629,196 - 62,761,198 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361062,299,202 - 62,431,204 (-)NCBINCBI36Build 36hg18NCBI36
Build 341062,299,205 - 62,430,735NCBI
Celera1055,895,951 - 56,028,156 (-)NCBICelera
Cytogenetic Map10q21.2NCBI
HuRef1056,618,425 - 56,750,282 (-)NCBIHuRef
CHM1_11062,911,408 - 63,043,385 (-)NCBICHM1_1
T2T-CHM13v2.01061,726,193 - 61,858,729 (-)NCBIT2T-CHM13v2.0
Rhobtb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391068,987,106 - 69,127,621 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1068,987,264 - 69,127,621 (+)EnsemblGRCm39 Ensembl
GRCm381069,151,058 - 69,291,791 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1069,151,434 - 69,291,791 (+)EnsemblGRCm38mm10GRCm38
MGSCv371068,675,405 - 68,754,539 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361068,546,791 - 68,687,148 (+)NCBIMGSCv36mm8
Celera1070,309,641 - 70,381,742 (+)NCBICelera
Cytogenetic Map10B5.3NCBI
cM Map1036.04NCBI
Rhobtb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542514,299,035 - 14,360,759 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542514,299,128 - 14,366,732 (-)NCBIChiLan1.0ChiLan1.0
RHOBTB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2873,078,236 - 73,219,435 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11073,083,558 - 73,224,757 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01057,410,347 - 57,541,038 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11059,740,656 - 59,872,612 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1059,740,662 - 59,815,536 (-)Ensemblpanpan1.1panPan2
RHOBTB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1412,971,624 - 13,089,520 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl412,973,412 - 13,035,505 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha413,177,476 - 13,295,404 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0413,237,185 - 13,355,077 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl413,237,195 - 13,301,063 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1413,214,849 - 13,332,726 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0413,332,783 - 13,450,635 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0413,643,870 - 13,761,776 (-)NCBIUU_Cfam_GSD_1.0
Rhobtb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721368,014,268 - 68,142,246 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366142,103,101 - 2,230,444 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366142,101,175 - 2,230,441 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHOBTB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1464,326,461 - 64,465,281 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11464,326,461 - 64,465,331 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21469,414,894 - 69,473,132 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RHOBTB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1970,266,735 - 70,398,839 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl970,356,290 - 70,396,791 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604831,156,539 - 31,288,910 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rhobtb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247912,747,931 - 2,827,614 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247912,695,173 - 2,824,581 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rhobtb1
886 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:263
Count of miRNA genes:170
Interacting mature miRNAs:211
Transcripts:ENSRNOT00000000784
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat

Markers in Region
D20Uwm2  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82019,396,770 - 19,396,981 (+)Marker Load Pipeline
mRatBN7.22019,397,725 - 19,397,936 (+)MAPPERmRatBN7.2
Rnor_6.02020,707,842 - 20,708,052NCBIRnor6.0
Rnor_5.02022,826,192 - 22,826,402UniSTSRnor5.0
RGSC_v3.42020,160,783 - 20,160,993UniSTSRGSC3.4
RGSC_v3.12020,174,582 - 20,174,793RGD
Celera2020,773,371 - 20,773,581UniSTS
Cytogenetic Map20p11UniSTS
AI173445  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22019,327,207 - 19,327,353 (+)MAPPERmRatBN7.2
Rnor_6.02020,638,632 - 20,638,777NCBIRnor6.0
Rnor_5.02022,756,982 - 22,757,127UniSTSRnor5.0
RGSC_v3.42020,089,864 - 20,090,009UniSTSRGSC3.4
Celera2020,702,940 - 20,703,085UniSTS
Cytogenetic Map20p11UniSTS
RH133948  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82019,366,813 - 19,367,028 (+)Marker Load Pipeline
mRatBN7.22019,367,760 - 19,367,975 (+)MAPPERmRatBN7.2
Rnor_6.02020,678,218 - 20,678,432NCBIRnor6.0
Rnor_5.02022,796,568 - 22,796,782UniSTSRnor5.0
RGSC_v3.42020,130,412 - 20,130,626UniSTSRGSC3.4
Celera2020,743,442 - 20,743,656UniSTS
Cytogenetic Map20p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039098743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000000784   ⟹   ENSRNOP00000000784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2019,327,155 - 19,403,012 (-)Ensembl
Rnor_6.0 Ensembl2020,638,579 - 20,713,128 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087085   ⟹   ENSRNOP00000070070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2019,327,155 - 19,362,020 (-)Ensembl
Rnor_6.0 Ensembl2020,640,685 - 20,680,675 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112467   ⟹   ENSRNOP00000096863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2019,327,155 - 19,403,012 (-)Ensembl
RefSeq Acc Id: NM_001107622   ⟹   NP_001101092
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,402,057 (-)NCBI
mRatBN7.22019,327,142 - 19,403,012 (-)NCBI
Rnor_6.02020,638,579 - 20,713,128 (-)NCBI
Rnor_5.02022,756,929 - 22,837,644 (-)NCBI
RGSC_v3.42020,089,811 - 20,166,069 (-)RGD
Celera2020,702,887 - 20,778,657 (-)RGD
Sequence:
RefSeq Acc Id: XM_039098732   ⟹   XP_038954660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,401,451 (-)NCBI
mRatBN7.22019,328,755 - 19,402,407 (-)NCBI
RefSeq Acc Id: XM_039098733   ⟹   XP_038954661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,455,155 (-)NCBI
mRatBN7.22019,328,755 - 19,456,120 (-)NCBI
RefSeq Acc Id: XM_039098734   ⟹   XP_038954662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,455,182 (-)NCBI
mRatBN7.22019,329,261 - 19,456,121 (-)NCBI
RefSeq Acc Id: XM_039098735   ⟹   XP_038954663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,406,507 (-)NCBI
mRatBN7.22019,329,261 - 19,402,993 (-)NCBI
RefSeq Acc Id: XM_039098736   ⟹   XP_038954664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,406,507 (-)NCBI
mRatBN7.22019,328,755 - 19,403,008 (-)NCBI
RefSeq Acc Id: XM_039098737   ⟹   XP_038954665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,407,285 (-)NCBI
mRatBN7.22019,329,261 - 19,407,546 (-)NCBI
RefSeq Acc Id: XM_039098739   ⟹   XP_038954667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,394,693 (-)NCBI
mRatBN7.22019,329,261 - 19,372,576 (-)NCBI
RefSeq Acc Id: XM_039098740   ⟹   XP_038954668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,360,699 (-)NCBI
mRatBN7.22019,329,261 - 19,361,762 (-)NCBI
RefSeq Acc Id: XM_039098741   ⟹   XP_038954669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,363,941 (-)NCBI
mRatBN7.22019,329,261 - 19,367,743 (-)NCBI
RefSeq Acc Id: XM_039098743   ⟹   XP_038954671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,360,991 (-)NCBI
mRatBN7.22019,329,261 - 19,364,088 (-)NCBI
RefSeq Acc Id: XM_063279164   ⟹   XP_063135234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,407,285 (-)NCBI
RefSeq Acc Id: XM_063279165   ⟹   XP_063135235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82019,326,197 - 19,455,155 (-)NCBI
RefSeq Acc Id: NP_001101092   ⟸   NM_001107622
- UniProtKB: D3ZD37 (UniProtKB/TrEMBL),   A6JKT8 (UniProtKB/TrEMBL),   A0A8I6ATD4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000784   ⟸   ENSRNOT00000000784
Ensembl Acc Id: ENSRNOP00000070070   ⟸   ENSRNOT00000087085
RefSeq Acc Id: XP_038954661   ⟸   XM_039098733
- Peptide Label: isoform X1
- UniProtKB: D3ZD37 (UniProtKB/TrEMBL),   A6JKT8 (UniProtKB/TrEMBL),   A0A8I6ATD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954664   ⟸   XM_039098736
- Peptide Label: isoform X1
- UniProtKB: D3ZD37 (UniProtKB/TrEMBL),   A6JKT8 (UniProtKB/TrEMBL),   A0A8I6ATD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954660   ⟸   XM_039098732
- Peptide Label: isoform X1
- UniProtKB: D3ZD37 (UniProtKB/TrEMBL),   A6JKT8 (UniProtKB/TrEMBL),   A0A8I6ATD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954662   ⟸   XM_039098734
- Peptide Label: isoform X1
- UniProtKB: D3ZD37 (UniProtKB/TrEMBL),   A6JKT8 (UniProtKB/TrEMBL),   A0A8I6ATD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954665   ⟸   XM_039098737
- Peptide Label: isoform X1
- UniProtKB: D3ZD37 (UniProtKB/TrEMBL),   A6JKT8 (UniProtKB/TrEMBL),   A0A8I6ATD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954663   ⟸   XM_039098735
- Peptide Label: isoform X1
- UniProtKB: D3ZD37 (UniProtKB/TrEMBL),   A6JKT8 (UniProtKB/TrEMBL),   A0A8I6ATD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954667   ⟸   XM_039098739
- Peptide Label: isoform X1
- UniProtKB: D3ZD37 (UniProtKB/TrEMBL),   A6JKT8 (UniProtKB/TrEMBL),   A0A8I6ATD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954669   ⟸   XM_039098741
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ATD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954671   ⟸   XM_039098743
- Peptide Label: isoform X4
- UniProtKB: A0A8I6ATD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954668   ⟸   XM_039098740
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JWZ1 (UniProtKB/TrEMBL),   A0A8I6ATD4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096863   ⟸   ENSRNOT00000112467
RefSeq Acc Id: XP_063135235   ⟸   XM_063279165
- Peptide Label: isoform X1
- UniProtKB: A6JKT8 (UniProtKB/TrEMBL),   D3ZD37 (UniProtKB/TrEMBL),   A0A8I6ATD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135234   ⟸   XM_063279164
- Peptide Label: isoform X1
- UniProtKB: A6JKT8 (UniProtKB/TrEMBL),   D3ZD37 (UniProtKB/TrEMBL),   A0A8I6ATD4 (UniProtKB/TrEMBL)
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JWZ1-F1-model_v2 AlphaFold A0A0G2JWZ1 1-696 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306871 AgrOrtholog
BioCyc Gene G2FUF-3955 BioCyc
Ensembl Genes ENSRNOG00000000633 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000784.7 UniProtKB/TrEMBL
  ENSRNOT00000087085.2 UniProtKB/TrEMBL
  ENSRNOT00000112467.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
  Small_GTPase_Rho UniProtKB/TrEMBL
KEGG Report rno:309722 UniProtKB/TrEMBL
NCBI Gene 309722 ENTREZGENE
PANTHER PTHR24072 UniProtKB/TrEMBL
  PTHR24413:SF233 UniProtKB/TrEMBL
  RHO-RELATED BTB DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  SPECKLE-TYPE POZ PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  Ras UniProtKB/TrEMBL
PhenoGen Rhobtb1 PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000633 RatGTEx
SMART BTB UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JWZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATD4 ENTREZGENE, UniProtKB/TrEMBL
  A6JKT8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZD37 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Rhobtb1  Rho-related BTB domain containing 1  LOC102555066  uncharacterized LOC102555066  Data merged from RGD:7502898 737654 PROVISIONAL
2013-12-17 LOC102555066  uncharacterized LOC102555066      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Rhobtb1  Rho-related BTB domain containing 1   Rhobtb1_predicted  Rho-related BTB domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rhobtb1_predicted  Rho-related BTB domain containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED