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Gene: Lims1 (LIM zinc finger domain containing 1) Rattus norvegicus

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Symbol:

Lims1

Name:

LIM zinc finger domain containing 1

RGD ID:

1560732

Description:

Predicted to enable protein kinase binding activity and zinc ion binding activity. Predicted to be involved in several processes, including positive regulation of cell-substrate adhesion; positive regulation of signal transduction; and regulation of gene expression. Predicted to act upstream of or within several processes, including cell-matrix adhesion; negative regulation of cell population proliferation; and negative regulation of hepatocyte apoptotic process. Part of protein-containing complex. Orthologous to human LIMS1 (LIM zinc finger domain containing 1); PARTICIPATES IN integrin mediated signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LIM and senescent cell antigen-like domains 1; LIM and senescent cell antigen-like-containing domain protein 1; LIM-type zinc finger domains 1; LOC499443; Pinch1; RGD1560732; similar to LIM and senescent cell antigen-like domains 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

Lims1^{Tn(sb-T2/Bart3)2.169Mcwi}

Genetic Models:

F344-Lims1^{Tn(sb-T2/Bart3)2.169Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	26,851,364 - 26,961,607 (+)	NCBI		GRCr8
GRCr8 Ensembl	20	26,852,996 - 26,961,606 (+)	Ensembl		GRCr8 Ensembl
mRatBN7.2	20	26,309,833 - 26,418,511 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	26,309,895 - 26,418,500 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	27,370,767 - 27,418,134 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	26,757,119 - 26,804,483 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	27,505,048 - 27,552,462 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	27,895,981 - 28,004,767 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	27,954,433 - 28,002,082 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	29,715,580 - 29,824,252 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	37,349,188 - 37,397,427 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	27,819,971 - 27,867,155 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant distal hereditary motor neuronopathy 7 (ISO)

ectodermal dysplasia 10A (ISO)

ectodermal dysplasia 10B (ISO)

ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,6-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

4-vinylcyclohexene dioxide (ISO)

5-aza-2'-deoxycytidine (ISO)

5-azacytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aconitine (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bortezomib (ISO)

calcitriol (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

ethanol (ISO)

folic acid (ISO)

gentamycin (EXP)

hydrogen cyanide (ISO)

indometacin (ISO)

ivermectin (ISO)

lead diacetate (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

nitrates (ISO)

okadaic acid (ISO)

paracetamol (ISO)

phenobarbital (ISO)

phenylephrine (EXP)

poly(vinylpyrrolidone) (EXP)

potassium cyanide (ISO)

silver atom (EXP)

silver(0) (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

succimer (ISO)

sulfadimethoxine (EXP)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-cell adhesion (IBA,IEA,ISO)

cell-cell junction organization (IBA,IEA,ISO)

cell-matrix adhesion (ISO)

cellular response to transforming growth factor beta stimulus (ISO)

cholangiocyte proliferation (IEA,ISO)

chordate embryonic development (ISO)

epithelial to mesenchymal transition (ISO)

establishment of protein localization (ISO)

establishment or maintenance of cell polarity (ISO)

hepatocyte apoptotic process (ISO)

integrin-mediated signaling pathway (IEA,ISO)

negative regulation of cholangiocyte proliferation (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of hepatocyte apoptotic process (ISO)

negative regulation of hepatocyte proliferation (ISO)

negative regulation of neural precursor cell proliferation (IEA,ISO)

neural precursor cell proliferation (IEA,ISO)

positive regulation of canonical NF-kappaB signal transduction (ISO)

positive regulation of cell-substrate adhesion (ISO)

positive regulation of focal adhesion assembly (ISO)

positive regulation of gene expression (ISO)

positive regulation of GTPase activity (ISO)

positive regulation of integrin-mediated signaling pathway (IBA,IEA,ISO)

positive regulation of substrate adhesion-dependent cell spreading (IBA,ISO)

regulation of epithelial cell proliferation (ISO)

tumor necrosis factor-mediated signaling pathway (ISO)

Cellular Component

anchoring junction (IEA)

cell-cell junction (IBA,ISO)

cytoplasm (IBA)

focal adhesion (IBA,IEA,ISO)

membrane (IEA)

perinuclear region of cytoplasm (ISO)

plasma membrane (IEA)

protein-containing complex (IDA)

Molecular Function

actin binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

protein domain specific binding (IC)

protein kinase binding (ISO)

protein-containing complex binding (IDA,IPI)

zinc ion binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

integrin mediated signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	TGF-beta1 regulates the PINCH-1-integrin-linked kinase-alpha-parvin complex in glomerular cells.	Jung KY, etal., J Am Soc Nephrol. 2007 Jan;18(1):66-73. Epub 2006 Dec 13.
3.	TGF-beta1-induced PINCH-1-ILK-alpha-parvin complex formation regulates mesangial cell proliferation and hypertrophy.	Kim SM, etal., Exp Mol Med. 2007 Aug 31;39(4):514-23.
4.	ILK, PINCH and parvin: the tIPP of integrin signalling.	Legate KR, etal., Nat Rev Mol Cell Biol. 2006 Jan;7(1):20-31.
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12432066	PMID:12651156	PMID:15798193	PMID:15976450	PMID:19074270	PMID:19117955	PMID:19652092	PMID:20926685	PMID:21343177	PMID:21390327	PMID:21423176	PMID:24058607
PMID:24719101	PMID:25931508	PMID:27771700

Genomics

Comparative Map Data

Lims1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	26,851,364 - 26,961,607 (+)	NCBI		GRCr8
GRCr8 Ensembl	20	26,852,996 - 26,961,606 (+)	Ensembl		GRCr8 Ensembl
mRatBN7.2	20	26,309,833 - 26,418,511 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	26,309,895 - 26,418,500 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	27,370,767 - 27,418,134 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	26,757,119 - 26,804,483 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	27,505,048 - 27,552,462 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	27,895,981 - 28,004,767 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	27,954,433 - 28,002,082 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	29,715,580 - 29,824,252 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	37,349,188 - 37,397,427 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	27,819,971 - 27,867,155 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

LIMS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	108,533,671 - 108,687,246 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	108,533,671 - 108,687,246 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	109,150,127 - 109,303,702 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	108,571,199 - 108,667,321 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	108,663,284 - 108,759,405	NCBI
Celera	2	103,464,751 - 103,615,238 (+)	NCBI		Celera
Cytogenetic Map	2	q12.3	NCBI
HuRef	2	102,803,913 - 102,903,724 (+)	NCBI		HuRef
CHM1_1	2	109,154,977 - 109,307,968 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	108,994,291 - 109,147,842 (+)	NCBI		T2T-CHM13v2.0

Lims1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	58,159,164 - 58,260,513 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	58,159,288 - 58,260,513 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	58,323,342 - 58,424,691 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	58,323,466 - 58,424,691 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	57,786,295 - 57,887,437 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	57,718,904 - 57,820,046 (+)	NCBI		MGSCv36	mm8
Celera	10	59,061,688 - 59,162,733 (+)	NCBI		Celera
Cytogenetic Map	10	B4	NCBI
cM Map	10	29.31	NCBI

Lims1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955470	12,142,997 - 12,158,273 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIMS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	20,662,566 - 20,817,774 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	20,665,357 - 20,820,538 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	94,739,338 - 94,928,835 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	109,847,189 - 109,890,827 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

LIMS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	35,192,582 - 35,339,100 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	35,115,177 - 35,261,730 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	36,045,342 - 36,192,076 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	36,045,345 - 36,192,039 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	35,774,284 - 35,920,701 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	36,057,448 - 36,204,222 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	36,249,779 - 36,396,408 (-)	NCBI		UU_Cfam_GSD_1.0

Lims1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	92,157,129 - 92,210,709 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936829	187,234 - 240,213 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIMS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	47,606,230 - 47,672,884 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	47,607,737 - 47,704,921 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	49,748,396 - 49,812,059 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIMS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	12,059,347 - 12,210,779 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	12,059,411 - 12,213,064 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666080	7,500,757 - 7,651,520 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lims1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	11,720,492 - 11,846,571 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Lims1
823 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	696
Count of miRNA genes:	264
Interacting mature miRNAs:	344
Transcripts:	ENSRNOT00000064288
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat

Markers in Region

D20Rat34

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	20	26,924,916 - 26,925,056 (+)	Marker Load Pipeline
mRatBN7.2	20	26,381,814 - 26,381,954 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	27,968,077 - 27,968,216	NCBI	Rnor6.0
Rnor_5.0	20	29,787,562 - 29,787,701	UniSTS	Rnor5.0
RGSC_v3.4	20	37,383,774 - 37,383,914	RGD	RGSC3.4
RGSC_v3.4	20	37,383,775 - 37,383,914	UniSTS	RGSC3.4
Celera	20	27,833,251 - 27,833,386	UniSTS
RGSC_v3.1	20	37,397,574 - 37,397,714	RGD
SHRSP x BN Map	20	21.46	RGD
SHRSP x BN Map	20	21.46	UniSTS
FHH x ACI Map	20	12.4099	RGD
Cytogenetic Map	20	q11	UniSTS

D20Got123

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	26,410,405 - 26,410,555 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	27,996,665 - 27,996,814	NCBI	Rnor6.0
Rnor_5.0	20	29,816,150 - 29,816,299	UniSTS	Rnor5.0
RGSC_v3.4	20	37,355,177 - 37,355,326	UniSTS	RGSC3.4
Celera	20	27,861,848 - 27,861,979	UniSTS
Cytogenetic Map	20	q11	UniSTS

AW551584

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	26,417,921 - 26,418,028 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	28,004,178 - 28,004,284	NCBI	Rnor6.0
Rnor_5.0	20	29,823,663 - 29,823,769	UniSTS	Rnor5.0
RGSC_v3.4	20	37,346,894 - 37,347,000	UniSTS	RGSC3.4
Celera	20	27,869,343 - 27,869,449	UniSTS
Cytogenetic Map	20	q11	UniSTS

UniSTS:470540

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	45,840,751 - 45,841,239 (+)	Marker Load Pipeline
mRatBN7.2	1	43,435,439 - 43,435,926 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	43,726,851 - 43,727,337	NCBI	Rnor6.0
Rnor_5.0	1	45,056,048 - 45,056,534	UniSTS	Rnor5.0
RGSC_v3.4	1	37,801,439 - 37,801,925	UniSTS	RGSC3.4
Celera	1	39,078,959 - 39,079,445	UniSTS
Cytogenetic Map	1	p11	UniSTS
Cytogenetic Map	20	q11	UniSTS

Genetic Models

This gene Lims1 is modified in the following models/strains:

F344-Lims1^{Tn(sb-T2/Bart3)2.169Mcwi}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	11	49	113	91	90	59	25	59	6	218	97	11	93	45	60	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001145456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FJ640984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FJ640985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064288 ⟹ ENSRNOP00000062647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	26,885,208 - 26,958,951 (+)	Ensembl
mRatBN7.2 Ensembl	20	26,368,295 - 26,415,734 (+)	Ensembl
Rnor_6.0 Ensembl	20	27,954,433 - 28,002,082 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092075 ⟹ ENSRNOP00000073371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	26,389,287 - 26,415,734 (+)	Ensembl
Rnor_6.0 Ensembl	20	27,975,549 - 28,001,990 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094679 ⟹ ENSRNOP00000078972

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	26,852,996 - 26,961,606 (+)	Ensembl
mRatBN7.2 Ensembl	20	26,309,895 - 26,418,500 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098893 ⟹ ENSRNOP00000082999

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	26,911,390 - 26,961,600 (+)	Ensembl
mRatBN7.2 Ensembl	20	26,391,419 - 26,418,500 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101365 ⟹ ENSRNOP00000087973

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	26,932,406 - 26,961,600 (+)	Ensembl
mRatBN7.2 Ensembl	20	26,389,287 - 26,415,536 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105423 ⟹ ENSRNOP00000080693

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	26,936,564 - 26,958,724 (+)	Ensembl
mRatBN7.2 Ensembl	20	26,393,177 - 26,415,628 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112599 ⟹ ENSRNOP00000078506

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	26,911,321 - 26,961,604 (+)	Ensembl
mRatBN7.2 Ensembl	20	26,368,095 - 26,418,500 (+)	Ensembl

RefSeq Acc Id:

NM_001145456 ⟹ NP_001138928

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,911,404 - 26,958,830 (+)	NCBI
mRatBN7.2	20	26,368,295 - 26,415,734 (+)	NCBI
Rnor_6.0	20	27,954,567 - 28,001,990 (+)	NCBI
Rnor_5.0	20	29,715,580 - 29,824,252 (+)	NCBI
RGSC_v3.4	20	37,349,188 - 37,397,427 (-)	RGD
Celera	20	27,819,971 - 27,867,155 (+)	RGD

Sequence:

show sequence

TTCTGAGCTGGCAACACTCGCCTAGCACAAGTATCCTTAATTGCTGTGCAGAGAAAACTATGAC
CGCACTACAGCTTAAGGAGCTTTCACAGTCGGGCCTCTACCGGAGAAGGCGAGAGCGTCCTGAT
AGTCTGAGAGTCAATGGGCTCCCAGAGGAAGAGCTGAGCAACATGGCCAATGCTTTGGCCAGTG
CCACGTGTGAACGCTGCAAGGGGGGCTTTGACCCTGCTGAGAAGATCGTGAACAGTAATGGTGA
GCTGTACCATGAACAGTGTTTCGTGTGTGCTCAGTGCTTCCAGCAGTTCCCAGAAGGACTCTTT
TATGAGTTTGAAGGAAGAAAGTACTGTGAGCATGATTTCCAGATGCTCTTTGCTCCCTGCTGCC
ACCAGTGTGGTGAATTCATCATTGGCAGGGTTATCAAAGCCATGAACAACAGCTGGCATCCTGA
GTGCTTCAGATGTGACCTCTGCCAGGAAGTGCTGGCAGACATAGGGTTTGTCAAGAATGCTGGC
AGACACCTGTGTCGCCCATGTCATAATCGTGAAAAGGCCAGAGGCCTTGGAAAATACATCTGCC
AGAAATGCCATGCCATCATTGATGAACAGCCTTTGATTTTCAAGAACGACCCTTACCACCCAGA
CCACTTCAACTGTGCCAACTGCGGGAAGGAGCTAACTGCTGATGCTCGGGAGCTGAAAGGGGAG
CTATACTGTCTGCCATGTCATGATAAGATGGGGGTCCCTATCTGTGGCGCCTGCCGGAGGCCCA
TTGAAGGGCGAGTAGTGAATGCCATGGGCAAGCAATGGCATGTGGAGCATTTTGTTTGTGCCAA
ATGTGAAAAACCATTTCTTGGACATCGCCATTATGAGAGGAAGGGCTTGGCCTATTGTGAGACT
CACTATAATCAGCTATTTGGTGATGTTTGTTTCCATTGCAACCGTGTCATAGAAGGTGACGTGG
TCTCTGCCCTCAACAAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCCACTTGCAATACCAAACT
AACACTCAAGAATAAATTTGTGGAGTTTGACATGAAACCAGTCTGTAAGAAGTGCTACGAGAAA
TTTCCTTTGGAGCTGAAGAAAAGACTTAAGAAACTATCTGAGACCTTAGGAAGGAAATAACTTT
TGGTGTCTTTTTTCTCTTTCTTTTAACCAATATTACTTAACCTGATCCACCCTCATCTACTTTT
GCTTAAAACTGCTGTATCAAAGCATTAGAGAGAATGGTTCT

hide sequence

RefSeq Acc Id:

NM_001415155 ⟹ NP_001402084

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,853,010 - 26,961,599 (+)	NCBI
mRatBN7.2	20	26,309,896 - 26,418,503 (+)	NCBI

RefSeq Acc Id:

XM_006256385 ⟹ XP_006256447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,932,356 - 26,958,813 (+)	NCBI
mRatBN7.2	20	26,389,263 - 26,415,651 (+)	NCBI
Rnor_6.0	20	27,973,727 - 28,001,858 (+)	NCBI
Rnor_5.0	20	29,715,580 - 29,824,252 (+)	NCBI

Sequence:

show sequence

TCACTGATAAGTGGATAGTAGACAGAATCTTACTGTATAACTCAGGCTGGGCTTTATTGCTGTG
GAGCCCATGGTGGCTTTAAATTCTAAATCCGTCTACCTCAGCCTCTCAAGGGCTGGTATTACTG
GCATGCATCACCACTCCTAGCAGCTCTTTCAGAGTTAAAGTATGATTGGAATATAGCTCAGCAG
TTTCACTTTTCAGCATTTCTTAAGGAGAAGGATAAATCTACATTTACATAGAAGCCTCTACACA
ATTTTTATTTGTAATAGCCTAAAACTATGACCTATTTAAATCTTCAGTGAGTAAATGATTTGAC
CACATATACATTAATACTGCTGTATATTATACAGCAACACAAGATCAAACTGCATATATGTGTA
TAGCAACCTGGACAGATCTCAGTGGCATGATACTGACTTAAACAAAGCCAACCTTTGGCCACCA
TGTATGATAGGGTTCCACAAATGACACTTTCTACAGGTGAAAAACAGATTAGTTAGGAGTGCAG
TAAGATTTCTATGGGCAGAGATCATTGTCCTGCTTGATTGGTGGCCACAGTAGCCACACACTTG
ATGCCACTAGAATATATACCACTGTCAGGCTCCCAACTTTGCTACTCTAGTTCCCCTTCTTCAT
GGAGGAAACTGAAGGAGTGGCAAATGTTCCATCATCAAGAAATTGATCACCTGATTCTGTCTTT
CCTCTGTTTTACTTTGCCCTTAAGAAAAGAAACCAAAACCAAGAGCATATAGATAAATGCAAAG
GGTAACGTTTGCACAGGGAAGCTGACTTCTAGTGCTTTCCCTCTCCTATCCTCAGTTTGGAGTC
TCAGCAGGTGTAGGGCTGCAGTCTTGGAATTCCTCATCATTTTCATTGCTTTGGACTCAAAGTA
GGGAGATGCGATCTCATTTCCTGCATCTGATCCCATTTTGTACCTGCCACATACTGATTTTGAG
TTCCTGTTTTATTTCCCAGTGATTCTATTCAGCCATTTTCTCTCATAGAAGTTATAGCTTAGCC
CTGTCACTTATTATTCAGTCTCTTTGTGGCCTTGGTTTTCTCATTTGTGAGTAACACCTGTTTC
ATAGAGGATATGGTGATGAGATAGAAGACAAGTGCCAACTCTCCTATGTCCCCATTCACTGTTT
CTCAGGCTATATGGTGCTTGTCTTTCAAGGCCTCATGGCTCTCCTATTATCAGTATGGCCTGCA
GTGCCCCACACTATGCCTTGTGAGCACTATGCTCACAAGTAGTGCCTTGAGGTGCTTGTTCTGG
GTAGGATGGCTTACTGGACTAGAGAATGGAACAGCAGAACCCCAAACCCTTGTGTTGCCTCATG
CCACAGTGTTGCTATTATCATCATGATGAACAAAATTACAAAACAGTAGTTTGCCCTAAATATA
GCAGGAATGCCATGAAGAATTGGTGACTCTCCTGTTACAGGATTAGCAGGATTAAATCAAAGAG
TTACAATTAAACTCCAGTTCTTTCTGGTTCATTGAAGCTTTTACTGTTTCGTTTCTTGTATCAA
GAGCAAAGATAATAAAAGACTACATAGAGCTTCATTTCAGGGGCTCACAAGTCCTCATTGGAGC
TTGTCAAGCTTTTCAAATATTTCTGTGCACACCCAAATGGAGATTCACTCAGACACAAATTGTC
ACTGCCCTGTGAAATGACTTTGAAAGCTTCTAGAAGTCATAATCCGGACTGCTGTGCCGCCGAG
CTCTTAACATGAAAAGTCAGGAGTGACCCTGGCAGCTGGGTGACGCATGCGGGAACAGTGGGAG
TGACCCTGGCTGGGAAACAGGAGGCCTGGATATTGTTTCTCTTCTCTGTATCCTGCTGGGCATC
GCAGGGCTCTGAACTCTGGAGCTTGTACAATGGCCTTCCCAGGACGGGCACGCCCGAGCACTAT
CCCAGAGAATGAAGAAATCCCCCAGACAGCCCTTAACAGTGTCCTCGAAGCTAATGGGAATGAA
GACGAGAGGGCTGTGTCGAACCTGCAGCGCAGGCACAGTGATATAAAAGTCTACAAGGAATTCT
GTGATTTCTATGCGAAATTCAACATGGCCAATGCTTTGGCCAGTGCCACGTGTGAACGCTGCAA
GGGGGGCTTTGACCCTGCTGAGAAGATCGTGAACAGTAATGGTGAGCTGTACCATGAACAGTGT
TTCGTGTGTGCTCAGTGCTTCCAGCAGTTCCCAGAAGGACTCTTTTATGAGTTTGAAGGAAGAA
AGTACTGTGAGCATGATTTCCAGATGCTCTTTGCTCCCTGCTGCCACCAGTGTGGTGAATTCAT
CATTGGCAGGGTTATCAAAGCCATGAACAACAGCTGGCATCCTGAGTGCTTCAGATGTGACCTC
TGCCAGGAAGTGCTGGCAGACATAGGGTTTGTCAAGAATGCTGGCAGACACCTGTGTCGCCCAT
GTCATAATCGTGAAAAGGCCAGAGGCCTTGGAAAATACATCTGCCAGAAATGCCATGCCATCAT
TGATGAACAGCCTTTGATTTTCAAGAACGACCCTTACCACCCAGACCACTTCAACTGTGCCAAC
TGCGGGAAGGAGCTAACTGCTGATGCTCGGGAGCTGAAAGGGGAGCTATACTGTCTGCCATGTC
ATGATAAGATGGGGGTCCCTATCTGTGGCGCCTGCCGGAGGCCCATTGAAGGGCGAGTAGTGAA
TGCCATGGGCAAGCAATGGCATGTGGAGCATTTTGTTTGTGCCAAATGTGAAAAACCATTTCTT
GGACATCGCCATTATGAGAGGAAGGGCTTGGCCTATTGTGAGACTCACTATAATCAGCTATTTG
GTGATGTTTGTTTCCATTGCAACCGTGTCATAGAAGGTGACGTGGTCTCTGCCCTCAACAAGGC
CTGGTGTGTGAGCTGCTTTGCCTGTTCCACTTGCAATACCAAACTAACACTCAAGGATAAGTTT
GTTGCAATTGATCTAAAGCCAGTCTGCAAATACTGTTATGAGAAAATGCCAGAAGAGCTTAAGA
GGCGACTTGCCAGACGGGAGAGAGAAGCAAGGGATAAAGAGAAGCAGAGAAAGAGAAAGCCAGT
GTGTCTGTAACCGTTCTATCCCTTCCACACCATTCTCACTGCTTCTCTGTGGAATAAATTTGTG
GAGTTTGACATGAAACCAGTCTGTAAGAAGTGCTACGAGAAATTTCCTTTGGAGCTGAAGAAAA
GACTTAAGAAAC

hide sequence

RefSeq Acc Id:

XM_006256387 ⟹ XP_006256449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,932,334 - 26,961,607 (+)	NCBI
mRatBN7.2	20	26,389,277 - 26,418,511 (+)	NCBI
Rnor_6.0	20	27,973,730 - 28,004,767 (+)	NCBI
Rnor_5.0	20	29,715,580 - 29,824,252 (+)	NCBI

Sequence:

show sequence

CTGATAAGTGGATAGTAGACAGAATCTTACTGTATAACTCAGGCTGGGCTTTATTGCTGTGGAG
CCCATGGTGGCTTTAAATTCTAAATCCGTCTACCTCAGCCTCTCAAGGGCTGGTATTACTGGCA
TGCATCACCACTCCTAGCAGCTCTTTCAGAGTTAAAGTATGATTGGAATATAGCTCAGCAGTTT
CACTTTTCAGCATTTCTTAAGGAGAAGGATAAATCTACATTTACATAGAAGCCTCTACACAATT
TTTATTTGTAATAGCCTAAAACTATGACCTATTTAAATCTTCAGTGAGTAAATGATTTGACCAC
ATATACATTAATACTGCTGTATATTATACAGCAACACAAGATCAAACTGCATATATGTGTATAG
CAACCTGGACAGATCTCAGTGGCATGATACTGACTTAAACAAAGCCAACCTTTGGCCACCATGT
ATGATAGGGTTCCACAAATGACACTTTCTACAGGTGAAAAACAGATTAGTTAGGAGTGCAGTAA
GATTTCTATGGGCAGAGATCATTGTCCTGCTTGATTGGTGGCCACAGTAGCCACACACTTGATG
CCACTAGAATATATACCACTGTCAGGCTCCCAACTTTGCTACTCTAGTTCCCCTTCTTCATGGA
GGAAACTGAAGGAGTGGCAAATGTTCCATCATCAAGAAATTGATCACCTGATTCTGTCTTTCCT
CTGTTTTACTTTGCCCTTAAGAAAAGAAACCAAAACCAAGAGCATATAGATAAATGCAAAGGGT
AACGTTTGCACAGGGAAGCTGACTTCTAGTGCTTTCCCTCTCCTATCCTCAGTTTGGAGTCTCA
GCAGGTGTAGGGCTGCAGTCTTGGAATTCCTCATCATTTTCATTGCTTTGGACTCAAAGTAGGG
AGATGCGATCTCATTTCCTGCATCTGATCCCATTTTGTACCTGCCACATACTGATTTTGAGTTC
CTGTTTTATTTCCCAGTGATTCTATTCAGCCATTTTCTCTCATAGAAGTTATAGCTTAGCCCTG
TCACTTATTATTCAGTCTCTTTGTGGCCTTGGTTTTCTCATTTGTGAGTAACACCTGTTTCATA
GAGGATATGGTGATGAGATAGAAGACAAGTGCCAACTCTCCTATGTCCCCATTCACTGTTTCTC
AGGCTATATGGTGCTTGTCTTTCAAGGCCTCATGGCTCTCCTATTATCAGTATGGCCTGCAGTG
CCCCACACTATGCCTTGTGAGCACTATGCTCACAAGTAGTGCCTTGAGGTGCTTGTTCTGGGTA
GGATGGCTTACTGGACTAGAGAATGGAACAGCAGAACCCCAAACCCTTGTGTTGCCTCATGCCA
CAGTGTTGCTATTATCATCATGATGAACAAAATTACAAAACAGTAGTTTGCCCTAAATATAGCA
GGAATGCCATGAAGAATTGGTGACTCTCCTGTTACAGGATTAGCAGGATTAAATCAAAGAGTTA
CAATTAAACTCCAGTTCTTTCTGGTTCATTGAAGCTTTTACTGTTTCGTTTCTTGTATCAAGAG
CAAAGATAATAAAAGACTACATAGAGCTTCATTTCAGGGGCTCACAAGTCCTCATTGGAGCTTG
TCAAGCTTTTCAAATATTTCTGTGCACACCCAAATGGAGATTCACTCAGACACAAATTGTCACT
GCCCTGTGAAATGACTTTGAAAGCTTCTAGAAGTCATAATCCGGACTGCTGTGCCGCCGAGCTC
TTAACATGAAAAGTCAGGAGTGACCCTGGCAGCTGGGTGACGCATGCGGGAACAGTGGGAGTGA
CCCTGGCTGGGAAACAGGAGGCCTGGATATTGTTTCTCTTCTCTGTATCCTGCTGGGCATCGCA
GGGCTCTGAACTCTGGAGCTTGTACAATGGCCTTCCCAGGACGGGCACGCCCGAGCACTATCCC
AGAGAATGAAGAAATCCCCCAGACAGCCCTTAACAGTGTCCTCGAAGCTAATGGGAATGAAGAC
GAGAGGGCTGTGTCGAACCTGCAGCGCAGGCACAGTGATATAAAAGTCTACAAGGAATTCTGTG
ATTTCTATGCGAAATTCAACATGGCCAATGCTTTGGCCAGTGCCACGTGTGAACGCTGCAAGGG
GGGCTTTGACCCTGCTGAGAAGATCGTGAACAGTAATGGTGAGCTGTACCATGAACAGTGTTTC
GTGTGTGCTCAGTGCTTCCAGCAGTTCCCAGAAGGACTCTTTTATGAGTTTGAAGGAAGAAAGT
ACTGTGAGCATGATTTCCAGATGCTCTTTGCTCCCTGCTGCCACCAGTGTGGTGAATTCATCAT
TGGCAGGGTTATCAAAGCCATGAACAACAGCTGGCATCCTGAGTGCTTCAGATGTGACCTCTGC
CAGGAAGTGCTGGCAGACATAGGGTTTGTCAAGAATGCTGGCAGACACCTGTGTCGCCCATGTC
ATAATCGTGAAAAGGCCAGAGGCCTTGGAAAATACATCTGCCAGAAATGCCATGCCATCATTGA
TGAACAGCCTTTGATTTTCAAGAACGACCCTTACCACCCAGACCACTTCAACTGTGCCAACTGC
GGGAAGGAGCTAACTGCTGATGCTCGGGAGCTGAAAGGGGAGCTATACTGTCTGCCATGTCATG
ATAAGATGGGGGTCCCTATCTGTGGCGCCTGCCGGAGGCCCATTGAAGGGCGAGTAGTGAATGC
CATGGGCAAGCAATGGCATGTGGAGCATTTTGTTTGTGCCAAATGTGAAAAACCATTTCTTGGA
CATCGCCATTATGAGAGGAAGGGCTTGGCCTATTGTGAGACTCACTATAATCAGCTATTTGGTG
ATGTTTGTTTCCATTGCAACCGTGTCATAGAAGGTGACGTGGTCTCTGCCCTCAACAAGGCCTG
GTGTGTGAGCTGCTTTGCCTGTTCCACTTGCAATACCAAACTAACACTCAAGAATAAATTTGTG
GAGTTTGACATGAAACCAGTCTGTAAGAAGTGCTACGAGAAATTTCCTTTGGAGCTGAAGAAAA
GACTTAAGAAACTATCTGAGACCTTAGGAAGGAAATAACTTTTGGTGTCTTTTTTCTCTTTCTT
TTAACCAATATTACTTAACCTGATCCACCCTCATCTACTTTTGCTTAAAACTGTATCAAAGCAT
TAGAGAGAATGGTTCTCTTCATTTCTCTTTTCTCATTTAAAATGAAAGAACATGTTTATTTCCA
TGTAAAACACAGATGAAATCAGGACTTTCATTTCTTTAGCCATATTAGTAGTAGGCATTAATAG
TATATAGCCAAAAAGCAAAACAAACAAAAAAAGTTGAAGGGTAGTTTTAATTAAGCCCTCCAAA
ATATAAATTTAACTCTTCAGAATTAAACACCCTGCTCTATGGACCAACAGAAGCACTTGCTGCC
AAACCTAGTGGACTCCTTGAGAAAGTATCTGTGGCCATGTCCATGTGGGTCATGTGGAGCGAGA
ACTCACTCCCACAGTTGTCCTCTAAGCTCCACAGACGGCCGTGGTGCATTGCGCTGACACACAT
AATTCATAAACGTAATAAACAACCACTGTTCTAAAGAGTCAGCTCTTACATGACTCCCATTTTA
AAGGACTCTAAGCTTTGCTTTCCTTTATAGCATAAGAAAATAATTTCCTATTCATATGCTGGGA
GAGGAGATAAGTAAACTACCAAAATAGCTCCTATGTATAATCATGTGTTTATCCAGTTAGCACT
GTAAAAGGAACATACATATTACTAAGAAGCAAAAAATTTTCAGAGTATTTTGATTTTTTTAATT
AAATCACTATGCTTAATCTTCTATTTTGTTCTCCTTATAAATTTTTCCTTCATAAATTACTTAA
CATACTTATAGCTACTAATGAGTCTTTTACATTTTTTGAGCAAAACAAAACAAATTGTCAGGAA
AATATTGCATACATTGTGATACTGATGAAATGAAGCATTTTAAAAATATATTACACAATTGTGC
TTCTAAACTTAATGTAAAATGCATAGTATTCAAGTGGGACATGAAATGCACTATTATGCAGCTT
GAAATGTATCGATTTCCAAAGTGAGTGTGAGCCGGGTGCAGCGGCACTAGGCGTCGATCCCGGC
ACTCTGGAGGCAGAGGCAGGCAGATCTCTGAGTCCTAGGCCAGCCAGGGTTGCGGATTAAAACC
TTGACCGTATCTCATATTACCTTTGTGCTAATATCTACATAATCTAACTTGCCTTAGAAAACTG
CATCTTCTAATCAGGAATTCTAGATATTCCTATAATACCAAATTAAGTATTTTGACTGAGATTC
ATAAATTTAGAATCATTTGCCACTGATTAAAACTTTAAAAATTCTTTTCTCAGGAAGCCAATGA
AAGTTAACTTCTATCCTATTATTAGAACTATGCAGATATATTAAAACATTTTAATGAAGGCTTT
TTCATTTCAAATGTATAACTGGGTTTTATTTACTATAAAGTAATAAAACTATATAAATGATACT
TTTAGATTGAAAGAGGGTAGTAAGAGTAGCAAATCCTAAGTTACAGTGTGAGATGCTATCTCCC
AAAACATCCTCACAAACAAAAACACTAGTGTATCATTTCACCATAAAGAATACCTCAGGAGCCT
AGGACAAAACTCAGTAATGGAGTCACACCAGCCTTAGGACCTGAGTTTGAACTTGGAGACAAGT
TGTTCTCTGGATTTACAAGGTAGCCAACTCAGCCTAACTAGCGAGCCCCAGATCCAAGGGCTCA
ATCCTGTATCAAAAAAAGCAAGGTGGATGGCTCCTGAGGAATGACAGCCAAGACTGACATCTGG
CTTCCACATCCACACACACATATGCACACATTCAGAAATATAGATGTATACACAAAAAAGATAT
CTCAGGATGCTGTTACTCTGCCATTAAAAGTTTGCAATCGTGAATTTTTAAAATACTTGGTTAT
GCACATTGTAGAATACATTTCTGTTCATATAACTAACTTGTAACCAATCTTAATAGTCTTTCTT
AATAGTCTTTGGGAATTAAGAGAGTCATAGGTGATTAAAATGTATATGCTTTGTATTTGTGTTT
AGCATTTTAAATCTGTCTTTACTTCTGATAATAAGAACCCACATTTCTTCGGTGTGCCTTTGTC
AGCTAAGAATGTCAAGCAGTGATTACCTTAAAAGTATTTATGAACTATTGTACGTGCATTTAGG
CAAATAGAGTTTGTAGCCCAGGGTCCTGGTGCTAAATTCTTACATGCCTCACTAGAAGTATGGA
GCAGAAAAGCAGGCGTTCCTGTGCTTTCCCCATCTCTTTAGATGTGCGTGGCCTTGCCTGACTG
CCTTTGCTTGTGTGACATCACTTAGCCAGAGTCCCCACTGCTGGCTTTGCTCACTTCTCTTTAG
ACAATATTCCAGTAAGCTTGATCTCATAATTATGTAGTAATTCATCTAGAGATGGTGCCTTTCA
CTGTGGGGTATAACATTAGAGCCCTTAGTAAGGAAGGAGATGGAGGTCTAAATGGGGCCAAGAC
AAAGACTTTATCTAGTTCCTATTAATTGTAGGCTTTCACTGGCTGCTGGCATTTGTCATTGAAC
ATCTCTGAGTTTCTGAGAACAATCTGAAGTAATTCATTGTGCTTATGAAATTTCTAAGTGCCCT
TTTTGTCCTTAGTTACCATAATGTAACATGGAAAATGGATACACAAAAAATATTTTGTGTGTCA
TATTCAAAGCCTTATTAATACTTTGCCTGAAATAGGACATTTTGCCTCATTCATTTGCCAAAGT
AGCCAATTCCAAAATAAGGAAACTTTGATGTGGGCTGACAATATTCTTGTGTTTTATTTTAGAT
TGTAAACTTGATGGTAAGAAATTATATCAATAATTGTGCTTTTTATGTACCAACCATTGCTGTG
TACTTTTGGTGCTTAATAAATATTCATAATTATTATAGTGA

hide sequence

RefSeq Acc Id:

XM_006256388 ⟹ XP_006256450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,909,001 - 26,958,813 (+)	NCBI
mRatBN7.2	20	26,366,498 - 26,415,651 (+)	NCBI
Rnor_6.0	20	27,952,802 - 28,001,858 (+)	NCBI
Rnor_5.0	20	29,715,580 - 29,824,252 (+)	NCBI

Sequence:

show sequence

AATTAAAAAAGAAGAAAAGATCTTCTGTGTTCTACTGTATTATACACTCTGCTGTGCACTGGGG
CTGGGGCTGTATTTCCTCCTGGTAGTGCTGTAGGCCAGCTTGGAGGCTGAATGCTAGTCAATAG
TGTATTTTCCAGCAGTTTGTGAAATTTTCTTTCAAAGTTGTGGAATGCCTGTTGGTGCCTGTGT
GTTCTTACCTAGCTCCCTTTACAGTGTGCAGCAGTATGCATCTGCACAGGTCGAGGAGAAAAGT
AAAGTACCCCCACCTCCTCTCCCTCTCTTCCTCCCTCTGTCCATCTGTCTTCATGAAGACAATG
GTTTAAAGAGCCTTCAGCAAAGGCTCAGAATTTAATTTTATTCTTTGTAGCAGTTTCATTGTAG
CATACACGTTGACTTACTGAAATTCCTACTTGTCAGCCCAGCCATTTGAAAAGTCAGAGGGTAA
CAGTTGTCATAGCTTGTTTGTTACGAGCTTGGAACTGGTCTTTTTGTTACTGTTGGAGCTTAGA
ACTGGTCTTTTTGTTACTGTCTTCACATCCTTCTAACCACAGACTCTACATACAAGATTCATCC
CACACAGTTGTGTTTCCTGTGTCGGTAGCTTTCACCAAGCTGTTTCCTTGTTGGCAGTGTTACA
TCAATTTAAAACAGAGCCAAACAGCCACCTCTTTAAAAGTAACGCTACTGGTTTCTTTATGCTA
TGCAAACACATCTTGTCTCTTTTTGAGTAGTGCTTGGTAGTGAACCGAGTCTTGTACATGCTAA
CCATGTACTCTTCAGTTCCTTTTCTGTATTCCTGTTGAGAGCAGTCTAAAACGAGAAGAATGGT
ACAGACTGTTCAAAGAGAAATTTACTAGAACCATGAATCAAGCTTTTGGCTGAGAACTAGCCAG
CAGCCCTGTATTTGTGCTGTGGTGTAATGTCCTGAGAGGGACTTAATTGGCCTGGTGGGTGGCA
CCCTGCCCGTACTGTTCACATATTGCAGCGTGTGACACAGCATTTCCCATGTCCTCTGTGATCG
GCAGCCCCTTCACCTTGCTTTCCAAGATCAAATACACAGATAAATATTAGCATTTATAGACTGA
CAACCTGAGATAAATGTTACCGAGCAGAGGTGACTGTGTAAGTTACGCTTATTCAGAAAGAGTA
GGCATAGTATCAGAAAATCATTTAACAGAATTTAGCAGGAGAAACACTCTTTCTCCCACTCACG
AATTTTTTAATAATTTTTACTGGGGAGGGGGTGGCCTAGACACCATCTTCTCTTCTCAGGAGGA
TTTAGAATGCTGAGAGAGGAAGGAATTGGACTGTTTCCTTTGGAATTCTGCCTCACCACCACCA
CCACCCCCCCAGGGAAAATGTCCCAAAAAGCTCCTGATGACCAGGCACTTCTTTATACTGACAG
CTGTCTGTGAAATGTTAATGGATTTCCTGGCAAATAAAGCAGGGCAGGACCCTCCTTTAAGCAT
TACTTTGCTAAAGCTTTCCCCAACTTCAATTCAGAAGACTCTTGGAGAAATTTTATAAAGGAAT
TGTTCATAAGAAATTTGCTTACTGGTGACCACGTGGGCCATGTGGGTCACTGACTCCCCCTCCC
CTAGGTACAGGGCCCAGAGATAAGGCAAGTCATGTCTTGCTGGGGAGGGTGTGTACCAACAAGA
AACAGGAAGCTGTGTTTCAACCGACTGGCCTGGCTGCTTTGCCTGGAGCTTTCTAACCCAGAGT
CAGGTGTGCTGAGGTCCTTCCGCAGAGGACACTGCCTTTCTGAGCTGGCAACACTCGCCTAGCA
CAAGTATCCTTAATTGCTGTGCAGAGAAAACTATGACCGCACTACAGCTTAAGGAGCTTTCACA
GTCGGGCCTCTACCGGAGAAGGCGAGAGCGTCCTGATAGTCTGAGAGTCAATGGGCTCCCAGAG
GAAGAGCTGAGCAACATGGCCAATGCTTTGGCCAGTGCCACGTGTGAACGCTGCAAGGGGGGCT
TTGACCCTGCTGAGAAGATCGTGAACAGTAATGGTGAGCTGTACCATGAACAGTGTTTCGTGTG
TGCTCAGTGCTTCCAGCAGTTCCCAGAAGGACTCTTTTATGAGTTTGAAGGAAGAAAGTACTGT
GAGCATGATTTCCAGATGCTCTTTGCTCCCTGCTGCCACCAGTGTGGTGAATTCATCATTGGCA
GGGTTATCAAAGCCATGAACAACAGCTGGCATCCTGAGTGCTTCAGATGTGACCTCTGCCAGGA
AGTGCTGGCAGACATAGGGTTTGTCAAGAATGCTGGCAGACACCTGTGTCGCCCATGTCATAAT
CGTGAAAAGGCCAGAGGCCTTGGAAAATACATCTGCCAGAAATGCCATGCCATCATTGATGAAC
AGCCTTTGATTTTCAAGAACGACCCTTACCACCCAGACCACTTCAACTGTGCCAACTGCGGGAA
GGAGCTAACTGCTGATGCTCGGGAGCTGAAAGGGGAGCTATACTGTCTGCCATGTCATGATAAG
ATGGGGGTCCCTATCTGTGGCGCCTGCCGGAGGCCCATTGAAGGGCGAGTAGTGAATGCCATGG
GCAAGCAATGGCATGTGGAGCATTTTGTTTGTGCCAAATGTGAAAAACCATTTCTTGGACATCG
CCATTATGAGAGGAAGGGCTTGGCCTATTGTGAGACTCACTATAATCAGCTATTTGGTGATGTT
TGTTTCCATTGCAACCGTGTCATAGAAGGTGACGTGGTCTCTGCCCTCAACAAGGCCTGGTGTG
TGAGCTGCTTTGCCTGTTCCACTTGCAATACCAAACTAACACTCAAGGATAAGTTTGTTGCAAT
TGATCTAAAGCCAGTCTGCAAATACTGTTATGAGAAAATGCCAGAAGAGCTTAAGAGGCGACTT
GCCAGACGGGAGAGAGAAGCAAGGGATAAAGAGAAGCAGAGAAAGAGAAAGCCAGTGTGTCTGT
AACCGTTCTATCCCTTCCACACCATTCTCACTGCTTCTCTGTGGAATAAATTTGTGGAGTTTGA
CATGAAACCAGTCTGTAAGAAGTGCTACGAGAAATTTCCTTTGGAGCTGAAGAAAAGACTTAAG
AAAC

hide sequence

RefSeq Acc Id:

XM_006256389 ⟹ XP_006256451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,851,364 - 26,958,813 (+)	NCBI
mRatBN7.2	20	26,309,833 - 26,415,651 (+)	NCBI
Rnor_6.0	20	27,895,981 - 28,001,858 (+)	NCBI
Rnor_5.0	20	29,715,580 - 29,824,252 (+)	NCBI

Sequence:

show sequence

GCCTCGTCCCGCCCCCTTCCTGCCTAGGACCGGCCCTCAAATCTGCCGCTCGCCGCCGCAGCGA
GGGAAGAGGGTGCGGCCACCGCGGCGGGCACTGAGGCACAGACTGACCCGGCGTGGACCGCGGA
GATGCTGGGCGTGGCGGCCGGAATGACCAACAGCAACATGGCCAATGCTTTGGCCAGTGCCACG
TGTGAACGCTGCAAGGGGGGCTTTGACCCTGCTGAGAAGATCGTGAACAGTAATGGTGAGCTGT
ACCATGAACAGTGTTTCGTGTGTGCTCAGTGCTTCCAGCAGTTCCCAGAAGGACTCTTTTATGA
GTTTGAAGGAAGAAAGTACTGTGAGCATGATTTCCAGATGCTCTTTGCTCCCTGCTGCCACCAG
TGTGGTGAATTCATCATTGGCAGGGTTATCAAAGCCATGAACAACAGCTGGCATCCTGAGTGCT
TCAGATGTGACCTCTGCCAGGAAGTGCTGGCAGACATAGGGTTTGTCAAGAATGCTGGCAGACA
CCTGTGTCGCCCATGTCATAATCGTGAAAAGGCCAGAGGCCTTGGAAAATACATCTGCCAGAAA
TGCCATGCCATCATTGATGAACAGCCTTTGATTTTCAAGAACGACCCTTACCACCCAGACCACT
TCAACTGTGCCAACTGCGGGAAGGAGCTAACTGCTGATGCTCGGGAGCTGAAAGGGGAGCTATA
CTGTCTGCCATGTCATGATAAGATGGGGGTCCCTATCTGTGGCGCCTGCCGGAGGCCCATTGAA
GGGCGAGTAGTGAATGCCATGGGCAAGCAATGGCATGTGGAGCATTTTGTTTGTGCCAAATGTG
AAAAACCATTTCTTGGACATCGCCATTATGAGAGGAAGGGCTTGGCCTATTGTGAGACTCACTA
TAATCAGCTATTTGGTGATGTTTGTTTCCATTGCAACCGTGTCATAGAAGGTGACGTGGTCTCT
GCCCTCAACAAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCCACTTGCAATACCAAACTAACAC
TCAAGGATAAGTTTGTTGCAATTGATCTAAAGCCAGTCTGCAAATACTGTTATGAGAAAATGCC
AGAAGAGCTTAAGAGGCGACTTGCCAGACGGGAGAGAGAAGCAAGGGATAAAGAGAAGCAGAGA
AAGAGAAAGCCAGTGTGTCTGTAACCGTTCTATCCCTTCCACACCATTCTCACTGCTTCTCTGT
GGAATAAATTTGTGGAGTTTGACATGAAACCAGTCTGTAAGAAGTGCTACGAGAAATTTCCTTT
GGAGCTGAAGAAAAGACTTAAGAAAC

hide sequence

RefSeq Acc Id:

XM_006256390 ⟹ XP_006256452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,857,400 - 26,958,813 (+)	NCBI
mRatBN7.2	20	26,341,925 - 26,415,651 (+)	NCBI
Rnor_6.0	20	27,926,881 - 28,001,858 (+)	NCBI
Rnor_5.0	20	29,715,580 - 29,824,252 (+)	NCBI

Sequence:

show sequence

AGAGAGAGAGAGAGAGAGAGAGAGACACCAAATAAGAAGTTGACATCATGAAAAACATTACACT
GACAATGAGAAGACCCTTGAGAATGGTGAAGTGGTTCAGATTGGGATATGTACTTCGCTTCCAG
ATGAAGACTGACAGGACCTGCTCAAAAGCAGAGATGAAAACAATGCCAGTCTTTTCAGCGTGCG
TATGTTGTGGAGCACAGCACAGCTGTAGGAATCAGCTGCTTAGAAGTAGACTCCAGCCTAAATG
ATGAGCAGAATGGGAAGGAGGCCTGAAGGAAGTAAGGGCTTCTCACTGTAAGAGCCAGTAGTAG
AAATAAGACAAGAAAGGGCAGAAACTTTACAGCTGGGTTGCTGGTTGATAGGAAGCTCTCTATC
AACTGGGTGTTCAACCTCCAAGGATTATAATGAGGAAGGAGAAGCTAATGACACCTGTGATTAC
ATATGTAGAGGCCAAGGAGTTCTCTTCATGGCACACAACTGTCTCTGATGGAAACTAGGGTGAT
GGTTGCAGCAGCAGGGTATGGGGTGGGTGGGGTGAGAGTGGGGAAGCTGTGCTTTTTACTTCTC
ACTTCTGCCTTCTGTAGTCTGCTGTTATAATTGGGTTTTACACCATGAAAATGAAACCTGTTCA
TGTGTCTCCTCAAGAATACTGACAGAGCCCAGAGTTCTGTAACTTACTCTGCCTAAGCTTGTGT
GACATGAGTTCTATCTTTCTGAGCACTGAGCCCTTCCCTGTAAGAGGGACTGCCCATGACATAT
CTTTCAGTTCTGCTCTTTTGCTTCCTACCAGCTCTAACGACTGCCAGCTCCCAGTGTCTGTTGA
GGAAAAAAAAGCAATGAATTGCTTTCCTCTTTTGCGATTAACCCCAGGCCTTAGAACTTAGAAG
CACCATCCTAAAAACAACTTCTTTATAATAAAGGCCAAAAAATTCCTTGTTGTATTCCCAGTAT
GTCAAGATATTAATGCAAGAGGAAGGCAGGCTACATTTCTCCTGTTTTTCCTCAGCCTCAACAA
AAGATCCCCTATTCTTCAGTGGAAACTTAGCATCAAGACGTCTCGGGAGGTGACTCAGCCAGGC
TTGTGAGTCCCGAGCACTGTAGCCTGCTCCTCTTCTGTGCTGTTTGTCTAGGATATCTGCAGTA
GAAAAAACAGTCTCTATTGTTGAGCTAGCTTGTGCCCAGCACCTCAGTCTCTAAGCTGCAGGTG
GAGCTCATAGAGTCGTCATGAACATCCAACTCCTTCTGTGCTGACTAAAATACTTGCCTTCATA
TTACAAGTGGGTAAACGTTAACTTCTTAAGAATATAAGATAGCTCAGCAGGATATGAGTTATGA
CATTTAGGGTGTTGTCTTATTGCTTCAGAACTGTGGAGTTTTTGAGTAATAGGCCATGTTACAT
GGTTTGACTGAGAAAAAAAAAAAGCCTCAACTTGGTTTCATTGGCTTAAATATAGTTCAAAGCC
GTAGACACCGAGGTCAGACGAGGAAGTGCTGTACAAGCAAGGAAGTAAGAGCCTTTAAAGATAA
TCTGCTTTCTTGGACATGAGTGTCCAAGTTCTGATAACTAACTTGAAATAGGAATAGAAGTACT
GGAGTAGGGATCCTTCATTCTAAATTGGGAGAGAGGAGTTTGGAGACGCTGACGTTGTAGAGGT
GGGCCGATATGGGGAAAGTGACTAGGATGGAGGAGCAGAAAAGGACCTGACACCACGAGCTAGC
ACCGCACGGGCAACATGGCCAATGCTTTGGCCAGTGCCACGTGTGAACGCTGCAAGGGGGGCTT
TGACCCTGCTGAGAAGATCGTGAACAGTAATGGTGAGCTGTACCATGAACAGTGTTTCGTGTGT
GCTCAGTGCTTCCAGCAGTTCCCAGAAGGACTCTTTTATGAGTTTGAAGGAAGAAAGTACTGTG
AGCATGATTTCCAGATGCTCTTTGCTCCCTGCTGCCACCAGTGTGGTGAATTCATCATTGGCAG
GGTTATCAAAGCCATGAACAACAGCTGGCATCCTGAGTGCTTCAGATGTGACCTCTGCCAGGAA
GTGCTGGCAGACATAGGGTTTGTCAAGAATGCTGGCAGACACCTGTGTCGCCCATGTCATAATC
GTGAAAAGGCCAGAGGCCTTGGAAAATACATCTGCCAGAAATGCCATGCCATCATTGATGAACA
GCCTTTGATTTTCAAGAACGACCCTTACCACCCAGACCACTTCAACTGTGCCAACTGCGGGAAG
GAGCTAACTGCTGATGCTCGGGAGCTGAAAGGGGAGCTATACTGTCTGCCATGTCATGATAAGA
TGGGGGTCCCTATCTGTGGCGCCTGCCGGAGGCCCATTGAAGGGCGAGTAGTGAATGCCATGGG
CAAGCAATGGCATGTGGAGCATTTTGTTTGTGCCAAATGTGAAAAACCATTTCTTGGACATCGC
CATTATGAGAGGAAGGGCTTGGCCTATTGTGAGACTCACTATAATCAGCTATTTGGTGATGTTT
GTTTCCATTGCAACCGTGTCATAGAAGGTGACGTGGTCTCTGCCCTCAACAAGGCCTGGTGTGT
GAGCTGCTTTGCCTGTTCCACTTGCAATACCAAACTAACACTCAAGGATAAGTTTGTTGCAATT
GATCTAAAGCCAGTCTGCAAATACTGTTATGAGAAAATGCCAGAAGAGCTTAAGAGGCGACTTG
CCAGACGGGAGAGAGAAGCAAGGGATAAAGAGAAGCAGAGAAAGAGAAAGCCAGTGTGTCTGTA
ACCGTTCTATCCCTTCCACACCATTCTCACTGCTTCTCTGTGGAATAAATTTGTGGAGTTTGAC
ATGAAACCAGTCTGTAAGAAGTGCTACGAGAAATTTCCTTTGGAGCTGAAGAAAAGACTTAAGA
AAC

hide sequence

RefSeq Acc Id:

XM_017601761 ⟹ XP_017457250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,908,995 - 26,958,813 (+)	NCBI
mRatBN7.2	20	26,366,489 - 26,415,651 (+)	NCBI
Rnor_6.0	20	27,952,800 - 28,001,858 (+)	NCBI

Sequence:

show sequence

ACAATTAAAAAAGAAGAAAAGATCTTCTGTGTTCTACTGTATTATACACTCTGCTGTGCACTGG
GGCTGGGGCTGTATTTCCTCCTGGTAGTGCTGTAGGCCAGCTTGGAGGCTGAATGCTAGTCAAT
AGTGTATTTTCCAGCAGTTTGTGAAATTTTCTTTCAAAGTTGTGGAATGCCTGTTGGTGCCTGT
GTGTTCTTACCTAGCTCCCTTTACAGTGTGCAGCAGTATGCATCTGCACAGGTCGAGGAGAAAA
GTAAAGTACCCCCACCTCCTCTCCCTCTCTTCCTCCCTCTGTCCATCTGTCTTCATGAAGACAA
TGGTTTAAAGAGCCTTCAGCAAAGGCTCAGAATTTAATTTTATTCTTTGTAGCAGTTTCATTGT
AGCATACACGTTGACTTACTGAAATTCCTACTTGTCAGCCCAGCCATTTGAAAAGTCAGAGGGT
AACAGTTGTCATAGCTTGTTTGTTACGAGCTTGGAACTGGTCTTTTTGTTACTGTTGGAGCTTA
GAACTGGTCTTTTTGTTACTGTCTTCACATCCTTCTAACCACAGACTCTACATACAAGATTCAT
CCCACACAGTTGTGTTTCCTGTGTCGGTAGCTTTCACCAAGCTGTTTCCTTGTTGGCAGTGTTA
CATCAATTTAAAACAGAGCCAAACAGCCACCTCTTTAAAAGTAACGCTACTGGTTTCTTTATGC
TATGCAAACACATCTTGTCTCTTTTTGAGTAGTGCTTGGTAGTGAACCGAGTCTTGTACATGCT
AACCATGTACTCTTCAGTTCCTTTTCTGTATTCCTGTTGAGAGCAGTCTAAAACGAGAAGAATG
GTACAGACTGTTCAAAGAGAAATTTACTAGAACCATGAATCAAGCTTTTGGCTGAGAACTAGCC
AGCAGCCCTGTATTTGTGCTGTGGTGTAATGTCCTGAGAGGGACTTAATTGGCCTGGTGGGTGG
CACCCTGCCCGTACTGTTCACATATTGCAGCGTGTGACACAGCATTTCCCATGTCCTCTGTGAT
CGGCAGCCCCTTCACCTTGCTTTCCAAGATCAAATACACAGATAAATATTAGCATTTATAGACT
GACAACCTGAGATAAATGTTACCGAGCAGAGGTGACTGTGTAAGTTACGCTTATTCAGAAAGAG
TAGGCATAGTATCAGAAAATCATTTAACAGAATTTAGCAGGAGAAACACTCTTTCTCCCACTCA
CGAATTTTTTAATAATTTTTACTGGGGAGGGGGTGGCCTAGACACCATCTTCTCTTCTCAGGAG
GATTTAGAATGCTGAGAGAGGAAGGAATTGGACTGTTTCCTTTGGAATTCTGCCTCACCACCAC
CACCACCCCCCCAGGGAAAATGTCCCAAAAAGCTCCTGATGACCAGGCACTTCTTTATACTGAC
AGCTGTCTGTGAAATGTTAATGGATTTCCTGGCAAATAAAGCAGGGCAGGACCCTCCTTTAAGC
ATTACTTTGCTAAAGCTTTCCCCAACTTCAATTCAGAAGACTCTTGGAGAAATTTTATAAAGGA
ATTGTTCATAAGAAATTTGCTTACTGGTGACCACGTGGGCCATGTGGGTCACTGACTCCCCCTC
CCCTAGGTACAGGGCCCAGAGATAAGGCAAGTCATGTCTTGCTGGGGAGGGTGTGTACCAACAA
GAAACAGGAAGCTGTGTTTCAACCGACTGGCCTGGCTGCTTTGCCTGGAGCTTTCTAACCCAGA
GTCAGGTGTGCTGAGGTCCTTCCGCAGAGGACACTGCCTTTCTGAGCTGGCAACACTCGCCTAG
CACAAGTATCCTTAATTGCTGTGCAGAGAAAACTATGACCGCACTACAGCTTAAGGAGCTTTCA
CAGTCGGGCCTCTACCGGAGAAGGCGAGAGCGTCCTGATAGTCTGAGAGTCAATGGGCTCCCAG
AGGAAGAGCTGAGCTCCTCGGTGATGATAACGCCATTTGTGTTTCTGCTCCTCTTCTCTCCTAA
TTTGCGGAGAATCACTCTCCATATTTACAGTGCAGTTAAAACAAAGACTAGCAACATGGCCAAT
GCTTTGGCCAGTGCCACGTGTGAACGCTGCAAGGGGGGCTTTGACCCTGCTGAGAAGATCGTGA
ACAGTAATGGTGAGCTGTACCATGAACAGTGTTTCGTGTGTGCTCAGTGCTTCCAGCAGTTCCC
AGAAGGACTCTTTTATGAGTTTGAAGGAAGAAAGTACTGTGAGCATGATTTCCAGATGCTCTTT
GCTCCCTGCTGCCACCAGTGTGGTGAATTCATCATTGGCAGGGTTATCAAAGCCATGAACAACA
GCTGGCATCCTGAGTGCTTCAGATGTGACCTCTGCCAGGAAGTGCTGGCAGACATAGGGTTTGT
CAAGAATGCTGGCAGACACCTGTGTCGCCCATGTCATAATCGTGAAAAGGCCAGAGGCCTTGGA
AAATACATCTGCCAGAAATGCCATGCCATCATTGATGAACAGCCTTTGATTTTCAAGAACGACC
CTTACCACCCAGACCACTTCAACTGTGCCAACTGCGGGAAGGAGCTAACTGCTGATGCTCGGGA
GCTGAAAGGGGAGCTATACTGTCTGCCATGTCATGATAAGATGGGGGTCCCTATCTGTGGCGCC
TGCCGGAGGCCCATTGAAGGGCGAGTAGTGAATGCCATGGGCAAGCAATGGCATGTGGAGCATT
TTGTTTGTGCCAAATGTGAAAAACCATTTCTTGGACATCGCCATTATGAGAGGAAGGGCTTGGC
CTATTGTGAGACTCACTATAATCAGCTATTTGGTGATGTTTGTTTCCATTGCAACCGTGTCATA
GAAGGTGACGTGGTCTCTGCCCTCAACAAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCCACTT
GCAATACCAAACTAACACTCAAGGATAAGTTTGTTGCAATTGATCTAAAGCCAGTCTGCAAATA
CTGTTATGAGAAAATGCCAGAAGAGCTTAAGAGGCGACTTGCCAGACGGGAGAGAGAAGCAAGG
GATAAAGAGAAGCAGAGAAAGAGAAAGCCAGTGTGTCTGTAACCGTTCTATCCCTTCCACACCA
TTCTCACTGCTTCTCTGTGGAATAAATTTGTGGAGTTTGACATGAAACCAGTCTGTAAGAAGTG
CTACGAGAAATTTCCTTTGGAGCTGAAGAAAAGACTTAAGAAAC

hide sequence

RefSeq Acc Id:

XM_017601763 ⟹ XP_017457252

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,910,501 - 26,961,607 (+)	NCBI
mRatBN7.2	20	26,367,395 - 26,418,511 (+)	NCBI
Rnor_6.0	20	27,952,803 - 28,004,767 (+)	NCBI

Sequence:

show sequence

ATTAAAAAAGAAGAAAAGATCTTCTGTGTTCTACTGTATTATACACTCTGCTGTGCACTGGGGC
TGGGGCTGTATTTCCTCCTGGTAGTGCTGTAGGCCAGCTTGGAGGCTGAATGCTAGTCAATAGT
GTATTTTCCAGCAGTTTGTGAAATTTTCTTTCAAAGTTGTGGAATGCCTGTTGGTGCCTGTGTG
TTCTTACCTAGCTCCCTTTACAGTGTGCAGCAGTATGCATCTGCACAGGTCGAGGAGAAAAGTA
AAGTACCCCCACCTCCTCTCCCTCTCTTCCTCCCTCTGTCCATCTGTCTTCATGAAGACAATGG
TTTAAAGAGCCTTCAGCAAAGGCTCAGAATTTAATTTTATTCTTTGTAGCAGTTTCATTGTAGC
ATACACGTTGACTTACTGAAATTCCTACTTGTCAGCCCAGCCATTTGAAAAGTCAGAGGGTAAC
AGTTGTCATAGCTTGTTTGTTACGAGCTTGGAACTGGTCTTTTTGTTACTGTTGGAGCTTAGAA
CTGGTCTTTTTGTTACTGTCTTCACATCCTTCTAACCACAGACTCTACATACAAGATTCATCCC
ACACAGTTGTGTTTCCTGTGTCGGTAGCTTTCACCAAGCTGTTTCCTTGTTGGCAGTGTTACAT
CAATTTAAAACAGAGCCAAACAGCCACCTCTTTAAAAGTAACGCTACTGGTTTCTTTATGCTAT
GCAAACACATCTTGTCTCTTTTTGAGTAGTGCTTGGTAGTGAACCGAGTCTTGTACATGCTAAC
CATGTACTCTTCAGTTCCTTTTCTGTATTCCTGTTGAGAGCAGTCTAAAACGAGAAGAATGGTA
CAGACTGTTCAAAGAGAAATTTACTAGAACCATGAATCAAGCTTTTGGCTGAGAACTAGCCAGC
AGCCCTGTATTTGTGCTGTGGTGTAATGTCCTGAGAGGGACTTAATTGGCCTGGTGGGTGGCAC
CCTGCCCGTACTGTTCACATATTGCAGCGTGTGACACAGCATTTCCCATGTCCTCTGTGATCGG
CAGCCCCTTCACCTTGCTTTCCAAGATCAAATACACAGATAAATATTAGCATTTATAGACTGAC
AACCTGAGATAAATGTTACCGAGCAGAGGTGACTGTGTAAGTTACGCTTATTCAGAAAGAGTAG
GCATAGTATCAGAAAATCATTTAACAGAATTTAGCAGGAGAAACACTCTTTCTCCCACTCACGA
ATTTTTTAATAATTTTTACTGGGGAGGGGGTGGCCTAGACACCATCTTCTCTTCTCAGGAGGAT
TTAGAATGCTGAGAGAGGAAGGAATTGGACTGTTTCCTTTGGAATTCTGCCTCACCACCACCAC
CACCCCCCCAGGGAAAATGTCCCAAAAAGCTCCTGATGACCAGGCACTTCTTTATACTGACAGC
TGTCTGTGAAATGTTAATGGATTTCCTGGCAAATAAAGCAGGGCAGGACCCTCCTTTAAGCATT
ACTTTGCTAAAGCTTTCCCCAACTTCAATTCAGAAGACTCTTGGAGAAATTTTATAAAGGAATT
GTTCATAAGAAATTTGCTTACTGGTGACCACGTGGGCCATGTGGGTCACTGACTCCCCCTCCCC
TAGGTACAGGGCCCAGAGATAAGGCAAGTCATGTCTTGCTGGGGAGGGTGTGTACCAACAAGAA
ACAGGAAGCTGTGTTTCAACCGACTGGCCTGGCTGCTTTGCCTGGAGCTTTCTAACCCAGAGTC
AGGTGTGCTGAGGTCCTTCCGCAGAGGACACTGCCTTTCTGAGCTGGCAACACTCGCCTAGCAC
AAGTATCCTTAATTGCTGTGCAGAGAAAACTATGACCGCACTACAGCTTAAGGAGCTTTCACAG
TCGGGCCTCTACCGGAGAAGGCGAGAGCGTCCTGATAGTCTGAGAGTCAATGGGCTCCCAGAGG
AAGAGCTGAGCTCCTCGGTGATGATAACGCCATTTGTGTTTCTGCTCCTCTTCTCTCCTAATTT
GCGGAGAATCACTCTCCATATTTACAGTGCAGTTAAAACAAAGACTAGCAACATGGCCAATGCT
TTGGCCAGTGCCACGTGTGAACGCTGCAAGGGGGGCTTTGACCCTGCTGAGAAGATCGTGAACA
GTAATGGTGAGCTGTACCATGAACAGTGTTTCGTGTGTGCTCAGTGCTTCCAGCAGTTCCCAGA
AGGACTCTTTTATGAGTTTGAAGGAAGAAAGTACTGTGAGCATGATTTCCAGATGCTCTTTGCT
CCCTGCTGCCACCAGTGTGGTGAATTCATCATTGGCAGGGTTATCAAAGCCATGAACAACAGCT
GGCATCCTGAGTGCTTCAGATGTGACCTCTGCCAGGAAGTGCTGGCAGACATAGGGTTTGTCAA
GAATGCTGGCAGACACCTGTGTCGCCCATGTCATAATCGTGAAAAGGCCAGAGGCCTTGGAAAA
TACATCTGCCAGAAATGCCATGCCATCATTGATGAACAGCCTTTGATTTTCAAGAACGACCCTT
ACCACCCAGACCACTTCAACTGTGCCAACTGCGGGAAGGAGCTAACTGCTGATGCTCGGGAGCT
GAAAGGGGAGCTATACTGTCTGCCATGTCATGATAAGATGGGGGTCCCTATCTGTGGCGCCTGC
CGGAGGCCCATTGAAGGGCGAGTAGTGAATGCCATGGGCAAGCAATGGCATGTGGAGCATTTTG
TTTGTGCCAAATGTGAAAAACCATTTCTTGGACATCGCCATTATGAGAGGAAGGGCTTGGCCTA
TTGTGAGACTCACTATAATCAGCTATTTGGTGATGTTTGTTTCCATTGCAACCGTGTCATAGAA
GGTGACGTGGTCTCTGCCCTCAACAAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCCACTTGCA
ATACCAAACTAACACTCAAGAATAAATTTGTGGAGTTTGACATGAAACCAGTCTGTAAGAAGTG
CTACGAGAAATTTCCTTTGGAGCTGAAGAAAAGACTTAAGAAACTATCTGAGACCTTAGGAAGG
AAATAACTTTTGGTGTCTTTTTTCTCTTTCTTTTAACCAATATTACTTAACCTGATCCACCCTC
ATCTACTTTTGCTTAAAACTGTATCAAAGCATTAGAGAGAATGGTTCTCTTCATTTCTCTTTTC
TCATTTAAAATGAAAGAACATGTTTATTTCCATGTAAAACACAGATGAAATCAGGACTTTCATT
TCTTTAGCCATATTAGTAGTAGGCATTAATAGTATATAGCCAAAAAGCAAAACAAACAAAAAAA
GTTGAAGGGTAGTTTTAATTAAGCCCTCCAAAATATAAATTTAACTCTTCAGAATTAAACACCC
TGCTCTATGGACCAACAGAAGCACTTGCTGCCAAACCTAGTGGACTCCTTGAGAAAGTATCTGT
GGCCATGTCCATGTGGGTCATGTGGAGCGAGAACTCACTCCCACAGTTGTCCTCTAAGCTCCAC
AGACGGCCGTGGTGCATTGCGCTGACACACATAATTCATAAACGTAATAAACAACCACTGTTCT
AAAGAGTCAGCTCTTACATGACTCCCATTTTAAAGGACTCTAAGCTTTGCTTTCCTTTATAGCA
TAAGAAAATAATTTCCTATTCATATGCTGGGAGAGGAGATAAGTAAACTACCAAAATAGCTCCT
ATGTATAATCATGTGTTTATCCAGTTAGCACTGTAAAAGGAACATACATATTACTAAGAAGCAA
AAAATTTTCAGAGTATTTTGATTTTTTTAATTAAATCACTATGCTTAATCTTCTATTTTGTTCT
CCTTATAAATTTTTCCTTCATAAATTACTTAACATACTTATAGCTACTAATGAGTCTTTTACAT
TTTTTGAGCAAAACAAAACAAATTGTCAGGAAAATATTGCATACATTGTGATACTGATGAAATG
AAGCATTTTAAAAATATATTACACAATTGTGCTTCTAAACTTAATGTAAAATGCATAGTATTCA
AGTGGGACATGAAATGCACTATTATGCAGCTTGAAATGTATCGATTTCCAAAGTGAGTGTGAGC
CGGGTGCAGCGGCACTAGGCGTCGATCCCGGCACTCTGGAGGCAGAGGCAGGCAGATCTCTGAG
TCCTAGGCCAGCCAGGGTTGCGGATTAAAACCTTGACCGTATCTCATATTACCTTTGTGCTAAT
ATCTACATAATCTAACTTGCCTTAGAAAACTGCATCTTCTAATCAGGAATTCTAGATATTCCTA
TAATACCAAATTAAGTATTTTGACTGAGATTCATAAATTTAGAATCATTTGCCACTGATTAAAA
CTTTAAAAATTCTTTTCTCAGGAAGCCAATGAAAGTTAACTTCTATCCTATTATTAGAACTATG
CAGATATATTAAAACATTTTAATGAAGGCTTTTTCATTTCAAATGTATAACTGGGTTTTATTTA
CTATAAAGTAATAAAACTATATAAATGATACTTTTAGATTGAAAGAGGGTAGTAAGAGTAGCAA
ATCCTAAGTTACAGTGTGAGATGCTATCTCCCAAAACATCCTCACAAACAAAAACACTAGTGTA
TCATTTCACCATAAAGAATACCTCAGGAGCCTAGGACAAAACTCAGTAATGGAGTCACACCAGC
CTTAGGACCTGAGTTTGAACTTGGAGACAAGTTGTTCTCTGGATTTACAAGGTAGCCAACTCAG
CCTAACTAGCGAGCCCCAGATCCAAGGGCTCAATCCTGTATCAAAAAAAGCAAGGTGGATGGCT
CCTGAGGAATGACAGCCAAGACTGACATCTGGCTTCCACATCCACACACACATATGCACACATT
CAGAAATATAGATGTATACACAAAAAAGATATCTCAGGATGCTGTTACTCTGCCATTAAAAGTT
TGCAATCGTGAATTTTTAAAATACTTGGTTATGCACATTGTAGAATACATTTCTGTTCATATAA
CTAACTTGTAACCAATCTTAATAGTCTTTCTTAATAGTCTTTGGGAATTAAGAGAGTCATAGGT
GATTAAAATGTATATGCTTTGTATTTGTGTTTAGCATTTTAAATCTGTCTTTACTTCTGATAAT
AAGAACCCACATTTCTTCGGTGTGCCTTTGTCAGCTAAGAATGTCAAGCAGTGATTACCTTAAA
AGTATTTATGAACTATTGTACGTGCATTTAGGCAAATAGAGTTTGTAGCCCAGGGTCCTGGTGC
TAAATTCTTACATGCCTCACTAGAAGTATGGAGCAGAAAAGCAGGCGTTCCTGTGCTTTCCCCA
TCTCTTTAGATGTGCGTGGCCTTGCCTGACTGCCTTTGCTTGTGTGACATCACTTAGCCAGAGT
CCCCACTGCTGGCTTTGCTCACTTCTCTTTAGACAATATTCCAGTAAGCTTGATCTCATAATTA
TGTAGTAATTCATCTAGAGATGGTGCCTTTCACTGTGGGGTATAACATTAGAGCCCTTAGTAAG
GAAGGAGATGGAGGTCTAAATGGGGCCAAGACAAAGACTTTATCTAGTTCCTATTAATTGTAGG
CTTTCACTGGCTGCTGGCATTTGTCATTGAACATCTCTGAGTTTCTGAGAACAATCTGAAGTAA
TTCATTGTGCTTATGAAATTTCTAAGTGCCCTTTTTGTCCTTAGTTACCATAATGTAACATGGA
AAATGGATACACAAAAAATATTTTGTGTGTCATATTCAAAGCCTTATTAATACTTTGCCTGAAA
TAGGACATTTTGCCTCATTCATTTGCCAAAGTAGCCAATTCCAAAATAAGGAAACTTTGATGTG
GGCTGACAATATTCTTGTGTTTTATTTTAGATTGTAAACTTGATGGTAAGAAATTATATCAATA
ATTGTGCTTTTTATGTACCAACCATTGCTGTGTACTTTTGGTGCTTAATAAATATTCATAATTA
TTATAGTGA

hide sequence

RefSeq Acc Id:

XM_063279472 ⟹ XP_063135542

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,908,999 - 26,961,607 (+)	NCBI

RefSeq Acc Id:

XM_063279473 ⟹ XP_063135543

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,932,363 - 26,961,607 (+)	NCBI

RefSeq Acc Id:

XM_063279474 ⟹ XP_063135544

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,876,803 - 26,961,607 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001138928	(Get FASTA)	NCBI Sequence Viewer
	NP_001402084	(Get FASTA)	NCBI Sequence Viewer
	XP_006256447	(Get FASTA)	NCBI Sequence Viewer
	XP_006256449	(Get FASTA)	NCBI Sequence Viewer
	XP_006256450	(Get FASTA)	NCBI Sequence Viewer
	XP_006256451	(Get FASTA)	NCBI Sequence Viewer
	XP_006256452	(Get FASTA)	NCBI Sequence Viewer
	XP_017457250	(Get FASTA)	NCBI Sequence Viewer
	XP_017457252	(Get FASTA)	NCBI Sequence Viewer
	XP_063135542	(Get FASTA)	NCBI Sequence Viewer
	XP_063135543	(Get FASTA)	NCBI Sequence Viewer
	XP_063135544	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ACN25147	(Get FASTA)	NCBI Sequence Viewer
	ACN25148	(Get FASTA)	NCBI Sequence Viewer
	EDL93089	(Get FASTA)	NCBI Sequence Viewer
	EDL93090	(Get FASTA)	NCBI Sequence Viewer
	EDL93091	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062647
	ENSRNOP00000062647.1
	ENSRNOP00000073371.1
	ENSRNOP00000078506
	ENSRNOP00000078506.1
	ENSRNOP00000078972
	ENSRNOP00000078972.1
	ENSRNOP00000080693
	ENSRNOP00000080693.1
	ENSRNOP00000082999
	ENSRNOP00000082999.1
	ENSRNOP00000087973
	ENSRNOP00000087973.1

RefSeq Acc Id:	NP_001138928 ⟸ NM_001145456
- Peptide Label:	isoform 1
- UniProtKB:	C0KUC5 (UniProtKB/TrEMBL), A0A8I6GA69 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTALQLKELSQSGLYRRRRERPDSLRVNGLPEEELSNMANALASATCERCKGGFDPAEKIVNSN GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYH PDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVC AKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNT KLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLSETLGRK hide sequence

RefSeq Acc Id:	XP_006256451 ⟸ XM_006256389
- Peptide Label:	isoform X6
- UniProtKB:	A6K3T3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLGVAAGMTNSNMANALASATCERCKGGFDPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYE FEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRH LCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELY CLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHY NQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVAIDLKPVCKYCYEKMP EELKRRLARREREARDKEKQRKRKPVCL hide sequence

RefSeq Acc Id:	XP_006256452 ⟸ XM_006256390
- Peptide Label:	isoform X8
- UniProtKB:	A6K3T3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANALASATCERCKGGFDPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ MLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAR GLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPI CGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCN RVIEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVAIDLKPVCKYCYEKMPEELKRRLARRER EARDKEKQRKRKPVCL hide sequence

RefSeq Acc Id:	XP_006256450 ⟸ XM_006256388
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6GA69 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTALQLKELSQSGLYRRRRERPDSLRVNGLPEEELSNMANALASATCERCKGGFDPAEKIVNSN GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWH PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYH PDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVC AKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNT KLTLKDKFVAIDLKPVCKYCYEKMPEELKRRLARREREARDKEKQRKRKPVCL hide sequence

RefSeq Acc Id:	XP_006256447 ⟸ XM_006256385
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A6W3 (UniProtKB/TrEMBL), A6K3T3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAFPGRARPSTIPENEEIPQTALNSVLEANGNEDERAVSNLQRRHSDIKVYKEFCDFYAKFNMA NALASATCERCKGGFDPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML FAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGL GKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICG ACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRV IEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVAIDLKPVCKYCYEKMPEELKRRLARREREA RDKEKQRKRKPVCL hide sequence

RefSeq Acc Id:	XP_006256449 ⟸ XM_006256387
- Peptide Label:	isoform X4
- UniProtKB:	C0KUC6 (UniProtKB/TrEMBL), A6K3T3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAFPGRARPSTIPENEEIPQTALNSVLEANGNEDERAVSNLQRRHSDIKVYKEFCDFYAKFNMA NALASATCERCKGGFDPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML FAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGL GKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICG ACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRV IEGDVVSALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLSETL GRK hide sequence

RefSeq Acc Id:	XP_017457250 ⟸ XM_017601761
- Peptide Label:	isoform X1
- UniProtKB:	A6K3T3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTALQLKELSQSGLYRRRRERPDSLRVNGLPEEELSSSVMITPFVFLLLFSPNLRRITLHIYSA VKTKTSNMANALASATCERCKGGFDPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK YCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPC HNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCH DKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG DVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVAIDLKPVCKYCYEKMPEELKR RLARREREARDKEKQRKRKPVCL hide sequence

RefSeq Acc Id:	XP_017457252 ⟸ XM_017601763
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZKY9 (UniProtKB/TrEMBL), A0A8I6GA69 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTALQLKELSQSGLYRRRRERPDSLRVNGLPEEELSSSVMITPFVFLLLFSPNLRRITLHIYSA VKTKTSNMANALASATCERCKGGFDPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK YCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPC HNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCH DKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG DVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKK RLKKLSETLGRK hide sequence

Ensembl Acc Id:

ENSRNOP00000073371 ⟸ ENSRNOT00000092075

Ensembl Acc Id:

ENSRNOP00000062647 ⟸ ENSRNOT00000064288

Ensembl Acc Id:

ENSRNOP00000078506 ⟸ ENSRNOT00000112599

Ensembl Acc Id:

ENSRNOP00000080693 ⟸ ENSRNOT00000105423

Ensembl Acc Id:

ENSRNOP00000082999 ⟸ ENSRNOT00000098893

Ensembl Acc Id:

ENSRNOP00000078972 ⟸ ENSRNOT00000094679

Ensembl Acc Id:

ENSRNOP00000087973 ⟸ ENSRNOT00000101365

RefSeq Acc Id:	NP_001402084 ⟸ NM_001415155
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I6GA69 (UniProtKB/TrEMBL), A0A8I5ZPU7 (UniProtKB/TrEMBL), A6K3T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135544 ⟸ XM_063279474
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6GA69 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135542 ⟸ XM_063279472
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063135543 ⟸ XM_063279473
- Peptide Label:	isoform X9
- UniProtKB:	A6K3T3 (UniProtKB/TrEMBL)

Protein Domains

LIM zinc-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-C0KUC6-F1-model_v2	AlphaFold	C0KUC6	1-387	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701585

Promoter ID:

EPDNEW_R12104

Type:

single initiation site

Name:

Lims1_1

Description:

LIM zinc finger domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	27,975,566 - 27,975,626	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560732	AgrOrtholog
BioCyc Gene	G2FUF-3787	BioCyc
Ensembl Genes	ENSRNOG00000037765	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064288	ENTREZGENE
	ENSRNOT00000064288.4	UniProtKB/TrEMBL
	ENSRNOT00000092075.2	UniProtKB/TrEMBL
	ENSRNOT00000094679	ENTREZGENE
	ENSRNOT00000094679.1	UniProtKB/TrEMBL
	ENSRNOT00000098893	ENTREZGENE
	ENSRNOT00000098893.1	UniProtKB/TrEMBL
	ENSRNOT00000101365	ENTREZGENE
	ENSRNOT00000101365.1	UniProtKB/TrEMBL
	ENSRNOT00000105423	ENTREZGENE
	ENSRNOT00000105423.1	UniProtKB/TrEMBL
	ENSRNOT00000112599	ENTREZGENE
	ENSRNOT00000112599.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	LIMS1/2-like_LIM1	UniProtKB/TrEMBL
	PINCH-1-4-like	UniProtKB/TrEMBL
	PINCH-1/2-like	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	499443	ENTREZGENE
PANTHER	LIM AND SENESCENT CELL ANTIGEN-LIKE-CONTAINING DOMAIN PROTEIN	UniProtKB/TrEMBL
	LIM AND SENESCENT CELL ANTIGEN-LIKE-CONTAINING DOMAIN PROTEIN 1	UniProtKB/TrEMBL
	PTHR24210	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PhenoGen	Lims1	PhenoGen
PIRSF	PINCH	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000037765	RatGTEx
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	A0A8I5ZKY9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZPU7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZR99_RAT	UniProtKB/TrEMBL
	A0A8I6A6W3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GA69	ENTREZGENE, UniProtKB/TrEMBL
	A6K3T1	ENTREZGENE, UniProtKB/TrEMBL
	A6K3T3	ENTREZGENE, UniProtKB/TrEMBL
	C0KUC5	ENTREZGENE, UniProtKB/TrEMBL
	C0KUC6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Lims1	LIM and senescent cell antigen-like domains 1	RGD1560732_predicted	similar to LIM and senescent cell antigen-like domains 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560732_predicted	similar to LIM and senescent cell antigen-like domains 1 (predicted)	LOC499443	similar to LIM and senescent cell antigen-like domains 1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC499443	similar to LIM and senescent cell antigen-like domains 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations