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Gene: Specc1l (sperm antigen with calponin homology and coiled-coil domains 1-like) Rattus norvegicus

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Symbol:

Specc1l

Name:

sperm antigen with calponin homology and coiled-coil domains 1-like

RGD ID:

1309570

Description:

Predicted to enable beta-catenin binding activity. Predicted to be involved in actin cytoskeleton organization. Predicted to act upstream of or within several processes, including anterior neural tube closure; negative regulation of protein depolymerization; and positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction. Predicted to be located in cell-cell junction; cytoplasm; and cytoskeleton. Predicted to be part of filamentous actin. Predicted to be active in microtubule organizing center. Human ortholog(s) of this gene implicated in Teebi hypertelorism syndrome 1 and oblique facial clefting 1. Orthologous to human SPECC1L (sperm antigen with calponin homology and coiled-coil domains 1 like); INTERACTS WITH bisphenol A; cadmium dichloride; chlorpyrifos.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

28S ribosomal protein S7, mitochondrial-like; cytospin A; cytospin-A; Cytsa; LOC102546441; LOC361828; RGD1309570; similar to mKIAA0376 protein; SPECC1-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	13,337,399 - 13,443,080 (-)	NCBI		GRCr8
mRatBN7.2	20	13,337,983 - 13,443,665 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	13,339,692 - 13,443,665 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	14,046,241 - 14,150,210 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	13,407,064 - 13,511,031 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	13,879,707 - 13,983,644 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	14,287,470 - 14,393,879 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	14,287,457 - 14,393,793 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	16,470,744 - 16,577,173 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	13,840,439 - 13,945,178 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	13,838,941 - 13,945,405 (-)	NCBI
Celera	20	14,825,150 - 14,929,010 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Specc1l	Rat	Craniosynostosis Syndrome, Autosomal Recessive		ISO	RGD:1603682	8554872	ClinVar Annotator: match by term: Craniosynostosis syndrome	ClinVar	PMID:25741868\|PMID:28492532\|PMID:31837199
Specc1l	Rat	DiGeorge syndrome		ISO	RGD:1603682	8554872	ClinVar Annotator: match by term: Autosomal dominant Opitz G/BBB syndrome	ClinVar	PMID:25741868\|PMID:28492532
Specc1l	Rat	epilepsy		ISO	RGD:1603682	8554872	ClinVar Annotator: match by term: Epilepsy	ClinVar
Specc1l	Rat	genetic disease		ISO	RGD:1603682	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25741868\|PMID:28492532
Specc1l	Rat	intellectual disability		ISO	RGD:1603682	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar	PMID:25741868
Specc1l	Rat	oblique facial clefting 1		ISO	RGD:1603682	8554872	ClinVar Annotator: match by term: Oblique facial clefts \| ClinVar Annotator: match by term: Oculomaxillofacial more ...	ClinVar	PMID:21703590\|PMID:25741868\|PMID:28492532
Specc1l	Rat	prostate cancer		ISO	RGD:1603682	8554872	ClinVar Annotator: match by term: Malignant tumor of prostate	ClinVar	PMID:23265383
Specc1l	Rat	schizophrenia		ISO	RGD:1603682	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106\|PMID:30208311
Specc1l	Rat	Teebi hypertelorism syndrome		ISO	RGD:1603682	8554872	ClinVar Annotator: match by term: Teebi hypertelorism syndrome	ClinVar	PMID:17506099\|PMID:25412741\|PMID:25741868\|PMID:25741869\|PMID:26111080\|PMID:28492532\|PMID:30472488\|PMID:31953237
Specc1l	Rat	Teebi hypertelorism syndrome 1		ISO	RGD:1603682	8554872	ClinVar Annotator: match by term: SPECC1L-related condition \| ClinVar Annotator: match by term: Teebi hypertelorism more ...	ClinVar	PMID:25412741\|PMID:25741868\|PMID:28492532\|PMID:30472488\|PMID:31953237\|PMID:3228142\|PMID:32954677\|PMID:34302166\|PMID:36474027\|PMID:39825153

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Specc1l	Rat	oblique facial clefting 1		ISO	RGD:1603682	11554173	CTD Direct Evidence: marker/mechanism	CTD
Specc1l	Rat	Teebi hypertelorism syndrome 1		ISO	RGD:1603682	11554173	CTD Direct Evidence: marker/mechanism	CTD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Specc1l	Rat	cleft palate		ISS	RGD:1332016	13592920		MouseDO
Specc1l	Rat	Teebi hypertelorism syndrome 1		ISS	RGD:1332016	13592920	OMIM:145420	MouseDO

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Specc1l	Rat	oblique facial clefting 1		ISO	RGD:1603682	7240710		OMIM
Specc1l	Rat	Teebi hypertelorism syndrome 1		ISO	RGD:1603682	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Specc1l	Rat	17alpha-ethynylestradiol	affects expression	ISO	RGD:1332016	6480464	Ethinyl Estradiol affects the expression of SPECC1L mRNA	CTD	PMID:17555576
Specc1l	Rat	17beta-hydroxy-5alpha-androstan-3-one	increases expression	ISO	RGD:1603682	6480464	Dihydrotestosterone results in increased expression of SPECC1L mRNA	CTD	PMID:29581250
Specc1l	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1603682	6480464	Tetrachlorodibenzodioxin affects the expression of SPECC1L mRNA	CTD	PMID:22298810
Specc1l	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1332016	6480464	Tetrachlorodibenzodioxin affects the expression of SPECC1L mRNA	CTD	PMID:21570461
Specc1l	Rat	2-methylcholine	affects expression	ISO	RGD:1603682	6480464	beta-methylcholine affects the expression of SPECC1L mRNA	CTD	PMID:21179406
Specc1l	Rat	3,4-methylenedioxymethamphetamine	decreases expression	ISO	RGD:1332016	6480464	N-Methyl-3,4-methylenedioxyamphetamine results in decreased expression of SPECC1L mRNA	CTD	PMID:26251327
Specc1l	Rat	aflatoxin B1	increases expression	ISO	RGD:1332016	6480464	Aflatoxin B1 results in increased expression of SPECC1L mRNA	CTD	PMID:19770486
Specc1l	Rat	all-trans-retinoic acid	decreases expression	ISO	RGD:1603682	6480464	Tretinoin results in decreased expression of SPECC1L mRNA	CTD	PMID:33167477
Specc1l	Rat	antirheumatic drug	increases expression	ISO	RGD:1603682	6480464	Antirheumatic Agents results in increased expression of SPECC1L mRNA	CTD	PMID:24449571
Specc1l	Rat	arsane	multiple interactions	ISO	RGD:1603682	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Specc1l	Rat	arsenic atom	multiple interactions	ISO	RGD:1603682	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Specc1l	Rat	arsenite(3-)	multiple interactions	ISO	RGD:1603682	6480464	arsenite inhibits the reaction [G3BP1 protein binds to SPECC1L mRNA]	CTD	PMID:32406909
Specc1l	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	RGD:1332016	6480464	Diethylhexyl Phthalate results in decreased expression of SPECC1L mRNA	CTD	PMID:33754040
Specc1l	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of SPECC1L mRNA	CTD	PMID:25181051
Specc1l	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of SPECC1L mRNA	CTD	PMID:34947998
Specc1l	Rat	cadmium dichloride	decreases methylation	EXP		6480464	Cadmium Chloride results in decreased methylation of SPECC1L promoter	CTD	PMID:22457795
Specc1l	Rat	caffeine	affects phosphorylation	ISO	RGD:1603682	6480464	Caffeine affects the phosphorylation of SPECC1L protein	CTD	PMID:35688186
Specc1l	Rat	carbon nanotube	decreases expression	ISO	RGD:1332016	6480464	Nanotubes, Carbon results in decreased expression of SPECC1L mRNA	CTD	PMID:25554681
Specc1l	Rat	chlorpyrifos	affects expression	EXP		6480464	Chlorpyrifos affects the expression of SPECC1L mRNA	CTD	PMID:26775027
Specc1l	Rat	cisplatin	increases expression	ISO	RGD:1603682	6480464	Cisplatin results in increased expression of SPECC1L mRNA	CTD	PMID:27594783
Specc1l	Rat	coumarin	decreases phosphorylation	ISO	RGD:1603682	6480464	coumarin results in decreased phosphorylation of SPECC1L protein	CTD	PMID:35688186
Specc1l	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1603682	6480464	di-n-butylphosphoric acid affects the expression of SPECC1L mRNA	CTD	PMID:37042841
Specc1l	Rat	dioxygen	multiple interactions	ISO	RGD:1332016	6480464	[NFE2L2 protein affects the susceptibility to Oxygen] which affects the expression of SPECC1L mRNA	CTD	PMID:30529165
Specc1l	Rat	fenthion	decreases expression	ISO	RGD:1332016	6480464	Fenthion results in decreased expression of SPECC1L mRNA	CTD	PMID:34813904
Specc1l	Rat	FR900359	affects phosphorylation	ISO	RGD:1603682	6480464	FR900359 affects the phosphorylation of SPECC1L protein	CTD	PMID:37730182
Specc1l	Rat	manganese atom	multiple interactions	ISO	RGD:1603682	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Specc1l	Rat	manganese(0)	multiple interactions	ISO	RGD:1603682	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Specc1l	Rat	manganese(II) chloride	multiple interactions	ISO	RGD:1603682	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Specc1l	Rat	methidathion	decreases expression	ISO	RGD:1332016	6480464	methidathion results in decreased expression of SPECC1L mRNA	CTD	PMID:34813904
Specc1l	Rat	ozone	multiple interactions	ISO	RGD:1332016	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased more ...	CTD	PMID:34911549
Specc1l	Rat	paracetamol	affects expression	ISO	RGD:1332016	6480464	Acetaminophen affects the expression of SPECC1L mRNA	CTD	PMID:17562736
Specc1l	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of SPECC1L mRNA	CTD	PMID:33387578
Specc1l	Rat	paracetamol	increases expression	ISO	RGD:1603682	6480464	Acetaminophen results in increased expression of SPECC1L mRNA	CTD	PMID:22230336
Specc1l	Rat	paracetamol	decreases expression	ISO	RGD:1603682	6480464	Acetaminophen results in decreased expression of SPECC1L mRNA	CTD	PMID:21420995
Specc1l	Rat	perfluorohexanesulfonic acid	decreases expression	ISO	RGD:1332016	6480464	perfluorohexanesulfonic acid results in decreased expression of SPECC1L mRNA	CTD	PMID:37995155
Specc1l	Rat	pirinixic acid	multiple interactions	ISO	RGD:1332016	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in more ...	CTD	PMID:19710929
Specc1l	Rat	sodium arsenite	multiple interactions	ISO	RGD:1603682	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Specc1l	Rat	tamoxifen	affects expression	ISO	RGD:1332016	6480464	Tamoxifen affects the expression of SPECC1L mRNA	CTD	PMID:17555576
Specc1l	Rat	titanium dioxide	decreases expression	ISO	RGD:1332016	6480464	titanium dioxide results in decreased expression of SPECC1L mRNA	CTD	PMID:23557971
Specc1l	Rat	titanium dioxide	decreases methylation	ISO	RGD:1603682	6480464	titanium dioxide results in decreased methylation of SPECC1L gene	CTD	PMID:34973136
Specc1l	Rat	titanium dioxide	decreases methylation	ISO	RGD:1332016	6480464	titanium dioxide results in decreased methylation of SPECC1L promoter	CTD	PMID:35295148
Specc1l	Rat	triptonide	affects expression	ISO	RGD:1332016	6480464	triptonide affects the expression of SPECC1L mRNA	CTD	PMID:33045310
Specc1l	Rat	tungsten	decreases expression	ISO	RGD:1332016	6480464	Tungsten results in decreased expression of SPECC1L mRNA	CTD	PMID:30912803
Specc1l	Rat	urethane	increases expression	ISO	RGD:1603682	6480464	Urethane results in increased expression of SPECC1L mRNA	CTD	PMID:28818685
Specc1l	Rat	vinclozolin	increases expression	EXP		6480464	vinclozolin results in increased expression of SPECC1L mRNA	CTD	PMID:20566332

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Specc1l	Rat	actin cytoskeleton organization	involved_in	IBA	FB:FBgn0025633\|MGI:1921642\|PANTHER:PTN004614690	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Specc1l	Rat	actin cytoskeleton organization	acts_upstream_of_or_within	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	actin cytoskeleton organization	acts_upstream_of_or_within	ISO	RGD:1332016	1624291	MGI:4124253 PMID:21703590, PMID:26787558	RGD	PMID:21703590\|PMID:26787558
Specc1l	Rat	adherens junction organization	acts_upstream_of_or_within	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	adherens junction organization	acts_upstream_of_or_within	ISO	RGD:1332016	1624291	MGI:4124253 PMID:26787558	RGD	PMID:26787558
Specc1l	Rat	anterior neural tube closure	acts_upstream_of_or_within	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	anterior neural tube closure	acts_upstream_of_or_within	ISO	RGD:1332016	1624291	MGI:4124253\|MGI:4128888 PMID:26787558	RGD	PMID:26787558
Specc1l	Rat	cell adhesion	acts_upstream_of_or_within	ISO	RGD:1603682	1624291	PMID:21703590	RGD	PMID:21703590
Specc1l	Rat	cell division	involved_in	IEA	UniRule:UR001376791	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Specc1l	Rat	cell division	involved_in	IEA	UniProtKB-KW:KW-0132	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Specc1l	Rat	cell migration	acts_upstream_of_or_within	ISO	RGD:1332016	1624291	PMID:21703590	RGD	PMID:21703590
Specc1l	Rat	cell migration	acts_upstream_of_or_within	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	negative regulation of actin filament depolymerization	acts_upstream_of_or_within	ISO	RGD:1332016	1624291	PMID:21703590	RGD	PMID:21703590
Specc1l	Rat	negative regulation of actin filament depolymerization	acts_upstream_of_or_within	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	negative regulation of microtubule depolymerization	acts_upstream_of_or_within	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	negative regulation of microtubule depolymerization	acts_upstream_of_or_within	ISO	RGD:1332016	1624291	PMID:21703590	RGD	PMID:21703590
Specc1l	Rat	neural crest cell delamination	acts_upstream_of_or_within	ISO	RGD:1332016	1624291	MGI:4124253\|MGI:4128888 PMID:26787558	RGD	PMID:26787558
Specc1l	Rat	neural crest cell delamination	acts_upstream_of_or_within	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	acts_upstream_of_or_within	ISO	RGD:1332016	1624291	MGI:4124253 PMID:26787558	RGD	PMID:26787558
Specc1l	Rat	positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	acts_upstream_of_or_within	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Specc1l	Rat	actin cytoskeleton	located_in	ISO	RGD:1603682\|UniProtKB:Q69YQ0-1\|UniProtKB:Q69YQ0-2	1624291		RGD	GO_REF:0000052
Specc1l	Rat	actin cytoskeleton	located_in	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	actin cytoskeleton	located_in	ISO	RGD:1332016	1624291	PMID:21703590	RGD	PMID:21703590
Specc1l	Rat	anchoring junction	located_in	IEA	UniProtKB-KW:KW-0965	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Specc1l	Rat	cell-cell junction	located_in	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	cell-cell junction	located_in	ISO	RGD:1332016	1624291	PMID:26787558	RGD	PMID:26787558
Specc1l	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Specc1l	Rat	cytoplasm	located_in	ISO	RGD:1332016	1624291	PMID:26787558	RGD	PMID:26787558
Specc1l	Rat	cytoplasm	located_in	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	cytoplasm	located_in	IEA	UniRule:UR001376791	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Specc1l	Rat	cytoskeleton	located_in	IEA	UniProtKB-SubCell:SL-0090	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Specc1l	Rat	cytoskeleton	located_in	IEA	UniProtKB-KW:KW-0206	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Specc1l	Rat	filamentous actin	part_of	IBA	MGI:1921642\|PANTHER:PTN004614690	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Specc1l	Rat	filamentous actin	part_of	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	filamentous actin	part_of	ISO	RGD:1332016	1624291	PMID:21703590	RGD	PMID:21703590
Specc1l	Rat	gap junction	located_in	IEA	UniProtKB-SubCell:SL-0124	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Specc1l	Rat	gap junction	located_in	IEA	UniRule:UR001376791	1600115	GO_REF:0000104	UniProt	GO_REF:0000104
Specc1l	Rat	gap junction	located_in	IEA	UniProtKB-KW:KW-0303	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Specc1l	Rat	microtubule cytoskeleton	located_in	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	microtubule cytoskeleton	located_in	ISO	RGD:1332016	1624291	PMID:21703590	RGD	PMID:21703590
Specc1l	Rat	microtubule organizing center	located_in	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	microtubule organizing center	located_in	ISO	RGD:1332016	1624291	PMID:21703590	RGD	PMID:21703590
Specc1l	Rat	microtubule organizing center	is_active_in	IBA	MGI:1921642\|PANTHER:PTN004614690	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Specc1l	Rat	spindle	located_in	IEA	UniProtKB-SubCell:SL-0251	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Specc1l	Rat	spindle	located_in	IEA	UniRule:UR001376791	1600115	GO_REF:0000104	UniProt	GO_REF:0000104

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Specc1l	Rat	beta-catenin binding	enables	IEA	UniProtKB:Q2KN98\|ensembl:ENSMUSP00000151322	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Specc1l	Rat	beta-catenin binding	enables	ISO	RGD:1332016	1624291	PR:Q02248 PMID:26787558	RGD	PMID:26787558
Specc1l	Rat	protein binding	enables	ISO	RGD:1603682	1624291	UniProtKB:P15622-3\|UniProtKB:Q13573\|UniProtKB:Q14241\|UniProtKB:Q15911-2\|UniProtKB:Q7L622\|UniProtKB:Q8N7B9-2\|UniProtKB:Q9BZL4 PMID:28514442, PMID:32296183, PMID:33961781	RGD	PMID:28514442\|PMID:32296183\|PMID:33961781

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:21703590	PMID:26787558	PMID:32357304	PMID:35352799

Specc1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	13,337,399 - 13,443,080 (-)	NCBI		GRCr8
mRatBN7.2	20	13,337,983 - 13,443,665 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	13,339,692 - 13,443,665 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	14,046,241 - 14,150,210 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	13,407,064 - 13,511,031 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	13,879,707 - 13,983,644 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	14,287,470 - 14,393,879 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	14,287,457 - 14,393,793 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	16,470,744 - 16,577,173 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	13,840,439 - 13,945,178 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	13,838,941 - 13,945,405 (-)	NCBI
Celera	20	14,825,150 - 14,929,010 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

SPECC1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	24,270,831 - 24,417,738 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	24,270,817 - 24,417,739 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	24,666,799 - 24,813,706 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	22,996,866 - 23,143,221 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	8,467,175 - 8,613,432 (+)	NCBI		Celera
Cytogenetic Map	22	q11.23	NCBI
HuRef	22	7,616,847 - 7,763,724 (+)	NCBI		HuRef
CHM1_1	22	24,625,424 - 24,772,401 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	24,732,441 - 24,879,351 (+)	NCBI		T2T-CHM13v2.0

Specc1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	75,047,872 - 75,148,234 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	75,047,905 - 75,148,577 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	75,212,037 - 75,312,400 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	75,212,073 - 75,312,743 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	74,674,818 - 74,775,145 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	74,674,412 - 74,756,109 (+)	NCBI		MGSCv36	mm8
Celera	10	76,258,909 - 76,359,489 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	38.51	NCBI

Specc1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	7,739,463 - 7,882,427 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	7,739,105 - 7,879,489 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPECC1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	34,057,976 - 34,206,240 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	36,791,660 - 36,937,339 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	5,078,435 - 5,224,090 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	21,943,630 - 22,089,686 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	21,943,630 - 22,089,686 (+)	Ensembl	panpan1.1		panPan2

SPECC1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	27,994,278 - 28,127,383 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	28,025,987 - 28,125,695 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	27,101,372 - 27,201,064 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	29,398,465 - 29,531,216 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	29,398,488 - 29,531,202 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	27,513,613 - 27,612,876 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	27,130,906 - 27,230,482 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	28,119,986 - 28,219,566 (+)	NCBI		UU_Cfam_GSD_1.0

Specc1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	142,161,078 - 142,305,767 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	448,303 - 593,001 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936619	448,304 - 592,981 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPECC1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	49,333,009 - 49,463,963 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	49,332,937 - 49,463,965 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	52,782,692 - 52,909,765 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPECC1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	7,488,821 - 7,539,961 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	7,488,832 - 7,539,952 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666085	4,919,762 - 5,063,070 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Specc1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	9,705,081 - 9,837,535 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	9,687,369 - 9,837,344 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Specc1l
527 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	119
Count of miRNA genes:	88
Interacting mature miRNAs:	101
Transcripts:	ENSRNOT00000001764
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8042410	29322208	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	4606607	17617956	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	6691706	17489458	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8042410	17617956	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
9590092	Insglur9	Insulin/glucose ratio QTL 9	18.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	20	11757515	54435887	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26123605	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	4606607	17617956	Rat
631265	Iresp1	Immunoglobin response QTL1	8.3		blood anti-double stranded DNA antibody amount (VT:0004762)	serum anti-DNA antibody level (CMO:0001533)	20	9039719	13461775	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
7411652	Foco24	Food consumption QTL 24		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	11757515	54435887	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat

RH132515

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	20	13,339,366 - 13,339,583 (+)	Marker Load Pipeline
mRatBN7.2	20	13,339,950 - 13,340,167 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	14,289,438 - 14,289,654	NCBI	Rnor6.0
Rnor_5.0	20	16,472,712 - 16,472,928	UniSTS	Rnor5.0
RGSC_v3.4	20	13,840,696 - 13,840,912	UniSTS	RGSC3.4
Celera	20	14,825,407 - 14,825,623	UniSTS
RH 3.4 Map	20	154.39	UniSTS
Cytogenetic Map	20	p12	UniSTS

RH125059

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	13,345,259 - 13,346,323 (+)	MAPPER	mRatBN7.2
mRatBN7.2	8	37,172,781 - 37,173,497 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	39,932,102 - 39,932,817	NCBI	Rnor6.0
Rnor_6.0	20	14,294,748 - 14,295,811	NCBI	Rnor6.0
Rnor_5.0	20	16,478,022 - 16,479,085	UniSTS	Rnor5.0
Rnor_5.0	8	39,932,926 - 39,933,641	UniSTS	Rnor5.0
RGSC_v3.4	8	38,707,724 - 38,708,439	UniSTS	RGSC3.4
RGSC_v3.4	20	13,846,006 - 13,847,069	UniSTS	RGSC3.4
Celera	20	14,830,717 - 14,831,780	UniSTS
Celera	8	37,281,381 - 37,282,096	UniSTS
Cytogenetic Map	20	p12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001039455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_597355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY884296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001764 ⟹ ENSRNOP00000001764

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	13,339,692 - 13,443,665 (-)	Ensembl
Rnor_6.0 Ensembl	20	14,287,457 - 14,393,793 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103283 ⟹ ENSRNOP00000081153

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	13,339,692 - 13,430,130 (-)	Ensembl

RefSeq Acc Id:

NM_001039455 ⟹ NP_001034544

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,339,110 - 13,443,070 (-)	NCBI
mRatBN7.2	20	13,339,694 - 13,443,665 (-)	NCBI
Rnor_6.0	20	14,289,181 - 14,393,872 (-)	NCBI
Rnor_5.0	20	16,470,744 - 16,577,173 (-)	NCBI
RGSC_v3.4	20	13,840,439 - 13,945,178 (-)	RGD
Celera	20	14,825,150 - 14,929,010 (-)	RGD

Sequence:

show sequence

AAGGGAGACAGGGCGGGCCGAAGGAGTGGCGCTGTGGGGTTGGCTGTTGCCCTGAGGCCGGACTCAACGGACCGGGCCGCGCCACCGGGCGAGCTCGCCGCCCGGCCCCAGCCCGGAGCCAGCGAGTG
AGCGAGGCGGTGCCGCGCGGTTTGGTTGTAAATGCATCACCAAGAGGCAGCCCAGAATGAAGAAAGCAAACAGGAGTGCTGGCTCAGTGCCTAAGGTGTCTGGGATAAGCAAACCACAAACGGTAGAA
AAAAGCAAGTCTGAAAACAGCTCTTCAGCACCCACAGGAGGCAAACCTGTAAAGCCTGGGGCAGCAGCGGCCTTGTCAAAGACCAAGAGCAATGATGACCTTTTAGCTGGAATGGCTGGAGGAGTGAA
CGTGACTAATGGTGTTAAAGCCAAGAAAAGCAACTGTTCATCTGCAGCGCCTTCAGCCCCTGCCCCTGCCATGACCATCTCGGAGAGCAAGTCCAAGAGTAGCACAGGCACTAGTTCCTCAGCCAAAC
GGAGTACTTCGGCTGGTAATAAAGAGTCCAGTTCTACTAGAGAAAGATTACGTGAACGCACCCGGCTAAACCAGAGCAAAAAACTGCCCTCCGTAAGTCAGGGAGCTAACGATGTGGCACTGGCTAAG
CGCTCACGCAGCCGCACTGCTACAGAGGGTGATATTCGCATGAGCAAGTCTAAGTCGGACAATCAGATCAGTGACAAAGCTGCTTTGGAAGCCAAGGTGAAAGATCTCCTCACACTGGCGAAAACCAA
GGATGTGGAAATTTTACATTTGAGAAATGAACTCCGAGACATGCGTGCTCAGCTGGGCATTAGTGAGGACCATTGTGAAGGTGAGGACAGGTCTGAGGAGAAGGAAACCATTATTGCCCACCAGCCAA
CTGATGTGGAGTCTACCCTCCTGCAGCTGCAGGAACAGAATACAGCCATCCGCGAGGAGCTCAACCAGCTCAAGAATGAAAACAGAATGCTAAAGGACAGGCTGAATGCTTTGGGCTTTTCCCTAGAG
CAAAGGCTGGACAATTCTGAAAAACTGTTTGGCTATCAGTCCCTGAGCCCAGAAATCACCCCTGGTAACCAGAGTGATGGAGGAGGAACGCTGACATCCTCAGTAGAAGGCTCTGCTCCGGGGTCAGT
GGAAGATCTCCTGAGCCAGGATGAAAACACACTCATGGCCCATCAGCACAGTAACTCCATGGACAACCTGGACAGTGAGTGCAGCGAGGTCTACCAGCCCCTCACTTCCAGCGATGATGCTCTGGACG
CCCCTTCCTCTTCAGAGTCAGAGGGCGTCCCAAGCATTGAGCGCTCTCGGAAGGGGAGCAGTGGCAACGCCAGCGAGGTGTCCGTCGCTTGCCTGACAGAACGGATTCACCAGATGGAAGAGAACCAG
CACAGTACCAGTGAGGAGCTTCAGGCAACTCTGCAAGAGCTAGCGGATCTCCAGCAGATTACCCAGGAGCTCAACAGCGAGAACGAAAGGCTCGGAGAGGAGAAGGTCATTCTCATGGAGTCGCTGTG
TCAGCAGAGTGATAAGCTGGAACACTTTGGCCGACAGATTGAATATTTCCGTTCCCTTCTCGATGAGCATCACATTTCTTACGTCATAGATGAAGACGTAAAGAGCGGGCGCTACATGGAGCTAGAGC
AGCGCTACATGGACTTGGCTGAGAATGCCCGTTTTGAGCGAGAGCAGCTTCTAGGCGTTCAGCAGCATCTAAGCAACACTCTGAAGATGGCCGAACAAGATAACAAGGAAGCTCAAGAAATGATCGGT
GCCCTCAAAGAGCGCAGCCACCACATGGAGCGGATAATTGAGTCTGAGCAGAAGGGCAAGGCGGCCCTGGCAGCCACGTTGGAGGAGTACAAAGCTACTGTGGCCAGTGACCAGATAGAGATGAATCG
CTTGAAGGCCCAGCTGGAGAAGGAGAAGCAGAAGGTGGCTGAGCTGTACTCTATCCATAACTCTGGAGACAAGTCCGATATCCAGGACCTCCTGGAGAGCGTCAGGCTGGACAAGGAAAAGGCCGAGA
CTCTGGCCAGCAGCCTGCAGGAGGACCTGGCTCATACCCGCAATGACGCCAATCGCTTACAGGACACCATCGCTAAGGTAGAAGATGAGTACCGAGCTTTCCAGGAAGAAGCCAAGAAGCAGATTGAA
GATTTGAATATGACGTTAGAAAAGCTAAGATCAGAGCTGGAGGAAAAAGAAACAGAGCGGAGCGACATGAAGGAAACCATCTTTGAGCTTGAAGATGAGGTGGAGCAGCACCGGGCTGTGAAGCTGCA
CGACAACCTCATTATCTCTGACTTAGAGAATACAGTTAAAAAACTCCAAGACCAAAAGCATGACTTGGAAAGAGAAAACAAGACCCTTCACAGGAGACTTCGGGAAGAGTCCGCAGAATGGCGGCAGT
TTCAGGCTGATCTCCAGACTGCGGTGGTCATTGCAAATGACATCAAGTCTGAAGCCCAAGAGGAGATCGGTGATCTAAAGCGGCGGCTACATGAGGCCCAAGAGAAAAATGAGAAACTCACCAAAGAA
TTGGAGGAAATAAAGTCACGCAAGCAAGAGGAGGAGCGTGGCCGGGTGTATAACTACATGAATGCTGTTGAAAGAGATCTGGCAGCCTTGAGGCAAGGGATGGGACTGAGTAGAAGGTCCTCGACTTC
CTCAGAGCCAACTCCCACAGTAAAAACCCTCATCAAGTCTTTCGACAGTGCGTCTCAAGTACCAAATGCTGCTGCTGCTGCAATCCCTCGGACACCTCTGAGTCCAAGTCCCATGAAGACCCCCCCTG
CAGCTGCCGTTTCCCCCATGCAGAGACATTCTATAAGTGGGCCAGTCTCGACCTCCAAGCCTCTGACAGCCTTATCGGATAAGAGGTCAAACTATGGAGAAATTCCCGGACAAGAGCATCTACTAAGA
ACGTCTTCAACTAGCCGACCCGCCTCTCTCCCAAGAGTCCCTGCTATGGAAAGTGCTAAGACCATCTCAGTGTCTCGACGGAGTAGTGAAGAAATGAAGCGGGACATATCTGCATCTGAGGGGGCATC
ACCAGCCTCTCTCATGGCTATGGGCACCACATCCCCACAGCTCTCCCTGTCTTCCTCTCCCACCGCATCAGTCACTCCAAGCACCCGGAGCCGAATAAGGGAAGAAAGGAAAGACCCCCTCTCAGCAT
TGGCGAGAGAATACGGAGGATCTAAGAGGAATGCCTTGTTGAAGTGGTGTCAGAAGAAAACAGAAGGCTATCAGAATATCGACATCACAAACTTCAGCAGCAGCTGGAACGATGGGCTGGCTTTCTGC
GCACTTCTTCACACCTATCTCCCAGCCCACATACCATATCAAGAGCTGAACAGCCAAGAGAAGAAAAGGAACTTCACCTTGGCTTTCCAGGCAGCTGAAAGTGTTGGAATCAAATCCACTCTGGACAT
CAATGAAATGGCACGCACTGAACGGCCGGACTGGCAGAACGTAATGCTGTATGTCACAGCCATCTACAAGTACTTTGAAACCTGAGCACACCGGATGGCTGCTACCAGCTAGGGACCTCTGCAGTCAC
CAAGTGACAACACCATTAGCTAGAACCCCTAAAGCTTTCAGCGACTCTGGGCCTCCCTGCAGGGAGTGTGCCCAGCTCTAGGCCTCTGCATTGGAACTGGAACTGCAGACCAGGGCTCTTCGACGTGG
CTGTCCTCGGGATCAGAACACAGCACACCGCCGGCCTTCTTCCAGAGACCGTCTAGCTCTAACTAGCCCTGGAGTGTAAAAACACAAAGGCTTGTGCCTGGCTCATCCTGGGAAATGGGATTAAGTTG
TGGGAGCCACGGGTCAGTGAAAGCTAAAGCTATCGAACTTCTTGACTGTCATCCGTGGGATTCCCAGTGCTGGGACAGAGCTGGCCTTGGTCCCTTCATGTGGGCCTGGGTTCTAGGAGTGAATCAGA
GAAGAGGGTCAGTACCCCTTCCGTGCGAGGACCGTCCTAACCACTGCGGTAACTTAGCAGTGTTAAAGGCCAGCGCAGAGGCCCACAGCCAGTTGAGTCTACACGGCCACCAAGCAGATTTTTGTCAG
TCTCAAGAAGCAGGTGGCACACCCAGTAGGTGCTCAGCCTCTAGCCTGTAGCACCAAGGAAAAGACTGGTCACACGGAGTCTCTCATTAAAGTTGTTGTTTTATTATAAGCAATATTGGTGAAATAGC
TCCTATTCTGTTAGTACCAAAGTTAATTGCTTTAGTAAGCATAGAAATAAAAACATAATGTGGCCAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256339 ⟹ XP_006256401

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,337,399 - 13,442,788 (-)	NCBI
mRatBN7.2	20	13,337,983 - 13,443,382 (-)	NCBI
Rnor_6.0	20	14,287,470 - 14,393,576 (-)	NCBI
Rnor_5.0	20	16,470,744 - 16,577,173 (-)	NCBI

Sequence:

show sequence

CCATTCCGCGCCTGCGCCGTCTCCTGTCCCGGCGGACCTCACAGCTTGCCCCGCAGACCCCCCGGGCACCCAGGCTGTGGTGCTACCCGGCTAGCTCGGGGTCTCATCCCTGCGGAGAGGCTGGGTTT
GGTTGTAAATGCATCACCAAGAGGCAGCCCAGAATGAAGAAAGCAAACAGGAGTGCTGGCTCAGTGCCTAAGGTGTCTGGGATAAGCAAACCACAAACGGTAGAAAAAAGCAAGTCTGAAAACAGCTC
TTCAGCACCCACAGGAGGCAAACCTGTAAAGCCTGGGGCAGCAGCGGCCTTGTCAAAGACCAAGAGCAATGATGACCTTTTAGCTGGAATGGCTGGAGGAGTGAACGTGACTAATGGTGTTAAAGCCA
AGAAAAGCAACTGTTCATCTGCAGCGCCTTCAGCCCCTGCCCCTGCCATGACCATCTCGGAGAGCAAGTCCAAGAGTAGCACAGGCACTAGTTCCTCAGCCAAACGGAGTACTTCGGCTGGTAATAAA
GAGTCCAGTTCTACTAGAGAAAGATTACGTGAACGCACCCGGCTAAACCAGAGCAAAAAACTGCCCTCCGTAAGTCAGGGAGCTAACGATGTGGCACTGGCTAAGCGCTCACGCAGCCGCACTGCTAC
AGAGGGTGATATTCGCATGAGCAAGTCTAAGTCGGACAATCAGATCAGTGACAAAGCTGCTTTGGAAGCCAAGGTGAAAGATCTCCTCACACTGGCGAAAACCAAGGATGTGGAAATTTTACATTTGA
GAAATGAACTCCGAGACATGCGTGCTCAGCTGGGCATTAGTGAGGACCATTGTGAAGGTGAGGACAGGTCTGAGGAGAAGGAAACCATTATTGCCCACCAGCCAACTGATGTGGAGTCTACCCTCCTG
CAGCTGCAGGAACAGAATACAGCCATCCGCGAGGAGCTCAACCAGCTCAAGAATGAAAACAGAATGCTAAAGGACAGGCTGAATGCTTTGGGCTTTTCCCTAGAGCAAAGGCTGGACAATTCTGAAAA
ACTGTTTGGCTATCAGTCCCTGAGCCCAGAAATCACCCCTGGTAACCAGAGTGATGGAGGAGGAACGCTGACATCCTCAGTAGAAGGCTCTGCTCCGGGGTCAGTGGAAGATCTCCTGAGCCAGGATG
AAAACACACTCATGGCCCATCAGCACAGTAACTCCATGGACAACCTGGACAGTGAGTGCAGCGAGGTCTACCAGCCCCTCACTTCCAGCGATGATGCTCTGGACGCCCCTTCCTCTTCAGAGTCAGAG
GGCGTCCCAAGCATTGAGCGCTCTCGGAAGGGGAGCAGTGGCAACGCCAGCGAGGTGTCCGTCGCTTGCCTGACAGAACGGATTCACCAGATGGAAGAGAACCAGCACAGTACCAGTGAGGAGCTTCA
GGCAACTCTGCAAGAGCTAGCGGATCTCCAGCAGATTACCCAGGAGCTCAACAGCGAGAACGAAAGGCTCGGAGAGGAGAAGGTCATTCTCATGGAGTCGCTGTGTCAGCAGAGTGATAAGCTGGAAC
ACTTTGGCCGACAGATTGAATATTTCCGTTCCCTTCTCGATGAGCATCACATTTCTTACGTCATAGATGAAGACGTAAAGAGCGGGCGCTACATGGAGCTAGAGCAGCGCTACATGGACTTGGCTGAG
AATGCCCGTTTTGAGCGAGAGCAGCTTCTAGGCGTTCAGCAGCATCTAAGCAACACTCTGAAGATGGCCGAACAAGATAACAAGGAAGCTCAAGAAATGATCGGTGCCCTCAAAGAGCGCAGCCACCA
CATGGAGCGGATAATTGAGTCTGAGCAGAAGGGCAAGGCGGCCCTGGCAGCCACGTTGGAGGAGTACAAAGCTACTGTGGCCAGTGACCAGATAGAGATGAATCGCTTGAAGGCCCAGCTGGAGAAGG
AGAAGCAGAAGGTGGCTGAGCTGTACTCTATCCATAACTCTGGAGACAAGTCCGATATCCAGGACCTCCTGGAGAGCGTCAGGCTGGACAAGGAAAAGGCCGAGACTCTGGCCAGCAGCCTGCAGGAG
GACCTGGCTCATACCCGCAATGACGCCAATCGCTTACAGGACACCATCGCTAAGGTAGAAGATGAGTACCGAGCTTTCCAGGAAGAAGCCAAGAAGCAGATTGAAGATTTGAATATGACGTTAGAAAA
GCTAAGATCAGAGCTGGAGGAAAAAGAAACAGAGCGGAGCGACATGAAGGAAACCATCTTTGAGCTTGAAGATGAGGTGGAGCAGCACCGGGCTGTGAAGCTGCACGACAACCTCATTATCTCTGACT
TAGAGAATACAGTTAAAAAACTCCAAGACCAAAAGCATGACTTGGAAAGAGAAAACAAGACCCTTCACAGGAGACTTCGGGAAGAGTCCGCAGAATGGCGGCAGTTTCAGGCTGATCTCCAGACTGCG
GTGGTCATTGCAAATGACATCAAGTCTGAAGCCCAAGAGGAGATCGGTGATCTAAAGCGGCGGCTACATGAGGCCCAAGAGAAAAATGAGAAACTCACCAAAGAATTGGAGGAAATAAAGTCACGCAA
GCAAGAGGAGGAGCGTGGCCGGGTGTATAACTACATGAATGCTGTTGAAAGAGATCTGGCAGCCTTGAGGCAAGGGATGGGACTGAGTAGAAGGTCCTCGACTTCCTCAGAGCCAACTCCCACAGTAA
AAACCCTCATCAAGTCTTTCGACAGTGCGTCTCAAGTACCAAATGCTGCTGCTGCTGCAATCCCTCGGACACCTCTGAGTCCAAGTCCCATGAAGACCCCCCCTGCAGCTGCCGTTTCCCCCATGCAG
AGACATTCTATAAGTGGGCCAGTCTCGACCTCCAAGCCTCTGACAGCCTTATCGGATAAGAGGTCAAACTATGGAGAAATTCCCGGACAAGAGCATCTACTAAGAACGTCTTCAACTAGCCGACCCGC
CTCTCTCCCAAGAGTCCCTGCTATGGAAAGTGCTAAGACCATCTCAGTGTCTCGACGGAGTAGTGAAGAAATGAAGCGGGACATATCTGCATCTGAGGGGGCATCACCAGCCTCTCTCATGGCTATGG
GCACCACATCCCCACAGCTCTCCCTGTCTTCCTCTCCCACCGCATCAGTCACTCCAAGCACCCGGAGCCGAATAAGGGAAGAAAGGAAAGACCCCCTCTCAGCATTGGCGAGAGAATACGGAGGATCT
AAGAGGAATGCCTTGTTGAAGTGGTGTCAGAAGAAAACAGAAGGCTATCAGAATATCGACATCACAAACTTCAGCAGCAGCTGGAACGATGGGCTGGCTTTCTGCGCACTTCTTCACACCTATCTCCC
AGCCCACATACCATATCAAGAGCTGAACAGCCAAGAGAAGAAAAGGAACTTCACCTTGGCTTTCCAGGCAGCTGAAAGTGTTGGAATCAAATCCACTCTGGACATCAATGAAATGGCACGCACTGAAC
GGCCGGACTGGCAGAACGTAATGCTGTATGTCACAGCCATCTACAAGTACTTTGAAACCTGAGCACACCGGATGGCTGCTACCAGCTAGGGACCTCTGCAGTCACCAAGTGACAACACCATTAGCTAG
AACCCCTAAAGCTTTCAGCGACTCTGGGCCTCCCTGCAGGGAGTGTGCCCAGCTCTAGGCCTCTGCATTGGAACTGGAACTGCAGACCAGGGCTCTTCGACGTGGCTGTCCTCGGGATCAGAACACAG
CACACCGCCGGCCTTCTTCCAGAGACCGTCTAGCTCTAACTAGCCCTGGAGTGTAAAAACACAAAGGCTTGTGCCTGGCTCATCCTGGGAAATGGGATTAAGTTGTGGGAGCCACGGGTCAGTGAAAG
CTAAAGCTATCGAACTTCTTGACTGTCATCCGTGGGATTCCCAGTGCTGGGACAGAGCTGGCCTTGGTCCCTTCATGTGGGCCTGGGTTCTAGGAGTGAATCAGAGAAGAGGGTCAGTACCCCTTCCG
TGCGAGGACCGTCCTAACCACTGCGGTAACTTAGCAGTGTTAAAGGCCAGCGCAGAGGCCCACAGCCAGTTGAGTCTACACGGCCACCAAGCAGATTTTTGTCAGTCTCAAGAAGCAGGTGGCACACC
CAGTAGGTGCTCAGCCTCTAGCCTGTAGCACCAAGGAAAAGACTGGTCACACGGAGTCTCTCATTAAAGTTGTTGTTTTATTATAAGCAATATTGGTGAAATAGCTCCTATTCTGTTAGTACCAAAGT
TAATTGCTTTAGTAAGCATAGAAATAAAAACATAATGTGGGCATTAGCATGGTGAGAGTGAGGATTCGTGCAGTAGGGACAAGAGGACGTGCTTTAGGGGGCCAGAGACTCAAGTCACACTGATAGCT
GCCCCAGGGCAGGAGTTCAGACAGTGCCTTAGCCCTGCACCAGGACAGCTGAGCCTACACCTGCATGGGTGTCCTGCATGTTGATGGGGACTCTAGGAGAGGTGGCTCCATGCTGTGCCTGGGCTATG
GGGCCCACACCATGAGCCAAGGCCTTAACTCGGTTCTGTTGATTTCTGCCTGGAATTGAGCAGCCCCTTTTCAAGAATAGGAAGCCCTTATTTCATGTGCCTGACAACAGAAGCCATTGTTTGGACAA
TGTCAAGACCTGTTGCTTCTGGGATACACTTGTTTGTCACCTGCAAACACCATGCAGAGAATGGCCATCAATAGAAATGGGTTCACAGCCTCAATAGCAGGATGGTGGGAATGTCTCCCAGGAGGCAC
GCCAGTCCAAACCTGGACTGAGTGGGGTTCTGTATTCAAACATGCTCCAGACTGGGAATTTGTCGTATCTGTGGAACGTAGAGAAGGAAGCATTTTGAAAGTACTTATTAGGAAGTGGGCTGCGTCTG
TATGTGTTGCCATCAGATGGTCAGTCCCACCCTGCTTACATGTCCAAATCTGGCAGCTCATGCTGCAGAGTATTCCAGAAGACCCCTGTTAATCCACCTGTCCCGGTGCCTCTCTGGTCCTCCTTGGC
CTAACTCTGTTCTTGCTCTTGTTCTGCTGATGAGTTCCTGTCAGGGCCACTGACTGTCCAAGTGAGTCTCCACTGCATTCCTGAGCTTCCAGCCTCTGCTATATCTGCCTTCACTGAGGCCCATCCAC
TGTGCACCGAGGTATTTGATCTGAGGCCAGGTTTTATTTATTATCATGAAAAAGGGTTGTCTTGTTAAAGAGACTTTCCTGGGCTTGCAGTTCACAACTTCTGTTCCTCATGCCAACATAGAAATTAC
CAGAGTTTTCTGAAAAGAGTTGGAGTCAGTCTGCTGCTGCTGTATCTTCATATATAGATAACATTCTGCAAGGCCTGGGACCAGAGGAAACATTTCTATTCTGCAAGGCCTGGGGCCAGAGGCAGGGC
CTGATGATGGGCCGGAGGAGACTCTCGCCCCCCACCACACACACACTTGGTGCCCATCACAGCCAGGGTCAGGCTGCCCATGTTTGTGTGAGGGTCCACAAGTGTCCAGCTGTCTCCAGACCGTTGCT
TTTTGTCTCCTCCAATAGCCCCTTAAAGAGCACTGTTGGGCATGCTCGGAGACAGCCATGTGCTATTAAAAGTAGTACTTGGGAGTTGTTAGAATGACTGTCTCCAGTGCATGCACGAGGCCCTTGGT
TGACCCCCACGACCACATACACTGAGTGTGATGCATACCTGTAATTCTAGTACTTGGGAAACGGAGGCAGGAGGGTCATGAGTTCAGTGTTACTGTTGGTACACGGTGTGTTTGATGCCAGCCCTGGC
ATGTGAGAGACCCTGTCCCCTAAGAAGGTGATACTTGGAGGTTCTCTCATTCTAGGGCTGCTTCCTGGGAAGCTCCAAGATGTAAGCTCGCCTCTCTTTCCTAAAGCACAAGCTTCACTACAAAAGGG
CCAGTTACCTTTCTACTGTTGTCAGTCATGGCTTCTGCTGATGAATGATACTTTGTCGTTTTGTTCTAGTAAATACTCTTGAATGTA

hide sequence

RefSeq Acc Id:

XM_063279246 ⟹ XP_063135316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,337,399 - 13,443,080 (-)	NCBI

RefSeq Acc Id:

XM_063279247 ⟹ XP_063135317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,337,399 - 13,442,790 (-)	NCBI


Protein RefSeqs	NP_001034544	(Get FASTA)	NCBI Sequence Viewer
	XP_006256401	(Get FASTA)	NCBI Sequence Viewer
	XP_063135316	(Get FASTA)	NCBI Sequence Viewer
	XP_063135317	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAX84187	(Get FASTA)	NCBI Sequence Viewer
	EDL97232	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001764
	ENSRNOP00000001764.4
GenBank Protein	Q2KN99	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001034544 ⟸ NM_001039455

- UniProtKB:

Q2KN99 (UniProtKB/Swiss-Prot), A6JKL5 (UniProtKB/TrEMBL), A0A8I5ZSC5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKKANRSAGSVPKVSGISKPQTVEKSKSENSSSAPTGGKPVKPGAAAALSKTKSNDDLLAGMAGGVNVTNGVKAKKSNCSSAAPSAPAPAMTISESKSKSSTGTSSSAKRSTSAGNKESSSTRERLRE
RTRLNQSKKLPSVSQGANDVALAKRSRSRTATEGDIRMSKSKSDNQISDKAALEAKVKDLLTLAKTKDVEILHLRNELRDMRAQLGISEDHCEGEDRSEEKETIIAHQPTDVESTLLQLQEQNTAIRE
ELNQLKNENRMLKDRLNALGFSLEQRLDNSEKLFGYQSLSPEITPGNQSDGGGTLTSSVEGSAPGSVEDLLSQDENTLMAHQHSNSMDNLDSECSEVYQPLTSSDDALDAPSSSESEGVPSIERSRKG
SSGNASEVSVACLTERIHQMEENQHSTSEELQATLQELADLQQITQELNSENERLGEEKVILMESLCQQSDKLEHFGRQIEYFRSLLDEHHISYVIDEDVKSGRYMELEQRYMDLAENARFEREQLLG
VQQHLSNTLKMAEQDNKEAQEMIGALKERSHHMERIIESEQKGKAALAATLEEYKATVASDQIEMNRLKAQLEKEKQKVAELYSIHNSGDKSDIQDLLESVRLDKEKAETLASSLQEDLAHTRNDANR
LQDTIAKVEDEYRAFQEEAKKQIEDLNMTLEKLRSELEEKETERSDMKETIFELEDEVEQHRAVKLHDNLIISDLENTVKKLQDQKHDLERENKTLHRRLREESAEWRQFQADLQTAVVIANDIKSEA
QEEIGDLKRRLHEAQEKNEKLTKELEEIKSRKQEEERGRVYNYMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNAAAAAIPRTPLSPSPMKTPPAAAVSPMQRHSISGPVSTS
KPLTALSDKRSNYGEIPGQEHLLRTSSTSRPASLPRVPAMESAKTISVSRRSSEEMKRDISASEGASPASLMAMGTTSPQLSLSSSPTASVTPSTRSRIREERKDPLSALAREYGGSKRNALLKWCQK
KTEGYQNIDITNFSSSWNDGLAFCALLHTYLPAHIPYQELNSQEKKRNFTLAFQAAESVGIKSTLDINEMARTERPDWQNVMLYVTAIYKYFET

hide sequence

RefSeq Acc Id:	XP_006256401 ⟸ XM_006256339
- Peptide Label:	isoform X2
- UniProtKB:	Q2KN99 (UniProtKB/Swiss-Prot), A6JKL5 (UniProtKB/TrEMBL), A0A8I5ZSC5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKKANRSAGSVPKVSGISKPQTVEKSKSENSSSAPTGGKPVKPGAAAALSKTKSNDDLLAGMAGGVNVTNGVKAKKSNCSSAAPSAPAPAMTISESKSKSSTGTSSSAKRSTSAGNKESSSTRERLRE RTRLNQSKKLPSVSQGANDVALAKRSRSRTATEGDIRMSKSKSDNQISDKAALEAKVKDLLTLAKTKDVEILHLRNELRDMRAQLGISEDHCEGEDRSEEKETIIAHQPTDVESTLLQLQEQNTAIRE ELNQLKNENRMLKDRLNALGFSLEQRLDNSEKLFGYQSLSPEITPGNQSDGGGTLTSSVEGSAPGSVEDLLSQDENTLMAHQHSNSMDNLDSECSEVYQPLTSSDDALDAPSSSESEGVPSIERSRKG SSGNASEVSVACLTERIHQMEENQHSTSEELQATLQELADLQQITQELNSENERLGEEKVILMESLCQQSDKLEHFGRQIEYFRSLLDEHHISYVIDEDVKSGRYMELEQRYMDLAENARFEREQLLG VQQHLSNTLKMAEQDNKEAQEMIGALKERSHHMERIIESEQKGKAALAATLEEYKATVASDQIEMNRLKAQLEKEKQKVAELYSIHNSGDKSDIQDLLESVRLDKEKAETLASSLQEDLAHTRNDANR LQDTIAKVEDEYRAFQEEAKKQIEDLNMTLEKLRSELEEKETERSDMKETIFELEDEVEQHRAVKLHDNLIISDLENTVKKLQDQKHDLERENKTLHRRLREESAEWRQFQADLQTAVVIANDIKSEA QEEIGDLKRRLHEAQEKNEKLTKELEEIKSRKQEEERGRVYNYMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNAAAAAIPRTPLSPSPMKTPPAAAVSPMQRHSISGPVSTS KPLTALSDKRSNYGEIPGQEHLLRTSSTSRPASLPRVPAMESAKTISVSRRSSEEMKRDISASEGASPASLMAMGTTSPQLSLSSSPTASVTPSTRSRIREERKDPLSALAREYGGSKRNALLKWCQK KTEGYQNIDITNFSSSWNDGLAFCALLHTYLPAHIPYQELNSQEKKRNFTLAFQAAESVGIKSTLDINEMARTERPDWQNVMLYVTAIYKYFET hide sequence

Ensembl Acc Id:

ENSRNOP00000001764 ⟸ ENSRNOT00000001764

Ensembl Acc Id:

ENSRNOP00000081153 ⟸ ENSRNOT00000103283

RefSeq Acc Id:	XP_063135316 ⟸ XM_063279246
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZSC5 (UniProtKB/TrEMBL)

Protein Domains

Calponin-homology (CH)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2KN99-F1-model_v2	AlphaFold	Q2KN99	1-1118	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13701544

Promoter ID:

EPDNEW_R12068

Type:

initiation region

Name:

Specc1l_1

Description:

sperm antigen with calponin homology and coiled-coil domains1-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	14,393,804 - 14,393,864	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-4107	BioCyc
Ensembl Genes	ENSRNOG00000001303	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000001764	ENTREZGENE
	ENSRNOT00000001764.6	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.418.10	UniProtKB/Swiss-Prot
InterPro	CH-domain	UniProtKB/Swiss-Prot
	CH_dom_sf	UniProtKB/Swiss-Prot
	F-actin_Monoox_Mical	UniProtKB/Swiss-Prot
KEGG Report	rno:361828	UniProtKB/Swiss-Prot
NCBI Gene	361828	ENTREZGENE
PANTHER	CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED	UniProtKB/Swiss-Prot
	PTHR23167:SF18	UniProtKB/Swiss-Prot
Pfam	PF00307	UniProtKB/Swiss-Prot
PhenoGen	Specc1l	PhenoGen
PROSITE	PS50021	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000001303	RatGTEx
SMART	SM00033	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47576	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZSC5	ENTREZGENE, UniProtKB/TrEMBL
	A6JKL5	ENTREZGENE, UniProtKB/TrEMBL
	CYTSA_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Specc1l	sperm antigen with calponin homology and coiled-coil domains 1-like	LOC102546441	28S ribosomal protein S7, mitochondrial-like	Data merged from RGD:7738849	737654	PROVISIONAL
2013-12-18	LOC102546441	28S ribosomal protein S7, mitochondrial-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2011-08-02	Specc1l	sperm antigen with calponin homology and coiled-coil domains 1-like	Cytsa	cytospin A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-05	Cytsa	cytospin A	Specc1l	SPECC1-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-26	Specc1l	SPECC1-like	RGD1309570	similar to mKIAA0376 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1309570	similar to mKIAA0376 protein	RGD1309570_predicted	similar to mKIAA0376 protein (predicted)	Symbol and Name status set to approved	1299863	APPROVED
2005-01-20	RGD1309570_predicted	similar to mKIAA0376 protein (predicted)	LOC361828_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361828_predicted	similar to mKIAA0376 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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