Tspan15 (tetraspanin 15) - Rat Genome Database

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Gene: Tspan15 (tetraspanin 15) Rattus norvegicus
Analyze
Symbol: Tspan15
Name: tetraspanin 15
RGD ID: 1588304
Description: Predicted to enable enzyme binding activity. Predicted to be involved in several processes, including negative regulation of Notch signaling pathway; protein localization to plasma membrane; and regulation of membrane protein ectodomain proteolysis. Predicted to be located in several cellular components, including cell surface; nuclear body; and tetraspanin-enriched microdomain. Predicted to be active in plasma membrane. Orthologous to human TSPAN15 (tetraspanin 15); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC679462; LOC679462; similar to Tetraspanin-15 (Tspan-15) (Transmembrane 4 superfamily member 15) (Tetraspan NET-7); tetraspanin-15; uncharacterized protein LOC679462
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82030,673,271 - 30,717,651 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2030,673,272 - 30,717,651 (-)EnsemblGRCr8
mRatBN7.22030,130,528 - 30,174,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,130,530 - 30,174,930 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2031,141,470 - 31,185,856 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02030,532,371 - 30,576,751 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02031,275,155 - 31,319,408 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02031,812,558 - 31,857,191 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,813,192 - 31,857,097 (-)Ensemblrn6Rnor6.0
Rnor_5.02033,606,531 - 33,648,168 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera2031,553,858 - 31,597,270 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
2,3,4,5-tetrachlorophenol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
Aroclor 1254  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
carnosic acid  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dibutyl phthalate  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
fluoranthene  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glycidol  (EXP)
ketoconazole  (ISO)
Lasiocarpine  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel sulfate  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
rotenone  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
triadimefon  (EXP)
tributylstannane  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell junction  (IEA,ISO)
cell surface  (IEA,ISO)
cytosol  (IEA,ISO)
endosome  (IEA)
late endosome membrane  (IEA)
membrane  (IEA)
nuclear body  (IEA,ISO)
plasma membrane  (IBA,IEA,ISO)
tetraspanin-enriched microdomain  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:23035126   PMID:23091066   PMID:23376485   PMID:30463011  


Genomics

Comparative Map Data
Tspan15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82030,673,271 - 30,717,651 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2030,673,272 - 30,717,651 (-)EnsemblGRCr8
mRatBN7.22030,130,528 - 30,174,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,130,530 - 30,174,930 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2031,141,470 - 31,185,856 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02030,532,371 - 30,576,751 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02031,275,155 - 31,319,408 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02031,812,558 - 31,857,191 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,813,192 - 31,857,097 (-)Ensemblrn6Rnor6.0
Rnor_5.02033,606,531 - 33,648,168 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera2031,553,858 - 31,597,270 (-)NCBICelera
Cytogenetic Map20q11NCBI
TSPAN15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381069,451,465 - 69,549,508 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1069,451,465 - 69,507,666 (+)Ensemblhg38GRCh38
GRCh371071,211,221 - 71,267,422 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361070,881,232 - 70,937,429 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341070,881,231 - 70,937,429NCBI
Celera1064,487,632 - 64,543,834 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1065,211,006 - 65,267,237 (+)NCBIHuRef
CHM1_11071,492,976 - 71,549,176 (+)NCBICHM1_1
T2T-CHM13v2.01070,319,512 - 70,417,621 (+)NCBIT2T-CHM13v2.0
Tspan15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,021,175 - 62,067,055 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,021,175 - 62,067,030 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381062,185,396 - 62,231,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,185,396 - 62,231,251 (-)Ensemblmm10GRCm38
MGSCv371061,648,144 - 61,693,966 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361061,582,724 - 61,626,524 (-)NCBIMGSCv36mm8
Celera1063,288,374 - 63,334,469 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.36NCBI
Tspan15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543721,641,377 - 21,688,007 (-)Ensembl
ChiLan1.0NW_00495543721,643,018 - 21,687,355 (-)NCBIChiLan1.0ChiLan1.0
TSPAN15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2881,599,118 - 81,661,203 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11081,604,436 - 81,666,524 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01065,919,622 - 65,976,449 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11068,450,315 - 68,507,151 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1068,450,318 - 68,507,151 (+)EnsemblpanPan2panpan1.1
TSPAN15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,556,981 - 20,607,934 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl420,556,689 - 20,607,265 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha420,686,618 - 20,737,576 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0420,828,793 - 20,879,019 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl420,828,774 - 20,887,623 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1420,728,955 - 20,779,317 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0420,932,964 - 20,983,340 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0421,276,326 - 21,327,286 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tspan15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721360,488,966 - 60,529,616 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365218,979,541 - 9,022,387 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365218,981,691 - 9,022,336 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1472,468,914 - 72,555,080 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11472,501,289 - 72,555,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TSPAN15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1961,813,896 - 61,869,057 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl961,813,686 - 61,868,987 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604822,553,290 - 22,608,436 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247543,703,108 - 3,750,576 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247543,703,087 - 3,779,789 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Tspan15
362 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:85
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000075714
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat

Markers in Region
RH130432  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22030,130,566 - 30,130,753 (+)MAPPERmRatBN7.2
Rnor_6.02031,812,597 - 31,812,783NCBIRnor6.0
Rnor_5.02033,606,570 - 33,606,756UniSTSRnor5.0
Celera2031,553,897 - 31,554,083UniSTS
AU048028  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera2031,587,080 - 31,587,279UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 81 59 6 345 181 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000075714   ⟹   ENSRNOP00000065267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2030,673,272 - 30,717,651 (-)Ensembl
mRatBN7.2 Ensembl2030,130,530 - 30,174,930 (-)Ensembl
Rnor_6.0 Ensembl2031,813,192 - 31,857,097 (-)Ensembl
RefSeq Acc Id: NM_001115032   ⟹   NP_001108504
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82030,673,271 - 30,717,651 (-)NCBI
mRatBN7.22030,130,528 - 30,174,912 (-)NCBI
Rnor_6.02031,812,558 - 31,857,191 (-)NCBI
Rnor_5.02033,606,531 - 33,648,168 (-)NCBI
Celera2031,553,858 - 31,597,270 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001108504 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58655 (Get FASTA)   NCBI Sequence Viewer  
  EDL92992 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000065267
  ENSRNOP00000065267.3
RefSeq Acc Id: NP_001108504   ⟸   NM_001115032
- UniProtKB: B0BN23 (UniProtKB/TrEMBL),   M0R749 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000065267   ⟸   ENSRNOT00000075714

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R749-F1-model_v2 AlphaFold M0R749 1-293 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588304 AgrOrtholog
BioCyc Gene G2FUF-3699 BioCyc
Ensembl Genes ENSRNOG00000046204 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075714 ENTREZGENE
  ENSRNOT00000075714.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8368493 IMAGE-MGC_LOAD
InterPro Tetraspanin UniProtKB/TrEMBL
  Tetraspanin_EC2 UniProtKB/TrEMBL
  Tetraspanin_sub UniProtKB/TrEMBL
KEGG Report rno:679462 UniProtKB/TrEMBL
MGC_CLONE MGC:187638 IMAGE-MGC_LOAD
NCBI Gene 679462 ENTREZGENE
PANTHER PTHR19282 UniProtKB/TrEMBL
  TETRASPANIN-15 UniProtKB/TrEMBL
Pfam Tetraspannin UniProtKB/TrEMBL
PhenoGen Tspan15 PhenoGen
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046204 RatGTEx
Superfamily-SCOP Tetraspanin UniProtKB/TrEMBL
UniProt B0BN23 ENTREZGENE, UniProtKB/TrEMBL
  M0R749 ENTREZGENE
UniProt Secondary M0R749 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-09 Tspan15  tetraspanin 15  LOC679462  similar to Tetraspanin-15 (Tspan-15) (Transmembrane 4 superfamily member 15) (Tetraspan NET-7)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC679462  similar to Tetraspanin-15 (Tspan-15) (Transmembrane 4 superfamily member 15) (Tetraspan NET-7)      Symbol and Name status set to provisional 70820 PROVISIONAL