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Gene: Cmtr1 (cap methyltransferase 1) Rattus norvegicus
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Symbol: Cmtr1
Name: cap methyltransferase 1
Description: Predicted to have mRNA (nucleoside-2'-O-)-methyltransferase activity. Predicted to be involved in 7-methylguanosine mRNA capping and cap1 mRNA methylation. Predicted to localize to the cytosol and nucleoplasm. Orthologous to human CMTR1 (cap methyltransferase 1); INTERACTS WITH atrazine; bisphenol A; diuron.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1; cap1 2'O-ribose methyltransferase 1; FtsJ methyltransferase domain containing 2; ftsJ methyltransferase domain-containing protein 2; Ftsjd2; LOC309656; LRRG00129; MTr1; RGD1307801; S-adenosyl-L-methionine-dependent methyltransferase FTSJD2; similar to RIKEN cDNA 1300018I05
Orthologs:
Homo sapiens (human) : CMTR1 (cap methyltransferase 1)  HGNC  Alliance
Mus musculus (house mouse) : Cmtr1 (cap methyltransferase 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cmtr1 (cap methyltransferase 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CMTR1 (cap methyltransferase 1)
Canis lupus familiaris (dog) : CMTR1 (cap methyltransferase 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cmtr1 (cap methyltransferase 1)
Sus scrofa (pig) : CMTR1 (cap methyltransferase 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0208,324,968 - 8,385,174 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl208,312,792 - 8,368,764 (+)Ensembl
Rnor_5.02010,524,633 - 10,568,581 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,970,034 - 8,014,387 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1207,970,260 - 8,014,615 (+)NCBI
Celera209,260,397 - 9,304,373 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Cmtr1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1307801
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.