Rpl39-ps14 (ribosomal protein L39, pseudogene 14) - Rat Genome Database

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Gene: Rpl39-ps14 (ribosomal protein L39, pseudogene 14) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl39-ps14 (Ensembl: Rpl39-ps11)
Name: ribosomal protein L39, pseudogene 14 (Ensembl:ribosomal protein L39, pseudogene 11)
RGD ID: 9200697
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Orthologous to human RPL39 (ribosomal protein L39).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 60S ribosomal protein L39; LOC103694404
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Rpl39  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82017,253,039 - 17,253,393 (+)NCBIGRCr8
mRatBN7.22017,253,877 - 17,254,231 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX116,327,094 - 116,330,304 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1520,118,923 - 20,119,078 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl729,834,988 - 29,835,143 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2017,253,931 - 17,254,086 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2017,980,586 - 17,980,940 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02017,335,582 - 17,335,936 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02017,808,238 - 17,808,592 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02018,492,101 - 18,492,465 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2018,492,169 - 18,492,324 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX123,705,235 - 123,708,211 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1433,030,959 - 33,031,282 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,586,925 - 6,587,080 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl736,290,233 - 36,290,388 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX33,721,935 - 33,722,090 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1523,649,507 - 23,649,662 (-)EnsemblRnor6.0rn6Rnor6.0
Celera2018,653,274 - 18,653,585 (+)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000040815   ⟹   ENSRNOP00000045098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl186,586,925 - 6,587,080 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000043244   ⟹   ENSRNOP00000049713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,326,330 - 6,326,692 (-)Ensembl
Rnor_6.0 Ensembl1433,030,959 - 33,031,282 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000046536   ⟹   ENSRNOP00000049665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2017,253,931 - 17,254,086 (+)Ensembl
Rnor_6.0 Ensembl2018,492,169 - 18,492,324 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000050345   ⟹   ENSRNOP00000044553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,118,923 - 20,119,078 (-)Ensembl
Rnor_6.0 Ensembl1523,649,507 - 23,649,662 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000051137   ⟹   ENSRNOP00000041329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl729,834,988 - 29,835,143 (+)Ensembl
Rnor_6.0 Ensembl736,290,233 - 36,290,388 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000059010   ⟹   ENSRNOP00000055790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX33,721,935 - 33,722,090 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000064521   ⟹   ENSRNOP00000059662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX123,705,384 - 123,707,257 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX123,707,436 - 123,708,188 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX123,706,651 - 123,707,345 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092456   ⟹   ENSRNOP00000075910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX116,327,094 - 116,330,304 (-)Ensembl
Rnor_6.0 EnsemblX123,705,235 - 123,708,211 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX123,705,240 - 123,707,560 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX123,705,236 - 123,705,889 (-)Ensembl
RefSeq Acc Id: XM_008772938   ⟹   XP_008771160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22017,253,862 - 17,254,227 (+)NCBI
Rnor_6.02018,492,101 - 18,492,465 (+)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSRNOP00000075910.2
RefSeq Acc Id: XP_008771160   ⟸   XM_008772938
- Sequence:
Ensembl Acc Id: ENSRNOP00000049713   ⟸   ENSRNOT00000043244
Ensembl Acc Id: ENSRNOP00000075910   ⟸   ENSRNOT00000092456
Ensembl Acc Id: ENSRNOP00000041329   ⟸   ENSRNOT00000051137
Ensembl Acc Id: ENSRNOP00000049665   ⟸   ENSRNOT00000046536
Ensembl Acc Id: ENSRNOP00000045098   ⟸   ENSRNOT00000040815
Ensembl Acc Id: ENSRNOP00000044553   ⟸   ENSRNOT00000050345
Ensembl Acc Id: ENSRNOP00000055790   ⟸   ENSRNOT00000059010
Ensembl Acc Id: ENSRNOP00000059662   ⟸   ENSRNOT00000064521

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62893-F1-model_v2 AlphaFold P62893 1-51 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701559
Promoter ID:EPDNEW_R12075
Type:single initiation site
Name:LOC103692785_1
Description:60S ribosomal protein L39
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02018,492,115 - 18,492,175EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9200697 AgrOrtholog
BioCyc Gene G2FUF-4049 BioCyc
Ensembl Genes ENSRNOG00000029267 Ensembl
  ENSRNOG00000032835 Ensembl
  ENSRNOG00000034237 Ensembl
  ENSRNOG00000038654 Ensembl
  ENSRNOG00000043348 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000048073 Ensembl
  ENSRNOG00000050393 Ensembl
Ensembl Transcript ENSRNOT00000092456.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1620.10 UniProtKB/TrEMBL
InterPro Ribosomal_L39 UniProtKB/TrEMBL
  Ribosomal_L39_CS UniProtKB/TrEMBL
  Ribosomal_L39e_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC103694404 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L39 UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN L39E UniProtKB/TrEMBL
Pfam Ribosomal_L39 UniProtKB/TrEMBL
PhenoGen Rpl39-ps14 PhenoGen
PROSITE RIBOSOMAL_L39E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029267 RatGTEx
  ENSRNOG00000032835 RatGTEx
  ENSRNOG00000034237 RatGTEx
  ENSRNOG00000038654 RatGTEx
  ENSRNOG00000043348 RatGTEx
  ENSRNOG00000048073 RatGTEx
  ENSRNOG00000050393 RatGTEx
Superfamily-SCOP SSF48662 UniProtKB/TrEMBL
UniProt A0A8L2RBV8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl39-ps14  ribosomal protein L39, pseudogene 14  LOC103694404  60S ribosomal protein L39  Symbol and Name Changed 1299863 APPROVED
2014-08-25 LOC103694404  60S ribosomal protein L39      Symbol and Name status set to provisional 70820 PROVISIONAL