Hspa1l (heat shock protein family A (Hsp70) member 1 like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Hspa1l (heat shock protein family A (Hsp70) member 1 like) Rattus norvegicus
Analyze
Symbol: Hspa1l
Name: heat shock protein family A (Hsp70) member 1 like
RGD ID: 1595925
Description: Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Predicted to be involved in several processes, including chaperone cofactor-dependent protein refolding; positive regulation of protein targeting to mitochondrion; and protein refolding. Predicted to act upstream of or within binding activity of sperm to zona pellucida. Located in mitochondrial matrix. Human ortholog(s) of this gene implicated in Kawasaki disease; major depressive disorder; schizophrenia; systemic lupus erythematosus; and uveitis. Orthologous to human HSPA1L (heat shock protein family A (Hsp70) member 1 like); PARTICIPATES IN antigen processing and presentation pathway; endocytosis pathway; Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: heat shock 70 kDa protein 1-like; heat shock 70 kDa protein 1L; heat shock 70 kDa protein 3; heat shock 70kD protein 1-like; heat shock 70kD protein 1-like (mapped); heat shock protein 1-like; heat shock protein 70; Heat shock protein 70-1l; Hsp70-3; HSP70.3; Hspa1l_mapped; MGC112562; MGC114222
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Is Marker For: Strains:   SHR-Hspa1em1Mcwi  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,848,843 - 3,855,571 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl203,848,843 - 3,855,571 (-)Ensembl
Rnor_6.0204,879,998 - 4,965,191 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,959,294 - 4,964,963 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,032,557 - 7,038,454 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera204,171,282 - 4,177,670 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
amphibole asbestos  (ISO)
antirheumatic drug  (ISO)
apigenin  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
Aurin  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbonyl cyanide p-trifluoromethoxyphenylhydrazone  (ISO)
choline  (EXP)
clofibrate  (ISO)
cobalt atom  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
crocin-1  (EXP)
crotonaldehyde  (ISO)
D-penicillamine  (ISO)
decabromodiphenyl ether  (EXP)
deoxynivalenol  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethyl maleate  (ISO)
diethylstilbestrol  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
ferric ammonium citrate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
gemcitabine  (ISO)
gentamycin  (EXP)
hemin  (ISO)
indometacin  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
isoprenaline  (EXP,ISO)
ivermectin  (ISO)
L-methionine  (EXP)
L-serine  (ISO)
Licochalcone B  (ISO)
linalool  (EXP)
lithium atom  (EXP)
lithium hydride  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
monocrotaline  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
nitroprusside  (ISO)
omeprazole  (EXP)
organoselenium compound  (ISO)
oxidopamine  (EXP)
p-chloromercuribenzoic acid  (ISO)
paclitaxel  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
phenytoin  (ISO)
pioglitazone  (ISO)
pirinixic acid  (ISO)
quercitrin  (ISO)
rifampicin  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
styrene  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
teriflunomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thimerosal  (ISO)
thiostrepton  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
Tungsten carbide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc pyrithione  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:7927536   PMID:12477932   PMID:15060004   PMID:15489334   PMID:17182002   PMID:18850735   PMID:21231916   PMID:21880732   PMID:22516433   PMID:24270810   PMID:26316108   PMID:28259758  
PMID:29476059   PMID:31904090  


Genomics

Comparative Map Data
Hspa1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,848,843 - 3,855,571 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl203,848,843 - 3,855,571 (-)Ensembl
Rnor_6.0204,879,998 - 4,965,191 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,959,294 - 4,964,963 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,032,557 - 7,038,454 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera204,171,282 - 4,177,670 (+)NCBICelera
Cytogenetic Map20p12NCBI
HSPA1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,809,619 - 31,815,283 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl631,809,619 - 31,815,283 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,777,396 - 31,783,060 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,885,375 - 31,890,814 (-)NCBINCBI36hg18NCBI36
Build 34631,885,374 - 31,890,786NCBI
Celera633,375,646 - 33,381,084 (-)NCBI
Cytogenetic Map6p21.33NCBI
HuRef631,563,804 - 31,569,242 (-)NCBIHuRef
CHM1_1631,779,530 - 31,784,969 (-)NCBICHM1_1
T2T-CHM13v2.0631,662,676 - 31,668,340 (-)NCBI
Hspa1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,191,679 - 35,198,204 (+)NCBIGRCm39mm39
GRCm39 Ensembl1735,191,679 - 35,198,261 (+)Ensembl
GRCm381734,972,703 - 34,979,228 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,972,703 - 34,979,285 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,109,648 - 35,116,173 (+)NCBIGRCm37mm9NCBIm37
MGSCv361734,580,788 - 34,587,281 (+)NCBImm8
Celera1738,068,927 - 38,075,454 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.51NCBI
HSPA1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,357,626 - 32,370,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,358,054 - 32,359,979 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,470,745 - 31,483,615 (-)NCBIMhudiblu_PPA_v0panPan3
LOC474850
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,281,164 - 1,285,010 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,281,472 - 1,285,440 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,416,835 - 1,420,649 (-)NCBI
ROS_Cfam_1.0121,424,019 - 1,427,833 (-)NCBI
ROS_Cfam_1.0 Ensembl121,423,961 - 1,428,295 (-)Ensembl
UMICH_Zoey_3.1121,283,032 - 1,286,847 (-)NCBI
UNSW_CanFamBas_1.0121,350,176 - 1,353,991 (-)NCBI
UU_Cfam_GSD_1.0121,414,602 - 1,418,416 (-)NCBI
LOC101956412
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,816,113 - 35,825,083 (-)NCBI
SpeTri2.0NW_0049367271,735,880 - 1,745,231 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSPA1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,909,960 - 23,921,723 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,909,960 - 23,938,678 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103221744
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,206,365 - 40,211,996 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604431,724,065 - 31,729,529 (-)NCBIVero_WHO_p1.0
Hspa1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,416,738 - 24,424,613 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462475424,403,438 - 24,423,477 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
PMC117401P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map20p12UniSTS
PMC314357P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,871,310 - 3,871,800 (-)MAPPERmRatBN7.2
mRatBN7.2203,856,718 - 3,857,207 (-)MAPPERmRatBN7.2
Rnor_6.0204,878,745 - 4,879,233NCBIRnor6.0
Rnor_6.0202,700,781 - 2,701,269NCBIRnor6.0
Rnor_5.0204,803,650 - 4,804,138UniSTSRnor5.0
Rnor_5.0206,959,145 - 6,959,633UniSTSRnor5.0
RGSC_v3.4203,956,153 - 3,956,641UniSTSRGSC3.4
Celera204,155,481 - 4,155,969UniSTS
Celera204,169,646 - 4,170,134UniSTS
Cytogenetic Map20p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2036216564606812Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat


Related Rat Strains
The following Strains have been annotated to Hspa1l

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:190
Count of miRNA genes:150
Interacting mature miRNAs:160
Transcripts:ENSRNOT00000074223
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 1
Medium 1 6
Low 35 6 8 10 15 4 10 10 8
Below cutoff 3 8 28 18 17 18 59 30 24 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000074223   ⟹   ENSRNOP00000063974
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,848,843 - 3,855,571 (-)Ensembl
Rnor_6.0 Ensembl204,959,294 - 4,964,963 (+)Ensembl
RefSeq Acc Id: NM_212546   ⟹   NP_997711
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,848,843 - 3,855,571 (-)NCBI
Rnor_6.0204,959,294 - 4,965,191 (+)NCBI
Rnor_5.0207,032,557 - 7,038,454 (+)NCBI
Celera204,171,282 - 4,177,670 (+)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_997711   ⟸   NM_212546
- UniProtKB: P55063 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000063974   ⟸   ENSRNOT00000074223

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P55063-F1-model_v2 AlphaFold P55063 1-641 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701377
Promoter ID:EPDNEW_R11901
Type:multiple initiation site
Name:Hspa1l_1
Description:heat shock protein family A member 1 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,959,295 - 4,959,355EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
20 4893295 4893296 C A snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), SBN/Ygl (MCW), SBH/Ygl (MCW), FHL/EurMcwi (MCW)
20 4893301 4893302 G A snv SBH/Ygl (MCW), FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), SBN/Ygl (MCW)
20 4893313 4893314 T A snv SS/JrHsdMcwi (2019), LEXF2B/Stm (2019), F344/Stm (2019), F344/DuCrl (2019), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW)
20 4893332 4893333 C T snv SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), BXH2/CubMcwi (2020), SS/JrHsdMcwi (2019), F344/Stm (2019), LEXF2B/Stm (2019), SHRSP/A3NCrl (2019), F344/DuCrl (2019)
20 4893586 4893587 C A snv BXH2/CubMcwi (2020), GK/FarMcwi (2019), SHR/OlalpcvMcwi (2019), HXB31/IpcvMcwi (2019), SHRSP/A3NCrl (2019), HXB2/IpcvMcwi (2019)
20 4893608 4893609 A T snv PVG/Seac (2019), MR/N (2020)
20 4893812 4893813 C A snv GK/Ox (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), BXH2/CubMcwi (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), HXB31/IpcvMcwi (2019)
20 4893827 4893828 C A snv FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW)
20 4894109 4894110 T A snv CDS, CDR
20 4894122 4894123 G A snv DA/OlaHsd (2019), FHH/EurMcwi (2019), ACI/N (2020), ACI/EurMcwi (2019)
20 4894131 4894132 C G snv CDR, CDS
20 4894139 4894140 G T snv PVG/Seac (2019)
20 4894182 4894183 C T snv LEXF1C/Stm (2019), LEXF1A/Stm (2019), LEXF11/Stm (2020), FXLE18/Stm (2020), F344/Stm (2019), F344/N (2020), F344/DuCrl (2019), ACI/EurMcwi (2019), LEXF2B/Stm (2019), SS/JrHsdMcwi (2019), LL/MavRrrcAek (2020), LEXF3/Stm (2020)
20 4894192 4894193 G T snv ACI/N (2020), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), SS/JrHsdMcwi (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), SR/JrHsd (2020), LL/MavRrrcAek (2020), LEXF3/Stm (2020), LEXF11/Stm (2020)
20 4894209 4894210 C T snv SHRSP/A3NCrl (2019), M520/N (2020), M520/NRrrcMcwi (2019), LE/Stm (2019), LEXF4/Stm (2020), SHR/OlalpcvMcwi (2019), HXB2/IpcvMcwi (2019), FXLE16/Stm (2020), BXH2/CubMcwi (2020), BUF/N (2020), HXB31/IpcvMcwi (2019)
20 4894211 4894212 C T snv ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), LEW/Crl (2019), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), WAG/RijCrl (2020), WKY/NCrl (2019), GH/OmrMcwi (MCW), WN/N (2020), WKY/N (2020)
20 4894218 4894219 A C snv MR/N (2020)
20 4894230 4894231 G T snv SHR/OlalpcvMcwi (2019), SHRSP/A3NCrl (2019), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), HXB31/IpcvMcwi (2019), FXLE16/Stm (2020), BXH2/CubMcwi (2020), BUF/N (2020), HXB2/IpcvMcwi (2019)
20 4894232 4894233 G A snv FXLE16/Stm (2020), MWF/Hsd (2019), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020)
20 4894260 4894261 C G snv SBN/Ygl (MCW), SBH/Ygl (MCW)
20 4894289 4894290 G T snv WKY/NCrl (2019), LEW/Crl (2019), WN/N (2020), WKY/N (2020)
20 4894296 4894297 G A snv LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019)
20 4894304 4894305 G T snv FHH/EurMcwi (2019)
20 4894314 4894315 C T snv BUF/N (2020), BXH2/CubMcwi (2020), HXB2/IpcvMcwi (2019), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), BN/SsN (2020), LE/Stm (2019)
20 4896275 4896276 C T snv SR/JrHsd (MCW), F344/DuCrl (2019), F344/Stm (2019), LEXF3/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), FXLE18/Stm (2020)
20 4896308 4896309 G T snv F344/Stm (2019), LEXF3/Stm (2020), LEXF1C/Stm (2019), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/DuCrl (2019), LL/MavRrrcAek (2020), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019)
20 4896338 4896339 T C snv SS/JrHsdMcwi (2019), M520/NRrrcMcwi (2019), F344/DuCrl (2019)
20 4896368 4896369 C T snv MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), BUF/N (2020), DA/OlaHsd (2019), FXLE16/Stm (2020), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020)
20 4896395 4896396 C T snv HXB2/IpcvMcwi (2019), SS/JrHsdMcwi (2019), SR/JrHsd (2020), SHR/OlalpcvMcwi (2019), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), SHRSP/Gcrc (RGD), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), WAG/RijCrl (2020), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019)
20 4896397 4896398 C T snv WAG/RijCrl (2020), MWF/Hsd (2019)
20 4896398 4896399 G C snv CDS, CDR
20 4896400 4896401 G T snv GH/OmrMcwi (MCW), CDS, CDR, WN/N (2020), WKY/N (2020), WKY/NCrl (2019), LEW/Crl (2019)
20 4896419 4896420 C G snv LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WKY/NCrl (2019), WKY/N (2020), LE/Stm (2019), WN/N (2020), LEW/Crl (2019), DA/OlaHsd (2019), BUF/N (2020), CDS, CDR, LEXF4/Stm (2020)
20 4896458 4896459 C G snv SBH/Ygl (MCW), SBN/Ygl (MCW), BUF/N (2020), DA/OlaHsd (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), MWF/Hsd (2019), SHRSP/A3NCrl (2019), WKY/NCrl (2019), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW)
20 4896476 4896477 A G snv FXLE18/Stm (2020), F344/Stm (2019)
20 4896481 4896482 G A snv FXLE18/Stm (2020), F344/Stm (2019)
20 4896484 4896485 T A snv WKY/NCrl (2019), LE/Stm (2019), LEXF4/Stm (2020), LEW/Crl (2019), DA/OlaHsd (2019), MR/N (2020)
20 4896487 4896488 C T snv LE/Stm (2019), WKY/NCrl (2019), LEXF4/Stm (2020), LEW/Crl (2019), DA/OlaHsd (2019)
20 4896488 4896489 C G snv WN/N (2020), MR/N (2020), WKY/NCrl (2019), WAG/RijCrl (2020), PVG/Seac (2019), MWF/Hsd (2019), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), ACI/N (MCW), WKY/N (MCW), WN/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), WKY/N (2020)
20 4896490 4896491 A G snv LEXF4/Stm (2020), LEW/Crl (2019), LE/Stm (2019), WKY/NCrl (2019), DA/OlaHsd (2019)
20 4896494 4896495 C G snv CDR
20 4896494 4896495 C T snv DA/OlaHsd (2019), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), WKY/NCrl (2019)
20 4896505 4896506 A G snv BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), M520/N (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), LH/MavRrrcAek (2020)
20 4896506 4896507 C T snv SBH/Ygl (MCW), SBN/Ygl (MCW), DA/OlaHsd (2019), FXLE18/Stm (2020), LEW/Crl (2019), LEXF4/Stm (2020), LE/Stm (2019), WKY/NCrl (2019)
20 4896527 4896528 G C snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SBH/Ygl (MCW)
20 4896898 4896899 G A snv ACI/EurMcwi (MCW), SR/JrHsd (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SS/JrHsdMcwi (MCW), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FXLE16/Stm (2020), LEXF11/Stm (2020), LEXF2B/Stm (2019), LL/MavRrrcAek (2020), COP/CrCrl (MCW & UW)
20 4896901 4896902 T G snv M520/N (2020), BUF/N (2020)
20 4896909 4896910 G A snv SR/JrHsd (MCW), CDS, ACI/EurMcwi (MCW), CDR, SBH/Ygl (MCW), GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW)
20 4896915 4896916 A T snv FXLE16/Stm (2020), MWF/Hsd (2019)
20 4896936 4896937 A G snv BUF/N (2020)
20 4896937 4896938 G A snv DA/OlaHsd (2019), F344/DuCrl (2019), WKY/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), BXH2/CubMcwi (2020), BUF/N (2020), ACI/EurMcwi (2019), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), SBH/Ygl (MCW), GH/OmrMcwi (MCW), FHH/EurMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), CDS, CDR, F344/NCrl (2019)
20 4896948 4896949 G A snv F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), SR/JrHsd (2020)
20 4896955 4896956 T C snv GK/FarMcwi (2019), FXLE16/Stm (2020), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/Stm (2019), FHH/EurMcwi (2019), HXB2/IpcvMcwi (2019)
20 4896958 4896959 C T snv F344/DuCrl (2019), SR/JrHsd (2020), F344/Stm (2019), F344/NCrl (2019)
20 4896960 4896961 C T snv MWF/Hsd (2019), FXLE16/Stm (2020)
20 4896961 4896962 C T snv F344/NCrl (2019), F344/DuCrl (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/Stm (2019)
20 4932163 4932164 T C snv M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), SBH/Ygl (MCW), LEXF4/Stm (2020), FXLE16/Stm (2020), BUF/N (2020), LE/Stm (2019)
20 4932175 4932176 G A snv WKY/N (MCW), WN/N (MCW), MR/N (MCW), F344/NRrrc (MCW), Buf/N (MCW), ACI/N (MCW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), SBN/Ygl (MCW), SBH/Ygl (MCW), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW)
20 4932181 4932182 C T snv FHL/EurMcwi (MCW), SBH/Ygl (MCW), GK/FarMcwi (2019), HXB31/IpcvMcwi (2019), SHRSP/A3NCrl (2019), LE/Stm (2019), LEXF10A/StmMcwi (2020), M520/N (2020), MWF/Hsd (2019), LEXF4/Stm (2020)
20 4932188 4932189 G C snv ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), ACI/N (MCW), Buf/N (MCW), MR/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), WAG/RijCrl (2020)
20 4932191 4932192 C G snv FHL/EurMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020)
20 4932197 4932198 G T snv SBH/Ygl (MCW)
20 4932208 4932209 C A snv LEXF11/Stm (2020), FXLE18/Stm (2020), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LL/MavRrrcAek (2020), MR/N (2020), PVG/Seac (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), FHL/EurMcwi (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), F344/NRrrc (MCW), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), LEXF1A/Stm (2019)
20 4932395 4932396 G A snv FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), MR/N (MCW), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
20 4932399 4932400 C T snv GK/FarMcwi (2019), SHRSP/A3NCrl (2019), HXB2/IpcvMcwi (2019)
20 4932405 4932406 C T snv ACI/EurMcwi (2019), WN/N (MCW), BUF/N (2020), BXH2/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SBN/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), ACI/N (2020)
20 4932636 4932637 C T snv SBH/Ygl (MCW), BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/N (2020), M520/NRrrcMcwi (2019)
20 4932680 4932681 A G snv CDR, CDS, GH/OmrMcwi (MCW)
20 4932690 4932691 C A snv LEW/Crl (2019), WKY/NCrl (2019)
20 4932924 4932925 C G snv F344/NCrl (2019), F344/Stm (2019), LEXF1A/Stm (2019), WAG/RijCrl (2020), LEXF2B/Stm (2019), SR/JrHsd (2020), LEXF1C/Stm (2019)
20 4933018 4933019 C T snv LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), BUF/N (2020), M520/N (2020), FXLE16/Stm (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LN/MavRrrcAek (2020)
20 4933019 4933020 A T snv LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), FXLE16/Stm (2020), BUF/N (2020)
20 4933078 4933079 G T snv ACI/N (2020), DA/OlaHsd (2019), FHH/EurMcwi (2019), ACI/EurMcwi (2019)
20 4933084 4933085 C T snv SR/JrHsd (2020), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), GH/OmrMcwi (MCW), COP/CrCrl (MCW & UW), ACI/EurMcwi (MCW), CDS, CDR, SS/JrHsdMcwi (2019)
20 4933096 4933097 G C snv SBH/Ygl (MCW)
20 4933097 4933098 T G snv WN/N (2020), WAG/RijCrl (2020), MWF/Hsd (2019), M520/N (2020), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), LEW/Crl (2019), FXLE16/Stm (2020), BUF/N (2020), WKY/N (2020), WKY/NCrl (2019)
20 4933108 4933109 G A snv LL/MavRrrcAek (2020), LEXF3/Stm (2020), LEXF2B/Stm (2019), SS/JrHsdMcwi (2019), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), LEXF1C/Stm (2019), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), F344/Stm (2019), FXLE18/Stm (2020), SR/JrHsd (MCW)
20 4933110 4933111 G T snv WN/N (2020), WKY/N (2020), LEW/Crl (2019), WKY/NCrl (2019)
20 4933126 4933127 G A snv BUF/N (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020)
20 4934464 4934465 T C snv SBN/Ygl (MCW)
20 4934524 4934525 G A snv SBH/Ygl (MCW), LE/Stm (RGD), BUF/N (2020), FXLE16/Stm (2020), LEXF4/Stm (2020), M520/N (2020), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), LE/Stm (2019)
20 4934827 4934828 C G snv FHL/EurMcwi (MCW)
20 4934830 4934831 C T snv FHL/EurMcwi (MCW)
20 4934834 4934835 G T snv ACI/EurMcwi (MCW)
20 4934837 4934838 C G snv FHL/EurMcwi (MCW)
20 4934851 4934852 G A snv DA/OlaHsd (2019), ACI/EurMcwi (2019), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW)
20 4934908 4934909 T C snv ACI/EurMcwi (2019), DA/OlaHsd (2019), WAG/RijCrl (2020)
20 4934976 4934977 T A snv MWF/Hsd (2019)
20 4934994 4934995 C T snv COP/CrCrl (MCW & UW)
20 4935007 4935008 T C snv COP/CrCrl (MCW & UW)
20 4935022 4935023 C G snv COP/CrCrl (MCW & UW)
20 4935027 4935028 A T snv COP/CrCrl (MCW & UW)
20 4935350 4935351 G A snv SBH/Ygl (MCW), M520/NRrrcMcwi (2019), LEXF10A/StmMcwi (2020), LN/MavRrrcAek (2020), LH/MavRrrcAek (2020), LE/Stm (2019), LEXF4/Stm (2020), FXLE16/Stm (2020), BUF/N (2020), LH/MavRrrc (RGD), M520/N (2020), LE/Stm (RGD)
20 4935351 4935352 C G snv CDS, GK/FarMcwi (2019), WKY/NCrl (2019)
20 4935356 4935357 G A snv GH/OmrMcwi (MCW), FHL/EurMcwi (MCW), CDS, SBN/Ygl (MCW), CDR, WN/N (MCW), MR/N (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595925 AgrOrtholog
BioCyc Gene G2FUF-4622 BioCyc
Ensembl Genes ENSRNOG00000047966 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000063974 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000074223 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1270.10 UniProtKB/Swiss-Prot
  2.60.34.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7111250 IMAGE-MGC_LOAD
  IMAGE:7115041 IMAGE-MGC_LOAD
InterPro ATPase_NBD UniProtKB/Swiss-Prot
  Heat_shock_70_CS UniProtKB/Swiss-Prot
  HSP70_C_sf UniProtKB/Swiss-Prot
  HSP70_peptide-bd_sf UniProtKB/Swiss-Prot
  Hsp_70_fam UniProtKB/Swiss-Prot
KEGG Report rno:24963 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112562 IMAGE-MGC_LOAD
  MGC:114222 IMAGE-MGC_LOAD
NCBI Gene 24963 ENTREZGENE
PANTHER PTHR19375 UniProtKB/Swiss-Prot
Pfam HSP70 UniProtKB/Swiss-Prot
PhenoGen Hspa1l PhenoGen
PROSITE HSP70_1 UniProtKB/Swiss-Prot
  HSP70_2 UniProtKB/Swiss-Prot
  HSP70_3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF100920 UniProtKB/Swiss-Prot
  SSF100934 UniProtKB/Swiss-Prot
  SSF53067 UniProtKB/Swiss-Prot
UniProt HS71L_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q32P36 UniProtKB/Swiss-Prot
  Q6MG67 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-25 Hspa1l  heat shock protein family A (Hsp70) member 1 like  Hspa1l  heat shock protein 1-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Hspa1l  heat shock protein 1-like  Hspa1l  heat shock 70kD protein 1-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-04-13   heat shock 70kD protein 1-like  Hspa1l  heat shock 70kD protein 1-like (mapped)  Name updated 737654 APPROVED
2007-04-11 Hspa1l  heat shock 70kD protein 1-like (mapped)  Hspa1l_mapped  heat shock 70kD protein 1-like (mapped)  Data Merged 737654 APPROVED
2006-11-20 Hspa1l  heat shock 70kD protein 1-like (mapped)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-11-17 Hspa1l_mapped  heat shock 70kD protein 1-like (mapped)      Symbol and Name updated 1556543 APPROVED
2002-11-06 Hspa1l  heat shock 70kD protein 1-like    Heat shock protein 70-1l  Name updated 625702 APPROVED
2002-06-10 Hspa1l  Heat shock protein 70-1l      Symbol and Name status set to approved 70586 APPROVED