Dynlt2b-ps1 (dynein light chain Tctex-type 2B, pseudogene 1) - Rat Genome Database

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Gene: Dynlt2b-ps1 (dynein light chain Tctex-type 2B, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Dynlt2b-ps1
Name: dynein light chain Tctex-type 2B, pseudogene 1
RGD ID: 1564702
Description: Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human DYNLT2B (dynein light chain Tctex-type 2B).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: AABR07044783.1; LOC294368; RGD1564702; similar to RIKEN cDNA 0610012D17
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82019,215,094 - 19,215,666 (+)NCBIGRCr8
mRatBN7.22019,216,048 - 19,216,620 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2019,216,154 - 19,216,675 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2019,216,154 - 19,216,675 (+)NCBImRatBN7.2 Ensembl
Rnor_6.02020,519,286 - 20,520,811 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2020,519,031 - 20,520,365 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.02022,641,634 - 22,642,673 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42019,967,762 - 19,968,228 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2020,592,969 - 20,594,494 (+)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Dynlt2b-ps1
11 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000000780   ⟹   ENSRNOP00000000780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2019,216,154 - 19,216,675 (+)Ensembl
RefSeq Acc Id: XM_006223869   ⟹   XP_006223931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2020,573,811 - 20,593,941 (+)NCBI
RefSeq Acc Id: XM_006256354   ⟹   XP_006256416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.02022,641,634 - 22,642,673 (+)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000000780.4
Reference Protein Sequences
RefSeq Acc Id: XP_006223931   ⟸   XM_006223869
RefSeq Acc Id: XP_006256416   ⟸   XM_006256354
RefSeq Acc Id: ENSRNOP00000000780   ⟸   ENSRNOT00000000780

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZD38-F1-model_v2 AlphaFold D3ZD38 1-152 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564702 AgrOrtholog
BioCyc Gene G2FUF-3963 BioCyc
Ensembl Genes ENSRNOG00000000630 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000780.4 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1140.40 UniProtKB/TrEMBL
InterPro Tctex-1-like UniProtKB/TrEMBL
  Tctex-1-like_sf UniProtKB/TrEMBL
NCBI Gene 294368 ENTREZGENE
PANTHER DYNEIN LIGHT CHAIN TCTEX-TYPE PROTEIN 2B UniProtKB/TrEMBL
  PTHR21255 UniProtKB/TrEMBL
Pfam Tctex-1 UniProtKB/TrEMBL
PhenoGen Dynlt2b-ps1 PhenoGen
RatGTEx ENSRNOG00000000630 RatGTEx
UniProt D3ZD38_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Dynlt2b-ps1  dynein light chain Tctex-type 2B, pseudogene 1  RGD1564702  similar to RIKEN cDNA 0610012D17  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1564702  similar to RIKEN cDNA 0610012D17  AABR07044783.1    Data merged from RGD:15003211 737654 PROVISIONAL
2019-11-08 AABR07044783.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1564702  similar to RIKEN cDNA 0610012D17   RGD1564702_predicted  similar to RIKEN cDNA 0610012D17 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564702_predicted  similar to RIKEN cDNA 0610012D17 (predicted)  LOC294368  similar to RIKEN cDNA 0610012D17  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC294368  similar to RIKEN cDNA 0610012D17      Symbol and Name status set to provisional 70820 PROVISIONAL