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Gene: Prrt1 (proline-rich transmembrane protein 1) Rattus norvegicus
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Symbol: Prrt1
Name: proline-rich transmembrane protein 1
RGD ID: 1359348
Description: Predicted to have receptor regulator activity. Predicted to be involved in several processes, including learning or memory; long-term synaptic potentiation; and regulation of AMPA receptor activity. Localizes to glutamatergic synapse and integral component of postsynaptic membrane. Orthologous to human PRRT1 (proline rich transmembrane protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: dispanin subfamily D member 1; DSPD1; MGC109407; Ng5; Orf31
Orthologs:
Homo sapiens (human) : PRRT1 (proline rich transmembrane protein 1)  HGNC  Alliance
Mus musculus (house mouse) : Prrt1 (proline-rich transmembrane protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Prrt1 (proline rich transmembrane protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PRRT1 (proline rich transmembrane protein 1)
Canis lupus familiaris (dog) : PRRT1 (proline rich transmembrane protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prrt1 (proline rich transmembrane protein 1)
Sus scrofa (pig) : PRRT1 (proline rich transmembrane protein 1)
Chlorocebus sabaeus (African green monkey) : PRRT1 (proline rich transmembrane protein 1)
Heterocephalus glaber (naked mole-rat) : Prrt1 (proline rich transmembrane protein 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0204,392,605 - 4,396,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,392,626 - 4,396,250 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,471,963 - 6,475,627 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,219,837 - 4,223,478 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1204,220,084 - 4,221,821 (-)NCBI
Celera203,908,661 - 3,912,304 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Prrt1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1359348
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.