RT1-M3-3-ps (RT1 class I, locus M3, gene 3, pseudogene) - Rat Genome Database

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Gene: RT1-M3-3-ps (RT1 class I, locus M3, gene 3, pseudogene) Rattus norvegicus
Analyze
Symbol: RT1-M3-3-ps
Name: RT1 class I, locus M3, gene 3, pseudogene
RGD ID: 1597080
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: RT1 class 1, M3, gene 3; RT1 class I, locus M3, gene 3; RT1-M3-3
Related Functional Gene: RT1-M3-1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,008,512 - 1,013,070 (-)NCBIGRCr8
mRatBN7.2201,003,256 - 1,007,816 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx201,035,140 - 1,039,656 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,038,600 - 1,043,118 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.020997,169 - 1,001,777 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0201,307,347 - 1,311,905 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0201,301,103 - 1,305,661 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,090,792 - 1,095,350 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera201,742,040 - 1,746,598 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15060004  


Genomics

Variants

.
Variants in RT1-M3-3-ps
29 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013624629Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat


Expression

RNA-SEQ Expression


Sequence



Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-5037 BioCyc
NCBI Gene 414808 ENTREZGENE
PhenoGen RT1-M3-3-ps PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-12-07 RT1-M3-3-ps  RT1 class I, locus M3, gene 3, pseudogene  RT1-M3-3  RT1 class I, locus M3, gene 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-09-15 RT1-M3-3  RT1 class I, locus M3, gene 3  RT1-M3-3  RT1 class 1, M3, gene 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 RT1-M3-3  RT1 class 1, M3, gene 3      Symbol and Name status set to provisional 70820 PROVISIONAL