Bp144 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

QTL: Bp144 (Blood pressure QTL 144) Rattus norvegicus

Symbol: Bp144
Name: Blood pressure QTL 144
RGD ID: 724519
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: mean arterial blood pressure   (CMO:0000009)    
LOD Score: Not Available
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2201 - 3,624,629RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0201 - 5,192,000RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0201 - 6,938,847RGDRnor5.0
RGSC_v3.4201 - 3,663,618RGDRGSC3.4
RGSC_v3.1200 - 3,663,010RGD
Cross Type: intercross
Strains Crossed: BXH/Ipcv 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
hypertension  (IDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BXH/Ipcv  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Use of AFLP markers for gene mapping and QTL detection in the rat. Otsen M, etal., Genomics 1996 Nov 1;37(3):289-94.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
40950750LOC120098879uncharacterized LOC120098879203208238315Rat
1584276LOC686288similar to olfactory receptor Olr1668205801472100Rat
41305554Slc37a3-ps1solute carrier family 37, member 3, pseudogene 1207845279685Rat
41224295Cbwd1-ps1COBW domain containing 1, pseudogene 1208099387517Rat
620629Tmlhetrimethyllysine hydroxylase, epsilon2091234138942Rat
41021639Dnd1-ps3DND microRNA-mediated repression inhibitor 1, pseudogene 3209871299682Rat
1306580Clic2chloride intracellular channel 220149337164375Rat
2324146Kmt5c-ps1lysine methyltransferase 5C, pseudogene 120168241172655Rat
1332634Or2n1eolfactory receptor family 2 subfamily N member 1E20175987176925Rat
1333389Or2j5-ps1olfactory receptor family 2 subfamily J member 5, pseudogene 120221259221687Rat
1333994Or2n1holfactory receptor family 2 subfamily N member 1H20240423241361Rat
1333177Or2j3olfactory receptor family 2 subfamily J member 320253033253971Rat
1333488Or2n1f-ps1olfactory receptor family 2 subfamily N member 1F, pseudogene 120262016262955Rat
1332701Or2n1golfactory receptor family 2 subfamily N member 1G20275731276669Rat
1333006Or2h16-ps1olfactory receptor family 2 subfamily H member 16, pseudogene 120281975282791Rat
1333465Olr1675olfactory receptor 167520291840292778Rat
1332856Olr1676-psolfactory receptor pseudogene 167620297043297982Rat
41276637LOC120098956olfactory receptor 2B11-like20311678312616Rat
1332652Or2n1nolfactory receptor family 2 subfamily N member 1N20326970329747Rat
1333696Or2n1lolfactory receptor family 2 subfamily N member 1L20340574341512Rat
1332697Or2n1kolfactory receptor family 2 subfamily N member 1K20353663354706Rat
1333618Or2n1jolfactory receptor family 2 subfamily N member 1J20368835369773Rat
1333942Or2n1iolfactory receptor family 2 subfamily N member 1I20384624385562Rat
1333502Or2n1olfactory receptor family 2 subfamily N member 120412597413535Rat
1334222Or2h15olfactory receptor family 2 subfamily H member 1520428550429491Rat
1332730Or2y3b-ps1olfactory receptor family 2 subfamily Y member 3B, pseudogene 120485003485966Rat
1594569Or2g7olfactory receptor family 2 subfamily G member 720494354495307Rat
735190Or10al7olfactory receptor family 10 subfamily AL member 720506727507692Rat
9430900Fxn-ps1frataxin, pseudogene 120529440530693Rat
2323968LOC100362810frataxin-like20531859539018Rat
1594568Eef2-ps5eukaryotic translation elongation factor 2, pseudogene 520553605556975Rat
1333186Or14j5eolfactory receptor family 14 subfamily J member 5E20593545594549Rat
1333506Or14j5colfactory receptor family 14 subfamily J member 5C20612159613130Rat
1333813Or14j5olfactory receptor family 14 subfamily J member 520634717635688Rat
1332763Or14j5bolfactory receptor family 14 subfamily J member 5B20649864661008Rat
1334122Or14j6olfactory receptor family 14 subfamily J member 620679563680531Rat
1333127Or14j1olfactory receptor family 14 subfamily J member 120689684690646Rat
1304558Dstnl1destrin-like 120704091705776Rat
1332782Or2b4olfactory receptor family 2 subfamily B member 420706464707408Rat
1333191Or2g1olfactory receptor family 2 subfamily G member 120719200720165Rat
41130760LOC120099023small nucleolar RNA SNORA1720727129727259Rat
1333123Or10al6-ps1olfactory receptor family 10 subfamily AL member 6, pseudogene 120738257739607Rat
1334404Or10al4colfactory receptor family 10 subfamily AL member 4C20752444753409Rat
1333179Or10al4-ps1olfactory receptor family 10 subfamily AL member 4, pseudogene 120761829762794Rat
1333241Or10al4bolfactory receptor family 10 subfamily AL member 4B20779579780544Rat
1334132Or10al27olfactory receptor family 10 subfamily AL member 2720789272790237Rat
1333192Or10al5bolfactory receptor family 10 subfamily AL member 5B20798038810925Rat
1333714Or2g25olfactory receptor family 2 subfamily G member 2520810880811833Rat
1334092Or2ay1-ps1olfactory receptor family 2 subfamily AY member 1, pseudogene 120817303817659Rat
1334388Or14j3bolfactory receptor family 14 subfamily J member 3B20824274825212Rat
41096964Ilrun-ps1inflammation and lipid regulator with UBA-like and NBR1-like domains, pseudogene 120828684830678Rat
1333667Or14j10bolfactory receptor family 14 subfamily J member 10B20833814834752Rat
9237405LOC10369437360S ribosomal protein L29 pseudogene20835529836911Rat
1333357Or14j10-ps1olfactory receptor family 14 subfamily J member 10, pseudogene 120845816846753Rat
1334040Or14j3olfactory receptor family 14 subfamily J member 320864926865864Rat
1332733Or14j3dolfactory receptor family 14 subfamily J member 3D20872996873910Rat
1332628Or14j3eolfactory receptor family 14 subfamily J member 3E20885216886154Rat
1333409Or14j15olfactory receptor family 14 subfamily J member 1520897851898789Rat
1332895Or14j11-ps1olfactory receptor family 14 subfamily J member 11, pseudogene 120916517917441Rat
1333579Or14j10e-ps1olfactory receptor family 14 subfamily J member 10E, pseudogene 120924644925582Rat
2301673Olr1869olfactory receptor 186920964172965125Rat
3493RT1-M2RT1 class Ib, locus M220978940981188Rat
7746988Sppl2a-ps1signal peptide peptidase-like 2A, pseudogene 120982366983930Rat
1303153Or12d17olfactory receptor family 12 subfamily D member 1720992771993736Rat
1597080RT1-M3-3-psRT1 class I, locus M3, gene 3, pseudogene2010032561007816Rat
1333613Or11a7-ps1olfactory receptor family 11 subfamily A member 7, pseudogene 12010118081012425Rat
1332691Or1o11olfactory receptor family 1 subfamily O member 112010146531015582Rat
1334423Or11a8-ps1olfactory receptor family 11 subfamily A member 8, pseudogene 12010275671028149Rat
1332646Or1o2f-ps1olfactory receptor family 1 subfamily O member 2F, pseudogene 12010300461030974Rat
1333661Olr1717-psolfactory receptor pseudogene 17172010394191039693Rat
1333711Or1o1olfactory receptor family 1 subfamily O member 12010411781042107Rat
1333544Or11a9-ps1olfactory receptor family 11 subfamily A member 9, pseudogene 12010533531053907Rat
1333629Olr1720olfactory receptor 17202010553481056277Rat
1333921Or11a11-ps1olfactory receptor family 11 subfamily A member 11, pseudogene 12010716311072087Rat
1334000Or1o2colfactory receptor family 1 subfamily O member 2C2010734821074411Rat
1333173Or11a4b-ps1olfactory receptor family 11 subfamily A member 4B, pseudogene 12010951331095743Rat
1334019Or1o11colfactory receptor family 1 subfamily O member 11C2010971811098110Rat
1333215Olr1725-psolfactory receptor pseudogene 17252011091641109978Rat
1332651Or1o11bolfactory receptor family 1 subfamily O member 11B2011118161112745Rat
1334296Or12d14bolfactory receptor family 12 subfamily D member 14B2011224501127488Rat
1334231Olr1728-psolfactory receptor pseudogene 17282011283111129216Rat
1564509Or12d14olfactory receptor family 12 subfamily D member 142011327521134424Rat
41018543LOC120099021U2 spliceosomal RNA2011567921156937Rat
1334062Or5v1bolfactory receptor family 5 subfamily V member 1B2011580731159026Rat
1333933Olr1731olfactory receptor 17312011719321176932Rat
1592993Lmo7-ps1LIM domain 7, pseudogene 12011860901187727Rat
1332857Or11a10-ps1olfactory receptor family 11 subfamily A member 10, pseudogene 12011998221200447Rat
1333940Or1o2bolfactory receptor family 1 subfamily O member 2B2012018511202780Rat
41089744LOC120099046U6 spliceosomal RNA2012285061228611Rat
1334232Or12d13olfactory receptor family 12 subfamily D member 132012456891246630Rat
41243640LOC120098822uncharacterized LOC1200988222012527121267933Rat
1334001Or12d2olfactory receptor family 12 subfamily D member 22012590081259934Rat
1332623Or12d2bolfactory receptor family 12 subfamily D member 2B2012741521275078Rat
1333060Or12d2colfactory receptor family 12 subfamily D member 2C2012906141291540Rat
1333138Or12d14colfactory receptor family 12 subfamily D member 14C2012966421297532Rat
1333738Or1o2eolfactory receptor family 1 subfamily O member 2E2013184711319400Rat
3494RT1-M3-1RT1 class Ib, locus M3, gene 12013239761328126Rat
1333413Or1o2d-ps1olfactory receptor family 1 subfamily O member 2D, pseudogene 12013352021336098Rat
1333982Or11b1-ps1olfactory receptor family 11 subfamily B member 1, pseudogene 12013387951339505Rat
1597083RT1-M3-2-psRT1 class I, locus M3, gene 2, pseudogene2013418541342837Rat
1333568Or1o2olfactory receptor family 1 subfamily O member 22013473811348310Rat
1333000Or11a4olfactory receptor family 11 subfamily A member 42013545271355468Rat
1332620Or10c1olfactory receptor family 10 subfamily C member 12013706021371540Rat
1563740Olfr94-ps1olfactory receptor 94, pseudogene 12013834251384620Rat
69418Ubdubiquitin D2013854871387438Rat
1332725Or2h2colfactory receptor family 2 subfamily H member 2C2013989641399902Rat
1593748Vhllvon Hippel-Lindau tumor suppressor-like2014080651414755Rat
1333611Or2h1c-ps1olfactory receptor family 2 subfamily H member 1C, pseudogene 12014150031415941Rat
1333395Or2h1bolfactory receptor family 2 subfamily H member 1B2014400731441011Rat
1333311Or2h1olfactory receptor family 2 subfamily H member 12014459801446918Rat
1332876Or2h2olfactory receptor family 2 subfamily H member 22014540611454993Rat
621537Gabbr1gamma-aminobutyric acid type B receptor subunit 12014645341494114Rat
3102Mogmyelin oligodendrocyte glycoprotein2015131371523473Rat
1302981Zfp57zinc finger protein 572015213231534884Rat
1595816RT1-M5RT1 class Ib, locus M52015464961548948Rat
1562593RT1-M4RT1 class Ib, locus M42015520721555823Rat
1597084Rps15-ps1ribosomal protein S15, pseudogene 12015645011564989Rat
1598232RT1-M6-1RT1 class I, locus M6, gene 12015662201569151Rat
1564067Znrd1as1ZNRD1 antisense RNA 12015681051595084Rat
1595815RT1-M6-2RT1 class I, locus M6, gene 22015832671587099Rat
1303114Polr1hRNA polymerase I subunit H2015949361598854Rat
1303163Ppp1r11protein phosphatase 1, regulatory (inhibitor) subunit 112016013501604857Rat
628854Rnf39ring finger protein 392016047941610283Rat
7513962LOC102554813uncharacterized LOC1025548132016156941622041Rat
1308607Trim31tripartite motif-containing 312016531651666494Rat
1359645Trim40tripartite motif-containing 402016761881685906Rat
1597065Ppp1cb-ps1protein phosphatase 1, catalytic subunit, beta isoform, pseudogene 12016776631678586Rat
1597066Rpl39-ps1ribosomal protein 39 pseudogene 12016880771688661Rat
1597067Pbp-psPbp pseudogene2016889191689377Rat
1359438Trim10tripartite motif-containing 102016895541698948Rat
6496746Trim15tripartite motif containing 152017009051710249Rat
1597068Trim15-ps1tripartite motif-containing 15, pseudogene 12017014311704183Rat
1359126Trim26tripartite motif-containing 262017082971731176Rat
41360187LOC120099074small nucleolar RNA SNORA512017261281726261Rat
1597069RT1-M10-4-psRT1 class I, locus M10, gene 4, pseudogene2017699091772038Rat
15970703298a3RT1 class I, pseudogene 3298a32017802761780538Rat
1597071RT1-M10-3-psRT1 class I, locus M10, gene 3, pseudogene2017914201793027Rat
15970723281a3RT1 class I, pseudogene 3281a32017976531797898Rat
15970733258a2RT1 class I, pseudogene 3258a22018210071821191Rat
15970743252a3RT1 class I pseudogene 3252a32018267651826955Rat
1597075RT1-M8-psRT1 class I, locus M8, pseudogene2018284871829703Rat
1597076RT1-M7-psRT1 class I, locus M7, pseudogene2018301191832303Rat
1587041RT1-M1-5RT1 class I, M1, gene 52018586081860708Rat
1359375RT1-M1-4RT1 class I, locus M1, gene 42018913651893585Rat
1597077RT1-M1-3-psRT1 class I, locus M1, gene 3, pseudogene2018937761895367Rat
1598230Trim39-psTrim39 pseudogene2019017281901822Rat
1359434RT1-M1-2RT1 class I, locus M1, gene 22019095061914364Rat
1597079RT1-M1-1-psRT1 class I, locus M1, gene 1, pseudogene2019374431940047Rat
1597078Ppid-ps1peptidylprolyl isomerase D, pseudogene 12019459011946181Rat
7624899LOC102546590HLA class I histocompatibility antigen, A-24 alpha chain-like2019582701965247Rat
1597081RT1-M10-2-psRT1 class I, locus M10, gene 2, pseudogene2019627271964874Rat
1359635RT1-M10-1RT1 class I, locus M10, gene 12019867881989101Rat
15970823082ex4-5RT1 class pseudogene 3082ex4-52019963271996756Rat
41059534LOC120098850uncharacterized LOC1200988502020023132003818Rat
1303115Trim39tripartite motif-containing 392020033202017175Rat
1303090Rpp21ribonuclease P/MRP subunit p212020181702020100Rat
1595736RT1-P2-ps1RT1 class I, locus P2, pseudogene 12020435662046079Rat
1595737Rcrg1-ps40Riken clone 5830469G19 related pseudogene 402020590012059309Rat
1595738Nerg-ps15EST221625 related pseudogene 152020602782060796Rat
15957392994a1class I gene fragment 29942020846342084890Rat
1597049Nerg-ps10EST221625 related pseudogene 102020879872088505Rat
1595754Rcrg1-ps34Riken clone 5830469G19 related pseudogene 342020912172091640Rat
1597050Rcrg1-ps24Riken clone 5830469G19 related pseudogene 242020913302091638Rat
15957532941a1a2class I gene fragment 29412020982202099016Rat
15957512945a1a2class I gene fragment 29452021016702102147Rat
1595750Rcrg1-ps36Riken clone 5830469G19 related pseudogene 362021021762102466Rat
15957582906a1class I gene fragment 29062021066692106905Rat
15957572920a1a2class I gene fragment 29202021199882120776Rat
15957562927a1class I gene fragment 29272021277762128044Rat
1595740Nerg-ps14EST221625 related pseudogene 142021311292131647Rat
1595755Nerg-ps13EST221625 related pseudogene 132021311312131649Rat
1595741Rcrg1-ps39Riken clone 5830469G19 related pseudogene 392021344712134778Rat
15957422984a1a2class I gene fragment 29842021374192137896Rat
1595743Rcrg1-ps38Riken clone 5830469G19 related pseudogene 382021379252138215Rat
15957442981a1a2class I gene fragment 29812021408552141332Rat
1595745Rcrg1-ps37Riken clone 5830469G19 related pseudogene 372021413612141652Rat
15957472959a1class I gene fragment 29592021627002162936Rat
15970562747a1a22747a1a2 pseudogene2021685922169375Rat
15944462661a1a2class I gene fragment 26612021690302169377Rat
15957492950a1class I gene fragment 29502021723322172568Rat
15957762824a1class I gene fragment 28242021723342172570Rat
1595759Rcrg1-ps33Riken clone 5830469G19 related pseudogene 332021767702177060Rat
15957602901a1a2class I gene fragment 29012021770882177566Rat
1595761Rcrg1-ps32Riken clone 5830469G19 related pseudogene 322021802042180627Rat
15944372690a1-a1a2class I gene fragment 26902021923542193135Rat
15957632879a1class I gene fragment 28792021998202200088Rat
1594433Nerg-ps9EST221625 related pseudogene 92022037872204305Rat
1595765Rcrg1-ps31Riken clone 5830469G19 related pseudogene 312022071312207439Rat
15957662869a1a2class I gene fragment 28692022187082219184Rat
1595767Rcrg1-ps30Riken clone 5830469G19 related pseudogene 302022192132219504Rat
15957682865a2class I gene fragment 28652022221552222352Rat
1595769Rcrg1-ps29Riken clone 5830469G19 related pseudogene 292022226612222951Rat
15957702860a1class I gene fragment 28602022271442227380Rat
15957712846a1a2class I gene fragment 28462022404462241228Rat
1595772Nerg-ps11EST221625 related pseudogene 112022516962252212Rat
1595773Rcrg1-ps28Riken clone 5830469G19 related pseudogene 282022550252255255Rat
15957742829a1a2class I gene fragment 28292022579702258447Rat
1595775Rcrg1-ps27Riken clone 5830469G19 related pseudogene 272022584762258767Rat
15957772812a1a2class I gene fragment 28122022752252276024Rat
1595778Rcrg1-ps26Riken clone 5830469G19 related pseudogene 262022844932284801Rat
15957792800a1a2class I gene fragment 28002022874392287916Rat
1595780Rcrg1-ps25Riken clone 5830469G19 related pseudogene 252022879452288236Rat
15957812795a1class I gene fragment 27952022924902292729Rat
15957822788a1a2class I gene fragment 2788a1a22022983962299178Rat
15970482781a1class I gene fragment 27812023058812306148Rat
15970512768a1a22768a1a2 pseudogene2023194802319957Rat
15970532764a12764a1 pseudogene2023229262323123Rat
1597054Rcrg1-ps22Riken clone 5830469G19 related pseudogene 222023234322323722Rat
15944312722a1a2class I gene fragment 27222023412322342016Rat
15944322715a1class I gene fragment 27152023487462349014Rat
1595764Nerg-ps12EST221625 related pseudogene 122023528062353324Rat
1594434Rcrg1-ps19Riken clone 5830469G19 related pseudogene 192023561362356444Rat
15944352705a1class I gene fragment 27052023590822359279Rat
15944362702a1class I gene fragment 27022023612522361491Rat
15944502641a1class I gene fragment 26412023788422379078Rat
1597058Rcrg1-ps21Riken clone 5830469G19 related pseudogene 212023832692383559Rat
1594449Rcrg1-ps14Riken clone 5830469G19 related pseudogene 142023832702383560Rat
15944482646a1a2class I gene fragment 26462023835882384066Rat
1597060Rcrg1-ps20Riken clone 5830469G19 related pseudogene 202023868072387126Rat
1594447Rcrg1-ps15Riken clone 5830469G19 related pseudogene 152023868092387128Rat
15957622886a1-a1a2class I gene fragment 28862023988522399634Rat
15944382683a1class I gene fragment 26832024063242406592Rat
1594439Nerg-ps8EST221625 related pseudogene 82024098712410388Rat
1594440Rcrg1-ps18Riken clone 5830469G19 related pseudogene 182024131962413504Rat
15944412673a1a2class I gene fragment 26732024161452416621Rat
1594442Rcrg1-ps17Riken clone 5830469G19 related pseudogene 172024166502416940Rat
15944432669a1class I gene fragment 26692024195872419784Rat
1594444Rcrg1-ps16Riken clone 5830469G19 related pseudogene 162024200932420383Rat
15944512619a1_ps2class I gene fragment 2619, pseudogene 22024386872439471Rat
15944522619a1-ps1class I gene fragment 2619, pseudogene 12024462512446518Rat
1594453Nerg-ps7EST221625 related pseudogene 72024496512450167Rat
1594454Rcrg1-ps13Riken clone 5830469G19 related pseudogene 132024529762453284Rat
15944552609a1a2class I gene fragment 26092024559282456396Rat
1594456Rcrg1-ps12Riken clone 5830469G19 related pseudogene 122024564252456708Rat
15944572600a1a2class I gene fragment 26002024652482465878Rat
1594458Rps2-ps4ribosomal protein S2, pseudogene 42024915102492420Rat
7730633Rps2-ps32ribosomal protein S2, pseudogene 322024915222492383Rat
1594459RT1-V2-ps1RT1 class I, locus V2, pseudogene 12024955672499393Rat
1594460RT1-P1-ps1RT1 class I, locus P1, pseudogene 12025033232505787Rat
15944612543a1class I gene fragment 25432025225342522770Rat
1594462Rcrg1-ps11Riken clone 5830469G19 related pseudogene 112025257162526042Rat
1594464Rcrg1-ps10Riken clone 5830469G19 related pseudogene 102025296092529917Rat
1594465Nerg-ps6EST221625 related pseudogene 62025308862531404Rat
1594466Nerg-ps5EST221625 related pseudogene 52025477202548326Rat
1594467Rcrg1-ps9Riken clone 5830469G19 related pseudogene 92025507642550859Rat
1594468Rcrg1-ps8Riken clone 5830469G19 related pseudogene 82025528552553162Rat
15944692509a1class I gene fragment 25092025562282556436Rat
1594470Rcrg1-ps7Riken clone 5830469G19 related pseudogene 72025576622557813Rat
7676736Abhd17c-ps2abhydrolase domain containing 17C, depalmitoylase, pseudogene 22025581752563607Rat
1594471Rcrg2-ps6Riken clone 2210412D01 related pseudogene 62025597562560041Rat
1594472Rcrg1-ps6Riken clone 5830469G19 related pseudogene 62025602442560657Rat
1594473Rcrg2-ps5Riken clone 2210412D01 related pseudogene 52025627012564984Rat
1594477Nerg-ps3EST221625 related pseudogene 32025657442566336Rat
1594479Rcrg1-ps4Riken clone 5830469G19 related pseudogene 42025683912570631Rat
7736232Abhd17c-ps3abhydrolase domain containing 17C, depalmitoylase, pseudogene 32025688122573376Rat
1595720Nerg-ps2EST221625 related pseudogene 22025775172577638Rat
1595722Rcrg1-ps3Riken clone 5830469G19 related pseudogene 32025798662579961Rat
1595723Rcrg1-ps2Riken clone 5830469G19 related pseudogene 22025801702580501Rat
1585554Abhd17c-ps1abhydrolase domain containing 17C, depalmitoylase, pseudogene 12025824632585077Rat
1595724Rcrg2-ps1Riken clone 2210412D01 related pseudogene 12025829212585072Rat
1595725Rcrg1-ps1Riken clone 5830469G19 related pseudogene 12025870702587419Rat
15957262464a1class I gene fragment 24642025909612591175Rat
15957272463a1a2class I gene fragment 24632025919492592650Rat
15957282461a1a2class I gene fragment 24612025941642594837Rat
2323486Srsf6-ps1serine and arginine rich splicing factor 6, pseudogene 12025950862596678Rat
15957292458a2class I gene fragment 24582025977522597967Rat
1303092RT1-T18RT1 class Ib, locus T182026052612608909Rat
41005805RT1-CE15-ps1RT1 class I, locus CE15, pseudogene 12026132432618150Rat
1595730RT1-V1-ps1RT1 class I, locus V1, pseudogene 12026132662616884Rat
1595733Rps2-ps2ribosomal protein S2, pseudogene 22026202162620944Rat
41288091LOC120093125H-2 class I histocompatibility antigen, Q7 alpha chain-like2026240732658023Rat
1595732RT1-O3-psRT1 class I, locus O3, pseudogene2026244652626661Rat
1595734RT1-O2-psRT1 class I, locus O2, pseudogene2026301102635431Rat
1562652H2-Q7-ps1histocompatibility 2, Q region locus 7 like, pseudogene 12026328982635694Rat
1595850RT1-N2RT1 class Ib, locus N22026411572645439Rat
1595920RT1-S2RT1 class Ib, locus S22026502332651654Rat
1595735Rps2-ps1ribosomal protein S2, pseudogene 12026540572654785Rat
3501RT1-O1RT1 class Ib, locus O12026551162657520Rat
1598370RT1-N3RT1 class Ib, locus N32026591322665536Rat
735037RT1-S3RT1 class Ib, locus S32026706542675411Rat
41384439LOC120098966uncharacterized LOC1200989662026817162682257Rat
1598233RT1-T24-4RT1 class I, locus T24, gene 42026845152692515Rat
727839LOC360231MHC class I RT1.O type 149 processed pseudogene2026845592743176Rat
1598233RT1-T24-4RT1 class I, locus T24, gene 42026845592743176Rat
15944252361ex4-5class I gene fragment 23612026939752694324Rat
1594426Rpl41-ps1ribosomal protein L41, pseudogene 12027044562704840Rat
41100225LOC120098968uncharacterized LOC1200989682027081982732345Rat
11408039LOC108349027uncharacterized LOC1083490272027151722733499Rat
1624211RT1-T24-3RT1 class I, locus T24, gene 32027182102730604Rat
15944272331ex4-5class I gene fragment 23312027242342724758Rat
40947914LOC120098918class I histocompatibility antigen, Non-RT1.A alpha-1 chain-like2027340232747878Rat
1303033RT1-T24-2RT1 class I, locus T24, gene 22027344152738899Rat
15944282310ex4-5class I gene fragment 23102027453912745740Rat
1359499RT1-T24-1RT1 class I, locus T24, gene 12027615412774749Rat
41301863LOC120098967uncharacterized LOC1200989672027788742783107Rat
1303051Gnl1G protein nucleolar 12027831302792115Rat
1303270Prr3proline rich 32027928682799865Rat
7630098LOC102553244uncharacterized LOC1025532442027998092802433Rat
620286Abcf1ATP binding cassette subfamily F member 12028025192815433Rat
2325510Mir877microRNA 8772028114762811560Rat
620079Ppp1r10protein phosphatase 1, regulatory subunit 102028229952838125Rat
1302998Mrps18bmitochondrial ribosomal protein S18B2028381742844260Rat
1303066Atat1alpha tubulin acetyltransferase 12028445952857809Rat
1302996RGD1302996hypothetical protein MGC:158542028578402861952Rat
1302963Dhx16DEAH-box helicase 162028620002874991Rat
1309543Ppp1r18protein phosphatase 1, regulatory subunit 182028775672887526Rat
7489035Mir6328microRNA 63282028853002885396Rat
1302966Nrmnurim2028883212892804Rat
1559468Mdc1mediator of DNA damage checkpoint 12028936932912394Rat
628596Tubb5tubulin, beta 5 class I2029127792916928Rat
70991Flot1flotillin 12029178642927993Rat
1303321Ier3immediate early response 32029283782929582Rat
7501082LOC102553445uncharacterized LOC1025534452029536122954465Rat
7678499LOC102553505uncharacterized LOC1025535052029620292972097Rat
2313830Cb707485hypothetical LOC1003107832030213903024364Rat
2252Ddr1discoidin domain receptor tyrosine kinase 12030424943064442Rat
1303309Gtf2h4general transcription factor 2H subunit 42030713283076990Rat
1303122Vars2valyl-tRNA synthetase 2, mitochondrial2030771323087994Rat
1303180Sfta2surfactant associated 22030935693094299Rat
1303125Mucl3mucin like 32031006523108569Rat
1302953CB741658CB741658 gene2031190503122302Rat
41289706LOC120098824uncharacterized LOC1200988242031507553162973Rat
2324335Mt1mmetallothionein 1M2031590233159401Rat
41331161LOC120098825uncharacterized LOC1200988252031688533169716Rat
1562885RGD1562885similar to RIKEN cDNA 2300002M232031723303173886Rat
41360741LOC120098827uncharacterized LOC1200988272031788873183700Rat
1598543Cdsncorneodesmosin2031794323185854Rat
1594430Rpl22-ps1ribosomal protein L22, pseudogene 12031901483190745Rat
41102118LOC12009882660S ribosomal protein L22-like 12031901523190747Rat
1591981Psors1c2psoriasis susceptibility 1 candidate 22032025723203560Rat
1302992Cchcr1coiled-coil alpha-helical rod protein 12032056753218437Rat
1302974Tcf19transcription factor 192032187563222861Rat
1359491Pou5f1POU class 5 homeobox 12032231283227891Rat
1359403RT1-CE16RT1 class I, locus CE162032577523260683Rat
11357632LOC108353253uncharacterized LOC1083532532032606973290136Rat
1594403Cdk2ap1-ps8Cdk2ap1-ps8 pseudogene2032679053268051Rat
1359630RT1-CE15RT1 class I, locus CE152032760543279059Rat
41066463LOC120098828uncharacterized LOC1200988282032790753280604Rat
1594404LOC224733l-9LOC224733l-9 pseudogene2032824953282800Rat
1594405Cdk2ap1-ps7Cdk2ap1-ps7 pseudogene2032896063289752Rat
1359342RT1-CE14RT1 class I, locus CE142032966543300795Rat
1359196RT1-CE13RT1 class I, locus CE132033149843318037Rat
41203922LOC120098829uncharacterized LOC1200988292033180513324485Rat
1594406Cdk2ap1-ps6Cdk2ap1-ps6 pseudogene2033261663327363Rat
1594407Sacm2l-ps7Sacm2l-ps7 pseudogene2033307463331375Rat
1594408Sacm2l-ps6Sacm2l-ps6 pseudogene2033314613331539Rat
1594409Sacm2l-ps5Sacm2l-ps5 pseudogene2033317283332881Rat
1359103RT1-CE12RT1 class I, locus CE122033394933342533Rat
1359483RT1-CE11RT1 class I, locus CE112033555473358500Rat
41049112LOC120098832uncharacterized LOC1200988322033588293382786Rat
1594410LOC224733l-8LOC224733l-8 pseudogene2033619303362233Rat
41058812LOC120098830uncharacterized LOC1200988302033655733371222Rat
41366743LOC120098834uncharacterized LOC1200988342033674193369577Rat
1594411Cdk2ap1-ps5Cdk2ap1-ps5 pseudogene2033690473369193Rat
1359292RT1-CE10RT1 class I, locus CE102033772843380301Rat
1594412LOC224733l-7LOC224733l-7 pseudogene2033831633383468Rat
1595868RT1-CE5RT1 class I, locus CE52034034183479476Rat
1594413RT1-CE9-ps1RT1 class I, locus CE9, pseudogene 12034036553406844Rat
1594414RT1-CE8-ps1RT1 class I, locus CE8, pseudogene 12034182653421623Rat
1594415LOC224733l-6LOC224733l-6 pseudogene2034236423423957Rat
1594416Cdk2ap1-ps4Cdk2ap1-ps4 pseudogene2034289273430126Rat
1598234RT1-CE4RT1 class I, locus CE42034315093504535Rat
1595786RT1-CE7RT1 class I, locus CE72034342053437152Rat
41176734LOC120098833uncharacterized LOC1200988332034373733439343Rat
1594417LOC224733l-5LOC224733l-5 pseudogene2034397233440020Rat
1303017RT1-CE6RT1 class I, locus CE62034609793461929Rat
1594418Sacm2l-ps4Sacm2l-ps4 pseudogene2034680353469175Rat
1594419LOC224733l-4LOC224733l-4 pseudogene2034828943483196Rat
1594420Cdk2ap1-ps3Cdk2ap1-ps3 pseudogene2034930953493240Rat
41193024LOC120098831uncharacterized LOC1200988312035045483505772Rat
1594421LOC224733l-3LOC224733l-3 pseudogene2035079743508279Rat
1598231RT1-CE3RT1 class I, locus CE32035166473520938Rat
1594422Cdk2ap1-ps2Cdk2ap1-ps2 pseudogene2035335093534644Rat
1598235RT1-CE2RT1 class I, locus CE22035384523541841Rat
70923Ddx39bDExD-box helicase 39B2035477023585064Rat
1594423Sacm2l-ps3Sacm2l-ps3 pseudogene2035484813548940Rat
1595869RT1-CE1RT1 class I, locus12035557793559487Rat
41374192Snord83Small nucleolar RNA SNORD832035787663578840Rat
41079206LOC120099056small nucleolar RNA SNORD832035839713584049Rat
1303186Atp6v1g2ATPase H+ transporting V1 subunit G22035876813591309Rat
1303310Nfkbil1NFKB inhibitor like 12035899743608348Rat
3020Ltalymphotoxin alpha2036188533621324Rat
3876Tnftumor necrosis factor2036220113624629Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
11203D20Rhw115220157756157908Ratregion
11206D20Arb21642026463952646556Ratregion
11206D20Arb21642026664952666654Ratregion
11207D20Wox52592026588952659158Ratregion
11208D20Mgh32462034177563417890Ratregion
11208D20Mgh32462035168013516931Ratregion
11209D20Wox42412034177613417890Ratregion
11209D20Wox42412035168063516931Ratregion
34349D20Mgh61202015826631582799Ratregion
34749D20UW11522036216493621791Ratregion
34749D20UW11522036216493621791Ratregion
11428D20Wox31152036216563621771Ratregion
11428D20Wox31152036216563621771Ratregion
35188D20Rat12282016589031659140Ratregion
35593D20Rat171722033967533396913Ratregion
40208D20Rat471392015278421527959Ratregion
41562D20Rat461682028925972892739Ratregion
43140D20Rat712322028836772883902Ratregion
45662D20Got32242014128431413067Ratregion
45662D20Got32242014128431413191Ratregion
45668D20Got21272030900783090202Ratregion
1576378D20Ztm11742036215993621773Ratregion
1576378D20Ztm11742036215993621773Ratregion
1631186D20Ulb12212015973001597521Ratregion
1626722D20Rhw81792013946691394848Ratregion
1626732D20Rhw61712013698611370034Ratregion
1626748D20Rhw51512013444401344591Ratregion
1626752D20Rhw216820502515502683Ratregion
1626762D20Rhw41702013310461331216Ratregion
1626766D20Rhw71832013765101376691Ratregion
1626772D20Rhw315220508660508812Ratregion
1628504D20Got12413920998713998852Ratregion
1629880D20Wox201952014861711486366Ratregion
1638494D20Got1261792016360171636193Ratregion
1633553D20Wox152026464072646531Ratregion
1633553D20Wox152026665072666629Ratregion
1639882D20Got10016020157750157910Ratregion
1637381D20Wox1816020739257739417Ratregion
1632509D20Got11016120196658196819Ratregion
2303201D20Yum91562018750751875233Ratregion
2303213D20Yum361562029236622924126Ratregion
2303213D20Yum361562029239702924126Ratregion
2303221D20Yum51682017577611757929Ratregion
2303229D20Yum202152021981452198360Ratregion
2303231D20Yum291162025773842577501Ratregion
2303235D20Yum371862029776932977879Ratregion
2303237D20Yum842392026612162661459Ratregion
2303241D20Yum281652025552972555462Ratregion
2303245D20Yum101542019203081920462Ratregion
2303247D20Yum311792026884992688678Ratregion
2303251D20Yum381512030050823005233Ratregion
2303255D20Yum411672031366703136837Ratregion
2303257D20Yum71752018274471827622Ratregion
2303259D20Yum192021026992102918Ratregion
2303259D20Yum192022231852223404Ratregion
2303259D20Yum192022590002259219Ratregion
2303259D20Yum192022884692288688Ratregion
2303259D20Yum192023239562324175Ratregion
2303259D20Yum192024206172420836Ratregion
2303261D20Yum32042016792611679465Ratregion
2303263D20Yum61962017823541782550Ratregion
2303265D20Yum472272035761103576337Ratregion
2303267D20Yum402372031078673108104Ratregion
2303271D20Yum422452031660293166274Ratregion
2303277D20Yum21762016229321623108Ratregion
2303279D20Yum142102020646862064896Ratregion
2303281D20Yum341662028072422807408Ratregion
2303283D20Yum42062016967321696938Ratregion
2303285D20Yum231572022772142277371Ratregion
2303293D20Yum331632027664602766623Ratregion
2303295D20Yum122152019739651974180Ratregion
2303301D20Yum391672030573303057497Ratregion
7206058Tubb52012029159292916130Ratregion
7206082Pou5f13472032245213224868Ratregion
503606110T19720657094657291Ratregion
5036516Tctex52022016036571603859Ratregion
5039116RH1275211862026449982645184Ratregion
5039134RH1275322032033293163329519Ratregion
5031244PMC112151P14702036230593623529Ratregion
5031244PMC112151P14702036230593623529Ratregion
5031256PMC116546P11712036235303623701Ratregion
5031256PMC116546P11712036235303623701Ratregion
5026276RH13159219020142226142416Ratregion
5034400BE1170581502028555672855717Ratregion
5026550RH1326411822017098361710018Ratregion
5029529Bat1_microsatellite1412035727293572876Ratregion
5027173G351001392015533051553432Ratregion
5029743BI2844841902027253132725503Ratregion
5032801RH1353492002026455442645744Ratregion
5030335AI1132372152036204783620693Ratregion
5030335AI1132372152036204783620693Ratregion
5030981BF4053041642026775592677730Ratregion
5031159BI2987341542026850512685205Ratregion
5031159BI2987341542027619432762097Ratregion
5051911RH947291752036241973624375Ratregion
5051911RH947291752036241973624375Ratregion
5052061RH948173302036226943623024Ratregion
5052061RH948173302036226943623024Ratregion
5056067RH1441641562015176291517785Ratregion
5051913RH947301452036216583621793Ratregion
5051913RH947301452036216583621793Ratregion
5055647RH1439211712034372183437388Ratregion
5055647RH1439211712035045463504716Ratregion
5056361RH1443342602035726013572969Ratregion
5052420AU04204616520705464705629Ratregion
5052549AI450394942028778142877908Ratregion
5050036RH1338252012014908131491014Ratregion
5058452BE0961391512016157631615914Ratregion
5058492AW5238911012026519642652065Ratregion
5049974RH1337892182017065081706726Ratregion
5041828RH1290821692029179092918078Ratregion
5044336RH1305442052013856821385887Ratregion
5041050RH1286341952020197052020049Ratregion
5045780RH1313742052016048491605054Ratregion
5046034RH1315202132027253662725579Ratregion
5046070RH1315411812031795223179703Ratregion
5046162RH13159420620146218146424Ratregion
5046292RH1316681942028616622861856Ratregion
5046306RH1316772062020881932088399Ratregion
5046306RH1316772062023094672309673Ratregion
5046592RH1318422122016045981604808Ratregion
5047646RH1324471802032022713202451Ratregion
5046728RH1319201832029284482928631Ratregion
5049232RH1333611902028937742893964Ratregion
5048046RH1326772032032645543264757Ratregion
5048046RH1326772032032862503286454Ratregion
5048046RH1326772032033656903365894Ratregion
5048160RH1327432192027832782783761Ratregion
5046938RH13204102030936733094016Ratregion
5048576RH132983982026794032679501Ratregion
5049578RH13356102033108593311041Ratregion
5049578RH13356102033517533351935Ratregion
5040020RH1280431812028439812844162Ratregion
5039338RH1276491822029159642916146Ratregion
5040746RH1284591892028150852815274Ratregion
5040886RH1285402092032225723222781Ratregion
5073932RH1377222182019603251960542Ratregion
5075544RH1386551712036243603624532Ratregion
5075544RH1386551712036243603624532Ratregion
5075626RH1387031562014686891468845Ratregion
5076756RH1393601722017083311708503Ratregion
5077736RH1399281872028890112889198Ratregion
5077998RH1400822102028101602810370Ratregion
5078746RH1405282272015934971593724Ratregion
5078264RH1402392162026443762644590Ratregion
5078264RH1402392162026648532665068Ratregion
5078568RH1404191992017105451710744Ratregion
5079300RH1409011512029178632918014Ratregion
5073334RH1373761502027998512800001Ratregion
5080420RH1415691802033285753328755Ratregion
5080420RH1415691802033285753328755Ratregion
5080420RH1415691802034315273431707Ratregion
5080420RH1415691802034315273431707Ratregion
5074338RH1379591892020057682005957Ratregion
5072182RH1367001312014921381492269Ratregion
5064976BI3029541712010503521050521Ratregion
5060992BF38967222020108897109117Ratregion
5062754AW5342601582015887201588878Ratregion
5065894AA9979091322036054513605583Ratregion
5061146BI2930461612032058003205961Ratregion
5082179BI2803351552033769373377091Ratregion
5087138BQ1943501662033815393381705Ratregion
5087138BQ1943501662034812553481421Ratregion
5087518PMC26794P36722036230583623730Ratregion
5087518PMC26794P36722036230583623730Ratregion
5084518AI1775601112034447173445771Ratregion
5081823BI2737851742029159642916138Ratregion
5082079BF4159531322020166862016818Ratregion
5084930AI2367511222028886512888773Ratregion
5088153Trim266562017111981711854Ratregion
5085493AI5480471642028573642857528Ratregion
5085689BM3834641752034224963422670Ratregion
5503210ha2028020235421236610Ratregion
5503560UniSTS:46395902036228633623794Ratregion
5503560UniSTS:46395902036228633623794Ratregion
5504522PMC26660P43182029155792915897Ratregion
5505126H2-T234392026711772672392Ratregion
5505241Olfr12452020706758707278Ratregion
5505546D9S18808732013853901386263Ratregion
5505982UniSTS:4967391022029289402929042Ratregion
5505911UniSTS:4960421042014666241466728Ratregion
5506207Pou5f11772032233763223553Ratregion
5500507RH12688102035725693572935Ratregion
5501728UniSTS:2670092022029158572916059Ratregion
5505504D20S83572720631297632024Ratregion
Position Markers

Flank 1: (D20Utr1) No map positions available.
Peak: (D20Utr1) No map positions available.
Flank 2: (Tnf)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,622,011 - 3,624,629 (+)NCBI
mRatBN7.2 Ensembl203,622,011 - 3,624,629 (+)Ensembl
UTH_Rnor_SHR_Utx204,321,864 - 4,324,463 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.0203,683,924 - 3,686,523 (+)NCBI
UTH_Rnor_WKY_Bbb_1.0204,221,516 - 4,224,112 (+)NCBI
Rnor_6.0205,189,382 - 5,192,000 (-)NCBI
Rnor_6.0 Ensembl204,855,829 - 4,858,447 (+)Ensembl
Rnor_6.0 Ensembl205,189,390 - 5,192,000 (-)Ensembl
Rnor_5.0206,936,229 - 6,938,847 (+)NCBI
RGSC_v3.4203,661,000 - 3,663,618 (+)NCBI
Celera204,400,860 - 4,403,478 (-)NCBI
RH 3.4 Map20 RGD
Cytogenetic Map20p12NCBI


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013624629Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
737973Pia21Pristane induced arthritis QTL 214.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2036216564606812Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Bp144

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross