Gene: Trim40 (tripartite motif-containing 40) Rattus norvegicus
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Symbol: Trim40
Name: tripartite motif-containing 40
Description: ENCODES a protein that exhibits zinc ion binding (inferred); INVOLVED IN negative regulation of cell growth; negative regulation of NF-kappaB transcription factor activity; negative regulation of protein catabolic process (ortholog); ASSOCIATED WITH irritant dermatitis (ortholog); FOUND IN IkappaB kinase complex (ortholog); INTERACTS WITH bisphenol A; linsidomine; 2,3,7,8-tetrachlorodibenzodioxine (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: probable E3 NEDD8-protein ligase; RING finger protein 35; Rnf35; tripartite motif protein 40; tripartite motif-containing protein 40; tripartite motif-containing protein 40-like
Orthologs:
Homo sapiens (human) : TRIM40 (tripartite motif containing 40)  HGNC  Alliance
Mus musculus (house mouse) : Trim40 (tripartite motif-containing 40)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trim40 (tripartite motif containing 40)
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM40 (tripartite motif containing 40)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim40 (tripartite motif containing 40)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0202,169,674 - 2,178,477 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0204,205,817 - 4,216,051 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,768,482 - 1,777,393 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1201,768,481 - 1,777,393 (+)NCBI
Celera202,385,041 - 2,394,038 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Trim40
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1359645
Created: 2005-07-29
Species: Rattus norvegicus
Last Modified: 2018-12-11
Status: ACTIVE