Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | coronary artery disease | | ISO | ANKS1A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21378990 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | coronary artery disease | | ISO | ANKS1A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21378990 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Anks1a (Rattus norvegicus - Norway rat) |
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ANKS1A (Homo sapiens - human) |
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Anks1 (Mus musculus - house mouse) |
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Anks1a (Chinchilla lanigera - long-tailed chinchilla) |
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ANKS1A (Pan paniscus - bonobo/pygmy chimpanzee) |
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ANKS1A (Canis lupus familiaris - dog) |
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Anks1a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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ANKS1A (Sus scrofa - pig) |
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ANKS1A (Chlorocebus sabaeus - green monkey) |
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Anks1a (Heterocephalus glaber - naked mole-rat) |
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Variants in Anks1a
1282 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH134403 |
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RH139847 |
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AW529418 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 41 | 12 | 6 | 8 | 6 | 65 | 32 | 37 | 11 | |||
Low | 2 | 45 | 35 | 11 | 35 | 8 | 11 | 9 | 3 | 4 | 8 | ||
Below cutoff |
RefSeq Transcripts | NM_001107613 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001414943 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006256193 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006256195 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006256196 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006256197 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008772814 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008772815 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017601643 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039098686 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279124 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279125 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279126 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279127 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010060683 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC132760 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH473988 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000044395 ⟹ ENSRNOP00000048981 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000081604 ⟹ ENSRNOP00000072237 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000107130 ⟹ ENSRNOP00000094383 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001107613 ⟹ NP_001101083 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001414943 ⟹ NP_001401872 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_006256193 ⟹ XP_006256255 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006256195 ⟹ XP_006256257 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006256196 ⟹ XP_006256258 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006256197 ⟹ XP_006256259 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039098686 ⟹ XP_038954614 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063279124 ⟹ XP_063135194 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063279125 ⟹ XP_063135195 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063279126 ⟹ XP_063135196 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063279127 ⟹ XP_063135197 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_010060683 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001101083 | (Get FASTA) | NCBI Sequence Viewer |
NP_001401872 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006256255 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006256257 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006256258 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006256259 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038954614 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135194 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135195 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135196 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135197 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL96909 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000048981 | ||
ENSRNOP00000048981.4 | |||
ENSRNOP00000072237 | |||
ENSRNOP00000072237.2 | |||
ENSRNOP00000094383 | |||
ENSRNOP00000094383.1 |
RefSeq Acc Id: | NP_001101083 ⟸ NM_001107613 |
- Peptide Label: | isoform 2 |
- UniProtKB: | A6JJP3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006256255 ⟸ XM_006256193 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A0G2K2G7 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006256257 ⟸ XM_006256195 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I6AJG9 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006256258 ⟸ XM_006256196 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | XP_006256259 ⟸ XM_006256197 |
- Peptide Label: | isoform X5 |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000072237 ⟸ ENSRNOT00000081604 |
RefSeq Acc Id: | ENSRNOP00000048981 ⟸ ENSRNOT00000044395 |
RefSeq Acc Id: | XP_038954614 ⟸ XM_039098686 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | ENSRNOP00000094383 ⟸ ENSRNOT00000107130 |
RefSeq Acc Id: | NP_001401872 ⟸ NM_001414943 |
- Peptide Label: | isoform 1 |
- UniProtKB: | D4AC12 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063135194 ⟸ XM_063279124 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_063135195 ⟸ XM_063279125 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_063135196 ⟸ XM_063279126 |
- Peptide Label: | isoform X8 |
RefSeq Acc Id: | XP_063135197 ⟸ XM_063279127 |
- Peptide Label: | isoform X9 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D4AC12-F1-model_v2 | AlphaFold | D4AC12 | 1-1125 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13701470 | ||||||||
Promoter ID: | EPDNEW_R11979 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Anks1a_1 | ||||||||
Description: | ankyrin repeat and sterile alpha motif domain containing 1A | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1309183 | AgrOrtholog |
BioCyc Gene | G2FUF-4451 | BioCyc |
Ensembl Genes | ENSRNOG00000000498 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000044395 | ENTREZGENE |
ENSRNOT00000044395.6 | UniProtKB/TrEMBL | |
ENSRNOT00000081604.2 | UniProtKB/TrEMBL | |
ENSRNOT00000107130.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.150.50 | UniProtKB/TrEMBL |
1.25.40.20 | UniProtKB/TrEMBL | |
2.30.29.30 | UniProtKB/TrEMBL | |
InterPro | ANKS1/Caskin | UniProtKB/TrEMBL |
Ankyrin_rpt | UniProtKB/TrEMBL | |
Ankyrin_rpt-contain_sf | UniProtKB/TrEMBL | |
PH_type | UniProtKB/TrEMBL | |
PTyr_interaction_dom | UniProtKB/TrEMBL | |
SAM | UniProtKB/TrEMBL | |
SAM_ANKS1_repeat1 | UniProtKB/TrEMBL | |
SAM_ANKS1_repeat2 | UniProtKB/TrEMBL | |
SAM_type | UniProtKB/TrEMBL | |
KEGG Report | rno:309639 | UniProtKB/TrEMBL |
NCBI Gene | 309639 | ENTREZGENE |
PANTHER | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 | UniProtKB/TrEMBL |
PTHR24174:SF4 | UniProtKB/TrEMBL | |
Pfam | Ank_2 | UniProtKB/TrEMBL |
PID | UniProtKB/TrEMBL | |
SAM_1 | UniProtKB/TrEMBL | |
PhenoGen | Anks1a | PhenoGen |
PRINTS | ANKYRIN | UniProtKB/TrEMBL |
PROSITE | ANK_REP_REGION | UniProtKB/TrEMBL |
ANK_REPEAT | UniProtKB/TrEMBL | |
PID | UniProtKB/TrEMBL | |
SAM_DOMAIN | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000000498 | RatGTEx |
SMART | ANK | UniProtKB/TrEMBL |
PTB | UniProtKB/TrEMBL | |
SAM | UniProtKB/TrEMBL | |
Superfamily-SCOP | ANK | UniProtKB/TrEMBL |
PH domain-like | UniProtKB/TrEMBL | |
SAM_homology | UniProtKB/TrEMBL | |
UniProt | A0A0G2K2G7 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6AJG9 | ENTREZGENE, UniProtKB/TrEMBL | |
A6JJP3 | ENTREZGENE, UniProtKB/TrEMBL | |
D4AC12 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-09-26 | Anks1a | ankyrin repeat and sterile alpha motif domain containing 1A | Anks1 | ankyrin repeat and SAM domain containing 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | Anks1 | ankyrin repeat and SAM domain containing 1 | Anks1_predicted | ankyrin repeat and SAM domain containing 1 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Anks1_predicted | ankyrin repeat and SAM domain containing 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |