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Gene: Brpf3 (bromodomain and PHD finger containing, 3) Rattus norvegicus

Analyze

Symbol:

Brpf3

Name:

bromodomain and PHD finger containing, 3

RGD ID:

1306868

Description:

Predicted to enable zinc ion binding activity. Predicted to contribute to histone acetyltransferase activity. Predicted to be involved in positive regulation of DNA replication and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of MOZ/MORF histone acetyltransferase complex. Orthologous to human BRPF3 (bromodomain and PHD finger containing 3); INTERACTS WITH acetamide; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

bromodomain and PHD finger-containing protein 3; LOC309647

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	6,866,378 - 6,904,456 (+)	NCBI		GRCr8
mRatBN7.2	20	6,864,684 - 6,902,760 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	6,865,985 - 6,902,690 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	7,582,306 - 7,612,192 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	6,944,161 - 6,974,050 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	7,425,707 - 7,455,600 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	6,047,800 - 6,086,099 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	6,049,286 - 6,086,099 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	8,301,702 - 8,339,497 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	7,090,877 - 7,121,564 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	7,086,214 - 7,122,618 (+)	NCBI
Celera	20	8,424,988 - 8,454,924 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

proteasome-associated autoinflammatory syndrome 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2-butoxyethanol (ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrolein (ISO)

acrylamide (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

DDE (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

glycidyl methacrylate (ISO)

lead(0) (ISO)

methyl methanesulfonate (ISO)

N,N-diethyl-m-toluamide (EXP)

ozone (ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

potassium chromate (ISO)

propanal (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA)

positive regulation of DNA replication (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

histone acetyltransferase complex (IEA,ISO)

MOZ/MORF histone acetyltransferase complex (IBA,IEA,ISO)

nucleus (IEA,ISO)

Molecular Function

histone H3K14 acetyltransferase activity (IEA,ISO)

histone H4K12 acetyltransferase activity (IEA,ISO)

histone H4K5 acetyltransferase activity (IEA,ISO)

histone H4K8 acetyltransferase activity (IEA,ISO)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16387653	PMID:18794358	PMID:26620551

Genomics

Comparative Map Data

Brpf3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	6,866,378 - 6,904,456 (+)	NCBI		GRCr8
mRatBN7.2	20	6,864,684 - 6,902,760 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	6,865,985 - 6,902,690 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	7,582,306 - 7,612,192 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	6,944,161 - 6,974,050 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	7,425,707 - 7,455,600 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	6,047,800 - 6,086,099 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	6,049,286 - 6,086,099 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	8,301,702 - 8,339,497 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	7,090,877 - 7,121,564 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	7,086,214 - 7,122,618 (+)	NCBI
Celera	20	8,424,988 - 8,454,924 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

BRPF3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	36,196,744 - 36,232,790 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	36,196,744 - 36,232,790 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	36,164,521 - 36,200,567 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	36,272,528 - 36,308,545 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	36,272,527 - 36,308,541	NCBI
Celera	6	37,719,088 - 37,755,105 (+)	NCBI		Celera
Cytogenetic Map	6	p21.31	NCBI
HuRef	6	35,884,145 - 35,920,113 (+)	NCBI		HuRef
CHM1_1	6	36,166,317 - 36,202,330 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	36,017,037 - 36,053,081 (+)	NCBI		T2T-CHM13v2.0

Brpf3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	29,020,088 - 29,057,763 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	29,020,064 - 29,058,923 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	28,801,126 - 28,838,789 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	28,801,090 - 28,839,949 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	28,938,071 - 28,975,734 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	28,528,715 - 28,566,378 (+)	NCBI		MGSCv36	mm8
Celera	17	29,360,452 - 29,393,360 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	15.03	NCBI

Brpf3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	3,951,160 - 3,985,338 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	3,951,160 - 3,985,133 (+)	NCBI	ChiLan1.0	ChiLan1.0

BRPF3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	50,661,710 - 50,697,629 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	46,531,510 - 46,567,433 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	35,755,305 - 35,791,304 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	36,956,841 - 36,992,113 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	36,959,709 - 36,989,933 (+)	Ensembl	panpan1.1		panPan2

BRPF3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	5,315,228 - 5,346,328 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	5,310,617 - 5,350,055 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	5,331,493 - 5,366,230 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	5,659,469 - 5,694,224 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	5,662,630 - 5,694,224 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	5,314,136 - 5,348,838 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	5,393,160 - 5,427,851 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	5,493,161 - 5,527,895 (+)	NCBI		UU_Cfam_GSD_1.0

Brpf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	40,802,400 - 40,833,409 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	23,126,607 - 23,157,876 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	23,126,821 - 23,157,838 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BRPF3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	31,926,308 - 31,966,001 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	31,926,313 - 31,966,006 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	36,856,521 - 36,865,837 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BRPF3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	35,891,139 - 35,926,621 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	35,891,141 - 35,923,084 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	36,151,210 - 36,186,729 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Brpf3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	21,431,574 - 21,462,051 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	21,431,574 - 21,466,158 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Brpf3
168 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	78
Interacting mature miRNAs:	80
Transcripts:	ENSRNOT00000042143
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26123605	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	4606607	17617956	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3621649	10078919	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
1300152	Bp195	Blood pressure QTL 195	3.46		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	3621649	9243559	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	4606607	17617956	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	6691706	17489458	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000042143 ⟹ ENSRNOP00000041680

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	6,870,888 - 6,902,690 (+)	Ensembl
Rnor_6.0 Ensembl	20	6,049,286 - 6,086,099 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092337

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	6,070,807 - 6,078,843 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092369

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	6,070,807 - 6,083,142 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	6,887,498 - 6,899,899 (+)	Ensembl
Rnor_6.0 Ensembl	20	6,070,807 - 6,083,933 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092566 ⟹ ENSRNOP00000075891

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	6,865,985 - 6,872,342 (+)	Ensembl
Rnor_6.0 Ensembl	20	6,049,295 - 6,055,652 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092629 ⟹ ENSRNOP00000075843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	6,870,888 - 6,900,816 (+)	Ensembl
Rnor_6.0 Ensembl	20	6,054,199 - 6,084,771 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097855 ⟹ ENSRNOP00000094497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	6,870,888 - 6,900,816 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109033 ⟹ ENSRNOP00000079349

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	6,870,888 - 6,900,816 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112955 ⟹ ENSRNOP00000088316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	6,887,573 - 6,902,690 (+)	Ensembl

RefSeq Acc Id:

NM_001107615 ⟹ NP_001101085

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,872,585 - 6,902,512 (+)	NCBI
mRatBN7.2	20	6,870,888 - 6,900,816 (+)	NCBI
Rnor_6.0	20	6,054,198 - 6,084,155 (+)	NCBI
Rnor_5.0	20	8,301,702 - 8,339,497 (+)	NCBI
RGSC_v3.4	20	7,090,877 - 7,121,564 (+)	RGD
Celera	20	8,424,988 - 8,454,924 (+)	RGD

Sequence:

show sequence

GGCCTGTCTTCGTCCTTTCCAGTTGCCATGAGGAAGCCTCGCCGAAAGTCACGGCAGAATGCCG
AGGGCCGGAGATCCCCATCCCCATACAGTCTTAAATGCTCACCCACACGGGAGACCTTGACCTA
CGCCCAAGCCCAGAGGATCGTGGAAGTCGATATGGACGGCCGCCTGCACCGTATCAGCATTTAT
GACCCGCTTAAGATCATCACCGAGGATGAGCTGACGGCTCAGGATATCACCGAATGCAACAGCA
ACAAGGAGAACAGCGAGCAGCCCCAGTTCCCCGCCAAGTCCAAGAAACCCTCATCCAAGGGCAA
GAAGAAGGAGTCCTGTTCCAAGCATGCACCCGGCACGTCCTTCCACCTCCCGCAGCCCAGCTTT
CGAGTGGTGGACACAGGGAGCCAGCCGGAAGCACCCCCATTGCCCGCTGCTTACTACCGCTACA
TCGAGAAGCCTCCGGAAGATCTGGACGCAGAGGTGGAGTATGACATGGACGAGGAGGACATGGC
CTGGCTCGACATGGTCAATGAGAAGCGCCGAGCAGACGGGCACAGCTCCGTGTCGGCGGACACC
TTCGAGCTGCTGGTGGACCGGCTTGAGAAGGAGTCGTACCTGGAGAGCCGCAGCAGTGGGGCTC
AGCAGTCACTGATCGACGAGGACGCCTTCTGCTGCGTGTGCCTGGATGATGAGTGCCACAACAG
CAACGTCATCCTCTTCTGCGACATCTGCAACTTAGCTGTGCACCAGGAGTGCTACGGCGTTCCC
TACATCCCAGAGGGCCAGTGGCTCTGCCGCTGCTGCCTGCAGTCTCCCTCTCGGCCTGTGGATT
GTGTCCTGTGCCCCAATAAAGGGGGGGCCTTCAAACAGACCAGTGATGGCCACTGGGCCCATGT
AGTCTGCGCCATCTGGATCCCTGAAGTCTGCTTCGCCAATACGGTGTTCCTGGAGCCCATTGAG
GGCATCGACAGCATCCCGCCTGCCCGCTGGAAGCTAACCTGCTACATCTGCAAGCAGAAGGGGC
TGGGCGCGGCCATCCAGTGCCATAAAGTGAACTGCTACACCGCCTTCCACGTGACGTGCGCGCA
GCGGGCCGGGCTGTTCATGAAGATTGAACCCATGAGAGAAACCAGTCTCAATGGCACCATCTTT
ACCGTGCGCAAGACCGCCTACTGCGAGGCCCACTCCCCAAGTGTTGCCACTGCCAGGAGGAAGG
GTGACTCACCGAGGAGCCTCAGTGAAGTCGGGGATGAGGATGGGCTGAAAGAGGGTGGTGGGGA
GGAGGAACAGGAAGAAGGAGAGGAGGAGGGCCAGGAAGGCCAAGGTGGGGTGGGCAGCCCCCTC
AAGGGGGTGTCCAAGAAGAGTAAGATGACTTCAAAGCAGAAGATCAAGAAGGAGCTGGAGGAAG
CTGGCCGAGAGACACCCTCCATCACTGTCCCCATGGTCACTGTCCCACAGATACCCTCTTACAG
GTTGAACAAGATCTGTAGTGGTCTCTCCTTTCAGAGGAAAAACCAGTTCATGCAGCGGCTTCAC
AACTACTGGCTATTGAAGCGGCAGGCTCGGAACGGTGTCCCTCTCATCAGGCGCCTGCACTCCC
ACTTACAGTCGCAGAGAAATGCTGAACAGCGGGAGCATGATGAGAAGACGAGCGCGGTGAAGGA
AGAGCTGAAATACTGGCAGAAGCTCCGGCATGACCTGGAGCGGGCGCGGCTGCTGATCGAGCTC
ATCCGCAAAAGGGAGAAGCTGAAGCGGGAGCAGGTCAAAGTGCAGCAGGCAGCCATGGAGCTGG
AGCTGATGCCGTTCACCGTTCTGCTGAGGACGACTCTGGACCTGCTGCAGGAGAAGGACCCTGC
ACACATCTTCGCTGAACCCGTCAGCCTCAGTGAGGTTCCAGATTACCTGGAATTCATATCCAAG
CCAATGGATTTTTCTACTATGAGGCGGAAGCTGGAATCTCACCTGTACCACACCTTGGAGGAGT
TTGAGGAGGACTTTAACCTTATAGTTACCAACTGCATGAAGTATAATGCTAAAGACACAATTTT
CCACCGAGCAGCTGTCCGCCTGCGGGACCTGGGAGGGGCCATCCTGCGGCATGCCCGGCGGCAG
GCAGAGAACATCGGCTATGATCCCGAGAGGGGCACCCACTTGCCCGAGTCACCCAAATTGGAAG
ACTTTTACCGATTCTCCTGGGAGGATGTGGACAACATCCTTATCCCAGAGAACCGGGCCCATCT
CAGCCCAGAGGCACAGCTGAAGGAACTGCTGGAGAAACTGGATCTGGTGAGCGCCATGCGATCC
AGCGGGGCCCGCACCCGTCGTGTCCGCATGCTGCGCCGGGAGATCAATGCCCTTCGGCAAAAGT
TAGCACAGCCACCGCCACCACAGCTCCTGTCACTGACCAAGACTGTGCCCAACGGGGAGCTGCC
AGCAGGATCTCGGGGGGATGCAGCTGGGCTGGAGCAGACCCTGCAGGAGGAGCCAGAAGATGAA
GGGGACCGAGATGATTCACAGTTGCCTGCCCCACCAACTTTGGAGCCTACCGGGCCTGCGCCTT
CCTTGTCAGAGCAGGAATCCCCTCCTGACCCCCCAACCCTGAAACCCATCAGCGACAGCAAGCC
CTCAGGCCGCCTCCCAAAGCCCCGGAAGGTGGACGATGAAGAGCTGTTGGGAGATTCAGCACTG
CAGCTGGGGAGTGAGCCCTTACAATGCTTGCTTAGTGACAATGGCGCTGACAGACTGCCTCTCA
CAAACCCTGACAGCCCTCCCGGCACCCCCCTCGGCAATGTGGGCCGCCGAACGTCAGTCCTCTT
CAAGAAGGCCAAGAATGGAGTTAAGCTACAGAGGGGTCCAGATGGGACCCTGGAGAACGGCGAG
GACGCTCCTGCTTCTCCAGCCAGCATGGAGGAGGAACACTGTTCCCGGAAGAGGCCACGGAGCC
AGAGCTGTAGTGACAGTGAAGGGGAGAGATCCCCTCAGCAGGAGGAAGAGACAGGCGTGACTAA
CGGCTTTGGAAAACACACCGAAAGCGGGTCTGACTCGGAATGTAGTTTGGGTCTCAGTGGAGGA
CTGGCGTTTGAAGCTGGCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAGCCCTGT
CTCGAGTGCCCTTCCTGGAAGGTGTGAATGGAGACTCTGACCACAGTGGCTCAGGCAGAAGCCT
CCTGATGCCCTTTGAAGACCGCGGAGACCTGGAGCCCCTGGAGCTGGTGTGGGCCAAGTGCCGA
GGCTACCCCTCCTACCCTGCCTTGATCATCGATCCCAAGATGCCCCGGGAGGGCCTCCTACACA
ACGGTGTCCCCATCCCTGTCCCTCCACTGGACGTGCTGAGGCTGGGGGAGCAGAAGCAGGCAGA
GGCTGGAGAGAGGCTCTTTCTTGTCCTCTTCTTTGATAACAAGAGGACCTGGCAGTGGCTTCCA
AGGGACAAAGTTCTGCCCCTGGGTGTAGAGGACACTGTAGACAAGCTCAAGATGCTCGAAGGCC
GCAAGACCAGCATCCGGAAGTCAGTACAAGTGGCCTATGACCGCGCTATGATCCACCTGAGCCG
CGTCCGTGGGTCCCACTCCTTCGTCACTTCTAGCTACCTGTAAGAGTGGAGCTGGGCCTGTGTC
TGCCTTCTGTGCCTCTCTCTGGCCCCGAG

hide sequence

RefSeq Acc Id:

XM_006256129 ⟹ XP_006256191

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,867,834 - 6,904,456 (+)	NCBI
mRatBN7.2	20	6,866,101 - 6,902,760 (+)	NCBI
Rnor_6.0	20	6,049,367 - 6,086,099 (+)	NCBI
Rnor_5.0	20	8,301,702 - 8,339,497 (+)	NCBI

Sequence:

show sequence

GAGAGAGCGGGGGCGGCGGGGGCCGACTGGGAGCGAGCGCTGCGTGCGATGGGGCAGCCGGGGC
GCACAGGGGTGTCCCGATGGGGCGCGGGGGTGACGCGCGAGCTCTCCCCTGGAGCGAGGGCGGC
GACGAGGCCAGGGAAAGCGCGCGAGAGGGAGCTGCAAAGCGCGGACCCCCTCCCGCACCCGCCA
TCTTGTTTCTCCCCGGTCCTGGCAGCGGAGCGGCTAAGCCCCGCCCTCCCCGTGCTCTCCTATT
GGCTAGACCCGAGCAGAGTTCCGCCCTCAAGGGGCCGCCCTTGGCGCACGGGTTCCCCCTTGAC
GGGCAGGCCGGGCGGCCAATAAGTGCTCGCATCTCTGCGTCCCTCCCCTCCTCACCCTCCCCCT
CGTTCGCTGGCGCTCGCTTTCCCTGTGAGAAAGGGTCGGACTTCGCGTCTGTCTGTGGCCTGTC
TTCGTCCTTTCCAGTTGCCATGAGGAAGCCTCGCCGAAAGTCACGGCAGAATGCCGAGGGCCGG
AGATCCCCATCCCCATACAGTCTTAAATGCTCACCCACACGGGAGACCTTGACCTACGCCCAAG
CCCAGAGGATCGTGGAAGTCGATATGGACGGCCGCCTGCACCGTATCAGCATTTATGACCCGCT
TAAGATCATCACCGAGGATGAGCTGACGGCTCAGGATATCACCGAATGCAACAGCAACAAGGAG
AACAGCGAGCAGCCCCAGTTCCCCGCCAAGTCCAAGAAACCCTCATCCAAGGGCAAGAAGAAGG
AGTCCTGTTCCAAGCATGCACCCGGCACGTCCTTCCACCTCCCGCAGCCCAGCTTTCGAGTGGT
GGACACAGGGAGCCAGCCGGAAGCACCCCCATTGCCCGCTGCTTACTACCGCTACATCGAGAAG
CCTCCGGAAGATCTGGACGCAGAGGTGGAGTATGACATGGACGAGGAGGACATGGCCTGGCTCG
ACATGGTCAATGAGAAGCGCCGAGCAGACGGGCACAGCTCCGTGTCGGCGGACACCTTCGAGCT
GCTGGTGGACCGGCTTGAGAAGGAGTCGTACCTGGAGAGCCGCAGCAGTGGGGCTCAGCAGTCA
CTGATCGACGAGGACGCCTTCTGCTGCGTGTGCCTGGATGATGAGTGCCACAACAGCAACGTCA
TCCTCTTCTGCGACATCTGCAACTTAGCTGTGCACCAGGAGTGCTACGGCGTTCCCTACATCCC
AGAGGGCCAGTGGCTCTGCCGCTGCTGCCTGCAGTCTCCCTCTCGGCCTGTGGATTGTGTCCTG
TGCCCCAATAAAGGGGGGGCCTTCAAACAGACCAGTGATGGCCACTGGGCCCATGTAGTCTGCG
CCATCTGGATCCCTGAAGTCTGCTTCGCCAATACGGTGTTCCTGGAGCCCATTGAGGGCATCGA
CAGCATCCCGCCTGCCCGCTGGAAGCTAACCTGCTACATCTGCAAGCAGAAGGGGCTGGGCGCG
GCCATCCAGTGCCATAAAGTGAACTGCTACACCGCCTTCCACGTGACGTGCGCGCAGCGGGCCG
GGCTGTTCATGAAGATTGAACCCATGAGAGAAACCAGTCTCAATGGCACCATCTTTACCGTGCG
CAAGACCGCCTACTGCGAGGCCCACTCCCCAAGTGTTGCCACTGCCAGGAGGAAGGGTGACTCA
CCGAGGAGCCTCAGTGAAGTCGGGGATGAGGATGGGCTGAAAGAGGGTGGTGGGGAGGAGGAAC
AGGAAGAAGGAGAGGAGGAGGGCCAGGAAGGCCAAGGTGGGGTGGGCAGCCCCCTCAAGGGGGT
GTCCAAGAAGAGTAAGATGACTTCAAAGCAGAAGATCAAGAAGGAGCTGGAGGAAGCTGGCCGA
GAGACACCCTCCATCACTGTCCCCATGGTCACTGTCCCACAGATACCCTCTTACAGGTTGAACA
AGATCTGTAGTGGTCTCTCCTTTCAGAGGAAAAACCAGTTCATGCAGCGGCTTCACAACTACTG
GCTATTGAAGCGGCAGGCTCGGAACGGTGTCCCTCTCATCAGGCGCCTGCACTCCCACTTACAG
TCGCAGAGAAATGCTGAACAGCGGGAGCATGATGAGAAGACGAGCGCGGTGAAGGAAGAGCTGA
AATACTGGCAGAAGCTCCGGCATGACCTGGAGCGGGCGCGGCTGCTGATCGAGCTCATCCGCAA
AAGGGAGAAGCTGAAGCGGGAGCAGGTCAAAGTGCAGCAGGCAGCCATGGAGCTGGAGCTGATG
CCGTTCACCGTTCTGCTGAGGACGACTCTGGACCTGCTGCAGGAGAAGGACCCTGCACACATCT
TCGCTGAACCCGTCAGCCTCAGTGAGGTTCCAGATTACCTGGAATTCATATCCAAGCCAATGGA
TTTTTCTACTATGAGGCGGAAGCTGGAATCTCACCTGTACCACACCTTGGAGGAGTTTGAGGAG
GACTTTAACCTTATAGTTACCAACTGCATGAAGTATAATGCTAAAGACACAATTTTCCACCGAG
CAGCTGTCCGCCTGCGGGACCTGGGAGGGGCCATCCTGCGGCATGCCCGGCGGCAGGCAGAGAA
CATCGGCTATGATCCCGAGAGGGGCACCCACTTGCCCGAGTCACCCAAATTGGAAGACTTTTAC
CGATTCTCCTGGGAGGATGTGGACAACATCCTTATCCCAGAGAACCGGGCCCATCTCAGCCCAG
AGGCACAGCTGAAGGAACTGCTGGAGAAACTGGATCTGGTGAGCGCCATGCGATCCAGCGGGGC
CCGCACCCGTCGTGTCCGCATGCTGCGCCGGGAGATCAATGCCCTTCGGCAAAAGTTAGCACAG
CCACCGCCACCACAGCTCCTGTCACTGACCAAGACTGTGCCCAACGGGGAGCTGCCAGCAGGAT
CTCGGGGGGATGCAGCTGGGCTGGAGCAGACCCTGCAGGAGGAGCCAGAAGATGAAGGGGACCG
AGATGATTCACAGTTGCCTGCCCCACCAACTTTGGAGCCTACCGGGCCTGCGCCTTCCTTGTCA
GAGCAGGAATCCCCTCCTGACCCCCCAACCCTGAAACCCATCAGCGACAGCAAGCCCTCAGGCC
GCCTCCCAAAGCCCCGGAAGGTGGACGATGAAGAGCTGTTGGGAGATTCAGCACTGCAGCTGGG
GAGTGAGCCCTTACAATGCTTGCTTAGTGACAATGGCGCTGACAGACTGCCTCTCACAAACCCT
GACAGCCCTCCCGGCACCCCCCTCGGCAATGTGGGCCGCCGAACGTCAGTCCTCTTCAAGAAGG
CCAAGAATGGAGTTAAGCTACAGAGGGGTCCAGATGGGACCCTGGAGAACGGCGAGGACGCTCC
TGCTTCTCCAGCCAGCATGGAGGAGGAACACTGTTCCCGGAAGAGGCCACGGAGCCAGAGCTGT
AGTGACAGTGAAGGGGAGAGATCCCCTCAGCAGGAGGAAGAGACAGGCGTGACTAACGGCTTTG
GAAAACACACCGAAAGCGGGTCTGACTCGGAATGTAGTTTGGGTCTCAGTGGAGGACTGGCGTT
TGAAGCTGGCAGTGGCCTGACGCCTCCCAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGAGTG
CCCTTCCTGGAAGGTGTGAATGGAGACTCTGACCACAGTGGCTCAGGCAGAAGCCTCCTGATGC
CCTTTGAAGACCGCGGAGACCTGGAGCCCCTGGAGCTGGTGTGGGCCAAGTGCCGAGGCTACCC
CTCCTACCCTGCCTTGATCATCGATCCCAAGATGCCCCGGGAGGGCCTCCTACACAACGGTGTC
CCCATCCCTGTCCCTCCACTGGACGTGCTGAGGCTGGGGGAGCAGAAGCAGGCAGAGGCTGGAG
AGAGGCTCTTTCTTGTCCTCTTCTTTGATAACAAGAGGACCTGGCAGTGGCTTCCAAGGGACAA
AGTTCTGCCCCTGGGTGTAGAGGACACTGTAGACAAGCTCAAGATGCTCGAAGGCCGCAAGACC
AGCATCCGGAAGTCAGTACAAGTGGCCTATGACCGCGCTATGATCCACCTGAGCCGCGTCCGTG
GGTCCCACTCCTTCGTCACTTCTAGCTACCTGTAAGAGTGGAGCTGGGCCTGTGTCTGCCTTCT
GTGCCTCTCTCTGGCCCCGAGGCACGAGAAGCCTCTTCTACCCCTGCCATGTTATGGCTGGCAG
TTTCGTTCCAATGGCAGGCCCTGACTGGACTGGGTCTCCAAGGGCAAGGCCCAATATTGACCAA
TCACGTGGTTCCCCTGGAGGGCTGCTGTGTGCCAAAAACTCCCACCCGAGGCCCCTGGGGATGT
TCCACTGAAGAACCACTCAGAAGTAGAAACAGCTGAGATTTAGCCAGCCAGGGAGATAGGCCTG
GCGCACCAGGCAAGAGGGCCTAGGCTACTTTTCTGGGCCCAGCTGGCTCCCTCCATGCCTCTCC
CACCTAACCATACCTCAGGGCAGGCAAGGTTCTGACACTGATCCCAGAGATGTGCCAGGGTCCC
TCGGGAACCCTCAGAGCTCCCTCCCCCCACATCGCCTGTGCTCGCACCCCCTGTCTCCCTCACC
TAGCCCAGGCTCTCCCTCCGGGCATTGCTCTCCTCTCTCCCTTGTGCCAAACTGACAGCAACAT
CACCAAATGGATCTTTTTCTTTGATGCCCATTTCCTTCCTGCCAGCTGCTACATTGGATGGATG
TCTGCCAGGCGCTTGAGCCCCAGGTAGACGCTCTCCCACTTGTAAGGACCCTTCCCCACACCCA
CAGACGCCCACTTCTGCCACCGACAGGCCAAGCCCAGCTGCATGCACTCATCCTGTGGATGGAG
CGGGCGTCCTGCCCTTCCCCTCGCTCTGAGGAGTGCCGAGGACGACCCTTGTCCACGCACAGGC
TGGATGGAGATGGGGTGGCACACCATGCCGACGCCCCTCCTCCCCTCTCGTGGGCTTTTCTCTT
CCTGCAGCAGCCTTAAGCCTTACTGCATCAGCACGTCACCGCAGGCGGCATGGCGCAAGGCGGC
TGCCCTCCAGCACCCTCCCCCTGTTTTGCTGCTCCTCCCTCCCAGAGCAGGGAGCACAGCTTTT
TTCTTTCATCCCCTGCCTTCAACCTCTTCTCCACCTTCACCTCCTCAACTTCTCCCCTCAACAA
GGAAGGAAAAAAAAAAAAAACTGTGAATGAGGAAAGCTGACTGACCAAGCAGCTCGCGGGTCTT
GGAGGCTCTGCTCTTGACCTTTCTTTCACCTCTTCAGCACCAAAGCCGCGGCCGGTTTGCAGAC
CGCCCATTGCCATTTGATTTCTACCTTGCTGTTCTTTTTAATTGTTTTACATTTTTTCATGGGG
GAGTTTTGGGCAAAGACGAAGTTCCTGGGGAGGTCACTGCCATTTTTACATTCTCAAACTTTGT
AAAAATTACAACCAACCACCAACTTCTTACACATTTGGGACACGAGCCAGAGTTTAAAAGGGAA
CCAACAAAGCTCACCGAGAGGGCCAGATTCTGTCCAGTGAACAGCGCAGCAACAGCGGACAGGA
CGTGGTGTACATAACTGTAAGATACCGCCATGAGTTACCGCCGCGAGTTACTCAGACGCTCTCC
GTTACCGGAACCCGCCATTCATTGTGCAGCCATGCAGTGCAGTCTAGTCGAAGGAGCCGCCGCG
CCCCTCTCTCTCCCCAGGTAGCTGGTCAGCCGTGGACTCTGACCAAACCTCATCCAAACCTATG
TGAAGATCTCGGGGCTTCCTCCCTCTCTGTCCCCTTCCCCCACACTCTCTCCTCCATTTTTCAG
CCTCTGAATCCTTCCCACTCTCCGAGTCCCACTTAAAAACTGCTCTTTAGGACAGGATGCGGCT
CAGATCCTGCTGAGGCTTGGGGCCTCATGTCTCTGTCTGGTCTGCTGTGAAGCACACGATGCTC
TATTTATTGTAGAAAGTGACTTTATTTGCCTTCTAGAATTGTTTATAACAGATGGTTATAAGAG
AGGTAATAAACAGAAAAACCTATGCCTGTAAAGAAGACAAGAGTTAATTTTACCTACATAATAT
GACGTCTTATTTTCTCTCTGAGAAATAAATGTTCTATGGGCAGTG

hide sequence

RefSeq Acc Id:

XM_006256132 ⟹ XP_006256194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,866,378 - 6,904,456 (+)	NCBI
mRatBN7.2	20	6,864,684 - 6,902,760 (+)	NCBI
Rnor_6.0	20	6,047,800 - 6,086,099 (+)	NCBI
Rnor_5.0	20	8,301,702 - 8,339,497 (+)	NCBI

Sequence:

show sequence

TAAAAATTGGTTATTTTTTGCAGTACGTTATTACCATCTATCAAGAAAGCACTGTAAGGAAACC
TAACTTCCTTGCTTCACTCAACTGGTAAATTCTTAACTATTTACTTAGGATGCCGATGTAAATA
AAAAACACAAAAGTTTGGACCCTGAGGGTTTATTTTCTATCCTTTCGACTGTTGTTAACACTCA
GGTCCTGGGTACCAGAGCCAATCGAGCAATCGAAAGTCTCACCAGCCGTTCGGGCAGAGGAAAC
GCTTTCAAAATATGTCATTCATCTTCATCCTTGATGGCATACATCCTTTATATGCATCATTAAG
GACTGGTGCTTAAGATCTCAGTCTCGAGAGGCCTGTCTTCGTCCTTTCCAGTTGCCATGAGGAA
GCCTCGCCGAAAGTCACGGCAGAATGCCGAGGGCCGGAGATCCCCATCCCCATACAGTCTTAAA
TGCTCACCCACACGGGAGACCTTGACCTACGCCCAAGCCCAGAGGATCGTGGAAGTCGATATGG
ACGGCCGCCTGCACCGTATCAGCATTTATGACCCGCTTAAGATCATCACCGAGGATGAGCTGAC
GGCTCAGGATATCACCGAATGCAACAGCAACAAGGAGAACAGCGAGCAGCCCCAGTTCCCCGCC
AAGTCCAAGAAACCCTCATCCAAGGGCAAGAAGAAGGAGTCCTGTTCCAAGCATGCACCCGGCA
CGTCCTTCCACCTCCCGCAGCCCAGCTTTCGAGTGGTGGACACAGGGAGCCAGCCGGAAGCACC
CCCATTGCCCGCTGCTTACTACCGCTACATCGAGAAGCCTCCGGAAGATCTGGACGCAGAGGTG
GAGTATGACATGGACGAGGAGGACATGGCCTGGCTCGACATGGTCAATGAGAAGCGCCGAGCAG
ACGGGCACAGCTCCGTGTCGGCGGACACCTTCGAGCTGCTGGTGGACCGGCTTGAGAAGGAGTC
GTACCTGGAGAGCCGCAGCAGTGGGGCTCAGCAGTCACTGATCGACGAGGACGCCTTCTGCTGC
GTGTGCCTGGATGATGAGTGCCACAACAGCAACGTCATCCTCTTCTGCGACATCTGCAACTTAG
CTGTGCACCAGGAGTGCTACGGCGTTCCCTACATCCCAGAGGGCCAGTGGCTCTGCCGCTGCTG
CCTGCAGTCTCCCTCTCGGCCTGTGGATTGTGTCCTGTGCCCCAATAAAGGGGGGGCCTTCAAA
CAGACCAGTGATGGCCACTGGGCCCATGTAGTCTGCGCCATCTGGATCCCTGAAGTCTGCTTCG
CCAATACGGTGTTCCTGGAGCCCATTGAGGGCATCGACAGCATCCCGCCTGCCCGCTGGAAGCT
AACCTGCTACATCTGCAAGCAGAAGGGGCTGGGCGCGGCCATCCAGTGCCATAAAGTGAACTGC
TACACCGCCTTCCACGTGACGTGCGCGCAGCGGGCCGGGCTGTTCATGAAGATTGAACCCATGA
GAGAAACCAGTCTCAATGGCACCATCTTTACCGTGCGCAAGACCGCCTACTGCGAGGCCCACTC
CCCAAGTGTTGCCACTGCCAGGAGGAAGGGTGACTCACCGAGGAGCCTCAGTGAAGTCGGGGAT
GAGGATGGGCTGAAAGAGGGTGGTGGGGAGGAGGAACAGGAAGAAGGAGAGGAGGAGGGCCAGG
AAGGCCAAGGTGGGGTGGGCAGCCCCCTCAAGGGGGTGTCCAAGAAGAGTAAGATGACTTCAAA
GCAGAAGATCAAGAAGGAGCTGGAGGAAGCTGGCCGAGAGACACCCTCCATCACTGTCCCCATG
GTCACTGTCCCACAGATACCCTCTTACAGGTTGAACAAGATCTGTAGTGGTCTCTCCTTTCAGA
GGAAAAACCAGTTCATGCAGCGGCTTCACAACTACTGGCTATTGAAGCGGCAGGCTCGGAACGG
TGTCCCTCTCATCAGGCGCCTGCACTCCCACTTACAGTCGCAGAGAAATGCTGAACAGCGGGAG
CATGATGAGAAGACGAGCGCGGTGAAGGAAGAGCTGAAATACTGGCAGAAGCTCCGGCATGACC
TGGAGCGGGCGCGGCTGCTGATCGAGCTCATCCGCAAAAGGGAGAAGCTGAAGCGGGAGCAGGT
CAAAGTGCAGCAGGCAGCCATGGAGCTGGAGCTGATGCCGTTCACCGTTCTGCTGAGGACGACT
CTGGACCTGCTGCAGGAGAAGGACCCTGCACACATCTTCGCTGAACCCGTCAGCCTCAGTGAGG
TTCCAGATTACCTGGAATTCATATCCAAGCCAATGGATTTTTCTACTATGAGGCGGAAGCTGGA
ATCTCACCTGTACCACACCTTGGAGGAGTTTGAGGAGGACTTTAACCTTATAGTTACCAACTGC
ATGAAGTATAATGCTAAAGACACAATTTTCCACCGAGCAGCTGTCCGCCTGCGGGACCTGGGAG
GGGCCATCCTGCGGCATGCCCGGCGGCAGGCAGAGAACATCGGCTATGATCCCGAGAGGGGCAC
CCACTTGCCCGAGTCACCCAAATTGGAAGACTTTTACCGATTCTCCTGGGAGGATGTGGACAAC
ATCCTTATCCCAGAGAACCGGGCCCATCTCAGCCCAGAGGCACAGCTGAAGGAACTGCTGGAGA
AACTGGATCTGGTGAGCGCCATGCGATCCAGCGGGGCCCGCACCCGTCGTGTCCGCATGCTGCG
CCGGGAGATCAATGCCCTTCGGCAAAAGTTAGCACAGCCACCGCCACCACAGCTCCTGTCACTG
ACCAAGACTGTGCCCAACGGGGAGCTGCCAGCAGGATCTCGGGGGGATGCAGCTGGGCTGGAGC
AGACCCTGCAGGAGGAGCCAGAAGATGAAGGGGACCGAGATGATTCACAGTTGCCTGCCCCACC
AACTTTGGAGCCTACCGGGCCTGCGCCTTCCTTGTCAGAGCAGGAATCCCCTCCTGACCCCCCA
ACCCTGAAACCCATCAGCGACAGCAAGCCCTCAGGCCGCCTCCCAAAGCCCCGGAAGGTGGACG
ATGAAGAGCTGTTGGGAGATTCAGCACTGCAGCTGGGGAGTGAGCCCTTACAATGCTTGCTTAG
TGACAATGGCGCTGACAGACTGCCTCTCACAAACCCTGACAGCCCTCCCGGCACCCCCCTCGGC
AATGTGGGCCGCCGAACGTCAGTCCTCTTCAAGAAGGCCAAGAATGGAGTTAAGCTACAGAGGG
GTCCAGATGGGACCCTGGAGAACGGCGAGGACGCTCCTGCTTCTCCAGCCAGCATGGAGGAGGA
ACACTGTTCCCGGAAGAGGCCACGGAGCCAGAGCTGTAGTGACAGTGAAGGGGAGAGATCCCCT
CAGCAGGAGGAAGAGACAGGCGTGACTAACGGCTTTGGAAAACACACCGAAAGCGGGTCTGACT
CGGAATGTAGTTTGGGTCTCAGTGGAGGACTGGCGTTTGAAGCTGGCAGTGGCCTGACGCCTCC
CAAACGCAGCCGTGGGAAGCCAGCCCTGTCTCGAGTGCCCTTCCTGGAAGGTGTGAATGGAGAC
TCTGACCACAGTGGCTCAGGCAGAAGCCTCCTGATGCCCTTTGAAGACCGCGGAGACCTGGAGC
CCCTGGAGCTGGTGTGGGCCAAGTGCCGAGGCTACCCCTCCTACCCTGCCTTGATCATCGATCC
CAAGATGCCCCGGGAGGGCCTCCTACACAACGGTGTCCCCATCCCTGTCCCTCCACTGGACGTG
CTGAGGCTGGGGGAGCAGAAGCAGGCAGAGGCTGGAGAGAGGCTCTTTCTTGTCCTCTTCTTTG
ATAACAAGAGGACCTGGCAGTGGCTTCCAAGGGACAAAGTTCTGCCCCTGGGTGTAGAGGACAC
TGTAGACAAGCTCAAGATGCTCGAAGGCCGCAAGACCAGCATCCGGAAGTCAGTACAAGTGGCC
TATGACCGCGCTATGATCCACCTGAGCCGCGTCCGTGGGTCCCACTCCTTCGTCACTTCTAGCT
ACCTGTAAGAGTGGAGCTGGGCCTGTGTCTGCCTTCTGTGCCTCTCTCTGGCCCCGAGGCACGA
GAAGCCTCTTCTACCCCTGCCATGTTATGGCTGGCAGTTTCGTTCCAATGGCAGGCCCTGACTG
GACTGGGTCTCCAAGGGCAAGGCCCAATATTGACCAATCACGTGGTTCCCCTGGAGGGCTGCTG
TGTGCCAAAAACTCCCACCCGAGGCCCCTGGGGATGTTCCACTGAAGAACCACTCAGAAGTAGA
AACAGCTGAGATTTAGCCAGCCAGGGAGATAGGCCTGGCGCACCAGGCAAGAGGGCCTAGGCTA
CTTTTCTGGGCCCAGCTGGCTCCCTCCATGCCTCTCCCACCTAACCATACCTCAGGGCAGGCAA
GGTTCTGACACTGATCCCAGAGATGTGCCAGGGTCCCTCGGGAACCCTCAGAGCTCCCTCCCCC
CACATCGCCTGTGCTCGCACCCCCTGTCTCCCTCACCTAGCCCAGGCTCTCCCTCCGGGCATTG
CTCTCCTCTCTCCCTTGTGCCAAACTGACAGCAACATCACCAAATGGATCTTTTTCTTTGATGC
CCATTTCCTTCCTGCCAGCTGCTACATTGGATGGATGTCTGCCAGGCGCTTGAGCCCCAGGTAG
ACGCTCTCCCACTTGTAAGGACCCTTCCCCACACCCACAGACGCCCACTTCTGCCACCGACAGG
CCAAGCCCAGCTGCATGCACTCATCCTGTGGATGGAGCGGGCGTCCTGCCCTTCCCCTCGCTCT
GAGGAGTGCCGAGGACGACCCTTGTCCACGCACAGGCTGGATGGAGATGGGGTGGCACACCATG
CCGACGCCCCTCCTCCCCTCTCGTGGGCTTTTCTCTTCCTGCAGCAGCCTTAAGCCTTACTGCA
TCAGCACGTCACCGCAGGCGGCATGGCGCAAGGCGGCTGCCCTCCAGCACCCTCCCCCTGTTTT
GCTGCTCCTCCCTCCCAGAGCAGGGAGCACAGCTTTTTTCTTTCATCCCCTGCCTTCAACCTCT
TCTCCACCTTCACCTCCTCAACTTCTCCCCTCAACAAGGAAGGAAAAAAAAAAAAAACTGTGAA
TGAGGAAAGCTGACTGACCAAGCAGCTCGCGGGTCTTGGAGGCTCTGCTCTTGACCTTTCTTTC
ACCTCTTCAGCACCAAAGCCGCGGCCGGTTTGCAGACCGCCCATTGCCATTTGATTTCTACCTT
GCTGTTCTTTTTAATTGTTTTACATTTTTTCATGGGGGAGTTTTGGGCAAAGACGAAGTTCCTG
GGGAGGTCACTGCCATTTTTACATTCTCAAACTTTGTAAAAATTACAACCAACCACCAACTTCT
TACACATTTGGGACACGAGCCAGAGTTTAAAAGGGAACCAACAAAGCTCACCGAGAGGGCCAGA
TTCTGTCCAGTGAACAGCGCAGCAACAGCGGACAGGACGTGGTGTACATAACTGTAAGATACCG
CCATGAGTTACCGCCGCGAGTTACTCAGACGCTCTCCGTTACCGGAACCCGCCATTCATTGTGC
AGCCATGCAGTGCAGTCTAGTCGAAGGAGCCGCCGCGCCCCTCTCTCTCCCCAGGTAGCTGGTC
AGCCGTGGACTCTGACCAAACCTCATCCAAACCTATGTGAAGATCTCGGGGCTTCCTCCCTCTC
TGTCCCCTTCCCCCACACTCTCTCCTCCATTTTTCAGCCTCTGAATCCTTCCCACTCTCCGAGT
CCCACTTAAAAACTGCTCTTTAGGACAGGATGCGGCTCAGATCCTGCTGAGGCTTGGGGCCTCA
TGTCTCTGTCTGGTCTGCTGTGAAGCACACGATGCTCTATTTATTGTAGAAAGTGACTTTATTT
GCCTTCTAGAATTGTTTATAACAGATGGTTATAAGAGAGGTAATAAACAGAAAAACCTATGCCT
GTAAAGAAGACAAGAGTTAATTTTACCTACATAATATGACGTCTTATTTTCTCTCTGAGAAATA
AATGTTCTATGGGCAGTG

hide sequence

RefSeq Acc Id:

XM_039098703 ⟹ XP_038954631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,867,834 - 6,902,234 (+)	NCBI
mRatBN7.2	20	6,866,101 - 6,900,558 (+)	NCBI

RefSeq Acc Id:

XM_039098704 ⟹ XP_038954632

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,867,834 - 6,902,143 (+)	NCBI
mRatBN7.2	20	6,866,101 - 6,900,521 (+)	NCBI

RefSeq Acc Id:

XM_039098705 ⟹ XP_038954633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,867,834 - 6,886,801 (+)	NCBI
mRatBN7.2	20	6,866,101 - 6,885,103 (+)	NCBI

RefSeq Acc Id:

XM_039098706 ⟹ XP_038954634

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,867,834 - 6,884,055 (+)	NCBI
mRatBN7.2	20	6,866,101 - 6,882,374 (+)	NCBI

RefSeq Acc Id:

XM_039098707 ⟹ XP_038954635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,867,834 - 6,883,193 (+)	NCBI
mRatBN7.2	20	6,866,101 - 6,881,491 (+)	NCBI

RefSeq Acc Id:

XM_039098708 ⟹ XP_038954636

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,873,943 - 6,904,456 (+)	NCBI
mRatBN7.2	20	6,872,243 - 6,902,760 (+)	NCBI

RefSeq Acc Id:

XR_005497244

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,867,834 - 6,901,495 (+)	NCBI
mRatBN7.2	20	6,866,101 - 6,899,799 (+)	NCBI

RefSeq Acc Id:

XR_005497245

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	6,867,834 - 6,902,143 (+)	NCBI
mRatBN7.2	20	6,866,101 - 6,900,523 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101085	(Get FASTA)	NCBI Sequence Viewer
	XP_006256191	(Get FASTA)	NCBI Sequence Viewer
	XP_006256194	(Get FASTA)	NCBI Sequence Viewer
	XP_038954631	(Get FASTA)	NCBI Sequence Viewer
	XP_038954632	(Get FASTA)	NCBI Sequence Viewer
	XP_038954633	(Get FASTA)	NCBI Sequence Viewer
	XP_038954634	(Get FASTA)	NCBI Sequence Viewer
	XP_038954635	(Get FASTA)	NCBI Sequence Viewer
	XP_038954636	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL96939	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000041680
	ENSRNOP00000041680.4
	ENSRNOP00000075843
	ENSRNOP00000075843.1
	ENSRNOP00000075891.1
	ENSRNOP00000078876.1
	ENSRNOP00000079349.1
	ENSRNOP00000088316
	ENSRNOP00000088316.1
	ENSRNOP00000094497.1

RefSeq Acc Id:

NP_001101085 ⟸ NM_001107615

- UniProtKB:

D3ZMD3 (UniProtKB/TrEMBL), A0A0U1RRW8 (UniProtKB/TrEMBL), A6JJS3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRKPRRKSRQNAEGRRSPSPYSLKCSPTRETLTYAQAQRIVEVDMDGRLHRISIYDPLKIITED
ELTAQDITECNSNKENSEQPQFPAKSKKPSSKGKKKESCSKHAPGTSFHLPQPSFRVVDTGSQP
EAPPLPAAYYRYIEKPPEDLDAEVEYDMDEEDMAWLDMVNEKRRADGHSSVSADTFELLVDRLE
KESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLAVHQECYGVPYIPEGQWLC
RCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVCAIWIPEVCFANTVFLEPIEGIDSIPPAR
WKLTCYICKQKGLGAAIQCHKVNCYTAFHVTCAQRAGLFMKIEPMRETSLNGTIFTVRKTAYCE
AHSPSVATARRKGDSPRSLSEVGDEDGLKEGGGEEEQEEGEEEGQEGQGGVGSPLKGVSKKSKM
TSKQKIKKELEEAGRETPSITVPMVTVPQIPSYRLNKICSGLSFQRKNQFMQRLHNYWLLKRQA
RNGVPLIRRLHSHLQSQRNAEQREHDEKTSAVKEELKYWQKLRHDLERARLLIELIRKREKLKR
EQVKVQQAAMELELMPFTVLLRTTLDLLQEKDPAHIFAEPVSLSEVPDYLEFISKPMDFSTMRR
KLESHLYHTLEEFEEDFNLIVTNCMKYNAKDTIFHRAAVRLRDLGGAILRHARRQAENIGYDPE
RGTHLPESPKLEDFYRFSWEDVDNILIPENRAHLSPEAQLKELLEKLDLVSAMRSSGARTRRVR
MLRREINALRQKLAQPPPPQLLSLTKTVPNGELPAGSRGDAAGLEQTLQEEPEDEGDRDDSQLP
APPTLEPTGPAPSLSEQESPPDPPTLKPISDSKPSGRLPKPRKVDDEELLGDSALQLGSEPLQC
LLSDNGADRLPLTNPDSPPGTPLGNVGRRTSVLFKKAKNGVKLQRGPDGTLENGEDAPASPASM
EEEHCSRKRPRSQSCSDSEGERSPQQEEETGVTNGFGKHTESGSDSECSLGLSGGLAFEAGSGL
TPPKRSRGKPALSRVPFLEGVNGDSDHSGSGRSLLMPFEDRGDLEPLELVWAKCRGYPSYPALI
IDPKMPREGLLHNGVPIPVPPLDVLRLGEQKQAEAGERLFLVLFFDNKRTWQWLPRDKVLPLGV
EDTVDKLKMLEGRKTSIRKSVQVAYDRAMIHLSRVRGSHSFVTSSYL

hide sequence

RefSeq Acc Id:	XP_006256194 ⟸ XM_006256132
- Peptide Label:	isoform X4
- UniProtKB:	D3ZMD3 (UniProtKB/TrEMBL), A0A0U1RRW8 (UniProtKB/TrEMBL), A6JJS3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRKPRRKSRQNAEGRRSPSPYSLKCSPTRETLTYAQAQRIVEVDMDGRLHRISIYDPLKIITED ELTAQDITECNSNKENSEQPQFPAKSKKPSSKGKKKESCSKHAPGTSFHLPQPSFRVVDTGSQP EAPPLPAAYYRYIEKPPEDLDAEVEYDMDEEDMAWLDMVNEKRRADGHSSVSADTFELLVDRLE KESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLAVHQECYGVPYIPEGQWLC RCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVCAIWIPEVCFANTVFLEPIEGIDSIPPAR WKLTCYICKQKGLGAAIQCHKVNCYTAFHVTCAQRAGLFMKIEPMRETSLNGTIFTVRKTAYCE AHSPSVATARRKGDSPRSLSEVGDEDGLKEGGGEEEQEEGEEEGQEGQGGVGSPLKGVSKKSKM TSKQKIKKELEEAGRETPSITVPMVTVPQIPSYRLNKICSGLSFQRKNQFMQRLHNYWLLKRQA RNGVPLIRRLHSHLQSQRNAEQREHDEKTSAVKEELKYWQKLRHDLERARLLIELIRKREKLKR EQVKVQQAAMELELMPFTVLLRTTLDLLQEKDPAHIFAEPVSLSEVPDYLEFISKPMDFSTMRR KLESHLYHTLEEFEEDFNLIVTNCMKYNAKDTIFHRAAVRLRDLGGAILRHARRQAENIGYDPE RGTHLPESPKLEDFYRFSWEDVDNILIPENRAHLSPEAQLKELLEKLDLVSAMRSSGARTRRVR MLRREINALRQKLAQPPPPQLLSLTKTVPNGELPAGSRGDAAGLEQTLQEEPEDEGDRDDSQLP APPTLEPTGPAPSLSEQESPPDPPTLKPISDSKPSGRLPKPRKVDDEELLGDSALQLGSEPLQC LLSDNGADRLPLTNPDSPPGTPLGNVGRRTSVLFKKAKNGVKLQRGPDGTLENGEDAPASPASM EEEHCSRKRPRSQSCSDSEGERSPQQEEETGVTNGFGKHTESGSDSECSLGLSGGLAFEAGSGL TPPKRSRGKPALSRVPFLEGVNGDSDHSGSGRSLLMPFEDRGDLEPLELVWAKCRGYPSYPALI IDPKMPREGLLHNGVPIPVPPLDVLRLGEQKQAEAGERLFLVLFFDNKRTWQWLPRDKVLPLGV EDTVDKLKMLEGRKTSIRKSVQVAYDRAMIHLSRVRGSHSFVTSSYL hide sequence

RefSeq Acc Id:

XP_006256191 ⟸ XM_006256129

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGRGGDARALPWSEGGDEARESAREGAAKRGPPPAPAILFLPGPGSGAAKPRPPRALLLARPEQ
SSALKGPPLAHGFPLDGQAGRPISARISASLPSSPSPSFAGARFPCEKGSDFASVCGLSSSFPV
AMRKPRRKSRQNAEGRRSPSPYSLKCSPTRETLTYAQAQRIVEVDMDGRLHRISIYDPLKIITE
DELTAQDITECNSNKENSEQPQFPAKSKKPSSKGKKKESCSKHAPGTSFHLPQPSFRVVDTGSQ
PEAPPLPAAYYRYIEKPPEDLDAEVEYDMDEEDMAWLDMVNEKRRADGHSSVSADTFELLVDRL
EKESYLESRSSGAQQSLIDEDAFCCVCLDDECHNSNVILFCDICNLAVHQECYGVPYIPEGQWL
CRCCLQSPSRPVDCVLCPNKGGAFKQTSDGHWAHVVCAIWIPEVCFANTVFLEPIEGIDSIPPA
RWKLTCYICKQKGLGAAIQCHKVNCYTAFHVTCAQRAGLFMKIEPMRETSLNGTIFTVRKTAYC
EAHSPSVATARRKGDSPRSLSEVGDEDGLKEGGGEEEQEEGEEEGQEGQGGVGSPLKGVSKKSK
MTSKQKIKKELEEAGRETPSITVPMVTVPQIPSYRLNKICSGLSFQRKNQFMQRLHNYWLLKRQ
ARNGVPLIRRLHSHLQSQRNAEQREHDEKTSAVKEELKYWQKLRHDLERARLLIELIRKREKLK
REQVKVQQAAMELELMPFTVLLRTTLDLLQEKDPAHIFAEPVSLSEVPDYLEFISKPMDFSTMR
RKLESHLYHTLEEFEEDFNLIVTNCMKYNAKDTIFHRAAVRLRDLGGAILRHARRQAENIGYDP
ERGTHLPESPKLEDFYRFSWEDVDNILIPENRAHLSPEAQLKELLEKLDLVSAMRSSGARTRRV
RMLRREINALRQKLAQPPPPQLLSLTKTVPNGELPAGSRGDAAGLEQTLQEEPEDEGDRDDSQL
PAPPTLEPTGPAPSLSEQESPPDPPTLKPISDSKPSGRLPKPRKVDDEELLGDSALQLGSEPLQ
CLLSDNGADRLPLTNPDSPPGTPLGNVGRRTSVLFKKAKNGVKLQRGPDGTLENGEDAPASPAS
MEEEHCSRKRPRSQSCSDSEGERSPQQEEETGVTNGFGKHTESGSDSECSLGLSGGLAFEAGSG
LTPPKRSRGKPALSRVPFLEGVNGDSDHSGSGRSLLMPFEDRGDLEPLELVWAKCRGYPSYPAL
IIDPKMPREGLLHNGVPIPVPPLDVLRLGEQKQAEAGERLFLVLFFDNKRTWQWLPRDKVLPLG
VEDTVDKLKMLEGRKTSIRKSVQVAYDRAMIHLSRVRGSHSFVTSSYL

hide sequence

Ensembl Acc Id:

ENSRNOP00000075843 ⟸ ENSRNOT00000092629

Ensembl Acc Id:

ENSRNOP00000075891 ⟸ ENSRNOT00000092566

Ensembl Acc Id:

ENSRNOP00000041680 ⟸ ENSRNOT00000042143

RefSeq Acc Id:	XP_038954631 ⟸ XM_039098703
- Peptide Label:	isoform X2
- UniProtKB:	D3ZMD3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954632 ⟸ XM_039098704
- Peptide Label:	isoform X3
- UniProtKB:	D3ZMD3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954633 ⟸ XM_039098705
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038954634 ⟸ XM_039098706
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038954635 ⟸ XM_039098707
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038954636 ⟸ XM_039098708
- Peptide Label:	isoform X8

Ensembl Acc Id:

ENSRNOP00000079349 ⟸ ENSRNOT00000109033

Ensembl Acc Id:

ENSRNOP00000088316 ⟸ ENSRNOT00000112955

Ensembl Acc Id:

ENSRNOP00000094497 ⟸ ENSRNOT00000097855

Protein Domains

Bromo PHD-type PWWP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZMD3-F1-model_v2	AlphaFold	D3ZMD3	1-1199	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306868	AgrOrtholog
BioCyc Gene	G2FUF-4405	BioCyc
Ensembl Genes	ENSRNOG00000028641	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000042143	ENTREZGENE
	ENSRNOT00000042143.5	UniProtKB/TrEMBL
	ENSRNOT00000092463.2	UniProtKB/TrEMBL
	ENSRNOT00000092566.2	UniProtKB/TrEMBL
	ENSRNOT00000092629	ENTREZGENE
	ENSRNOT00000092629.2	UniProtKB/TrEMBL
	ENSRNOT00000097855.1	UniProtKB/TrEMBL
	ENSRNOT00000109033.1	UniProtKB/TrEMBL
	ENSRNOT00000112955	ENTREZGENE
	ENSRNOT00000112955.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.920.10	UniProtKB/TrEMBL
	2.30.30.140	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
InterPro	Bromodomain	UniProtKB/TrEMBL
	Bromodomain-like_sf	UniProtKB/TrEMBL
	Bromodomain_CS	UniProtKB/TrEMBL
	BRPF3_ePHD	UniProtKB/TrEMBL
	Enhancer_polycomb-like_N	UniProtKB/TrEMBL
	EPHD	UniProtKB/TrEMBL
	Histone_Mod_Regulator	UniProtKB/TrEMBL
	PWWP	UniProtKB/TrEMBL
	Zinc_finger_PHD-type_CS	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
KEGG Report	rno:309647	UniProtKB/TrEMBL
NCBI Gene	309647	ENTREZGENE
PANTHER	BROMODOMAIN AND PHD FINGER-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
	PHD FINGER PROTEINS	UniProtKB/TrEMBL
Pfam	Bromodomain	UniProtKB/TrEMBL
	EPL1	UniProtKB/TrEMBL
	PHD_2	UniProtKB/TrEMBL
	PWWP	UniProtKB/TrEMBL
	zf-HC5HC2H_2	UniProtKB/TrEMBL
PhenoGen	Brpf3	PhenoGen
PRINTS	BROMODOMAIN	UniProtKB/TrEMBL
PROSITE	BROMODOMAIN_1	UniProtKB/TrEMBL
	BROMODOMAIN_2	UniProtKB/TrEMBL
	EPHD	UniProtKB/TrEMBL
	PWWP	UniProtKB/TrEMBL
	ZF_PHD_1	UniProtKB/TrEMBL
	ZF_PHD_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000028641	RatGTEx
SMART	BROMO	UniProtKB/TrEMBL
	PHD	UniProtKB/TrEMBL
	PWWP	UniProtKB/TrEMBL
Superfamily-SCOP	Bromodomain	UniProtKB/TrEMBL
	FYVE_PHD_ZnF	UniProtKB/TrEMBL
	Tudor/PWWP/MBT	UniProtKB/TrEMBL
UniProt	A0A0U1RRW8	ENTREZGENE, UniProtKB/TrEMBL
	A0A0U1RS12_RAT	UniProtKB/TrEMBL
	A0A8I5ZMM1_RAT	UniProtKB/TrEMBL
	A0A8I6AAK8_RAT	UniProtKB/TrEMBL
	A0A8I6AL41_RAT	UniProtKB/TrEMBL
	A0A8I6G418_RAT	UniProtKB/TrEMBL
	A6JJS3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZMD3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Brpf3	bromodomain and PHD finger containing, 3	Brpf3_predicted	bromodomain and PHD finger containing, 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Brpf3_predicted	bromodomain and PHD finger containing, 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar