RT1-CE13 (RT1 class I, locus CE13) - Rat Genome Database
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Gene: RT1-CE13 (RT1 class I, locus CE13) Rattus norvegicus
Analyze
No known orthologs.
Symbol: RT1-CE13
Name: RT1 class I, locus CE13
RGD ID: 1359196
Description: PARTICIPATES IN allograft rejection pathway; antigen processing and presentation pathway; autoimmune thyroiditis pathway; ASSOCIATED WITH acute retinal necrosis syndrome (ortholog); alopecia (ortholog); ankylosing spondylitis (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: RT1 class I, CE13
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,314,984 - 3,318,037 (-)NCBI
Cytogenetic Map20p12NCBI


References

References - curated
1. Abbas M, etal., Invest Ophthalmol Vis Sci. 2009 Apr;50(4):1734-8. doi: 10.1167/iovs.08-2053. Epub 2008 Sep 29.
2. Altman EM, etal., Ann Allergy. 1994 Apr;72(4):307-16.
3. Bel Hadj Ali I, etal., Ann Hum Biol. 2012 May;39(3):190-4. doi: 10.3109/03014460.2012.671849. Epub 2012 Apr 4.
4. Biswas J, etal., Int Ophthalmol. 1997-1998;21(5):277-81.
5. Blom DJ, etal., Invest Ophthalmol Vis Sci. 1997 Aug;38(9):1865-72.
6. Brown MA, etal., Ann Rheum Dis. 1996 Apr;55(4):268-70.
7. Cheung YK, etal., Epilepsia. 2013 Jul;54(7):1307-14. doi: 10.1111/epi.12217. Epub 2013 May 20.
8. Choukri F, etal., Tissue Antigens. 2003 Jan;61(1):92-6.
9. Dabil H, etal., Hum Immunol. 2003 Oct;64(10):960-4.
10. Ermakova NA Vestn Oftalmol. 2003 Jan-Feb;119(1):31-3.
11. Flor-de-Lima F, etal., Acta Paediatr. 2013 Aug 29. doi: 10.1111/apa.12410.
12. Gul A, etal., Rheumatology (Oxford). 2001 Jun;40(6):668-72.
13. Hammer RE, etal., Cell. 1990 Nov 30;63(5):1099-112.
14. Holland GN, etal., Am J Ophthalmol. 1989 Oct 15;108(4):370-4.
15. Huang SM, etal., Tissue Antigens. 2003 Feb;61(2):154-8.
16. Hughes EH, etal., Tissue Antigens. 2005 Sep;66(3):195-9.
17. Kang EH, etal., Hum Immunol. 2013 Oct;74(10):1363-7. doi: 10.1016/j.humimm.2013.06.036. Epub 2013 Jul 2.
18. Kaniwa N, etal., Pharmacogenomics. 2008 Nov;9(11):1617-22. doi: 10.2217/14622416.9.11.1617.
19. Kaya TI, etal., Clin Exp Dermatol. 2002 Sep;27(6):498-501.
20. Keles B, etal., Otolaryngol Head Neck Surg. 2008 Oct;139(4):580-5. doi: 10.1016/j.otohns.2008.07.002.
21. Kontopoulos A, etal., J Heart Valve Dis. 1996 Sep;5(5):543-7.
22. Kulahli I, etal., Hear Res. 2005 May;203(1-2):28-31.
23. Li Y, etal., Int J Med Sci. 2013;10(2):164-70. doi: 10.7150/ijms.5158. Epub 2013 Jan 3.
24. Liu WH, etal., Zhonghua Nei Ke Za Zhi. 1991 Jul;30(7):395-8, 454.
25. Matsuki K, etal., Arch Otolaryngol Head Neck Surg. 1989 Jan;115(1):46-7.
26. Murphy B, etal., Transplantation. 1997 Jul 15;64(1):14-9.
27. OMIM Disease Annotation Pipeline
28. Orchard TR, etal., Gastroenterology. 2000 Feb;118(2):274-8.
29. Orchard TR, etal., Gastroenterology. 2002 Sep;123(3):714-8.
30. Pathanapitoon K, etal., Br J Ophthalmol. 2006 Dec;90(12):1448-50. Epub 2006 Aug 9.
31. Pipeline to import KEGG annotations from KEGG into RGD
32. Price P, etal., J Clin Virol. 2001 Oct;22(3):279-87.
33. Priem HA, etal., Am J Ophthalmol. 1988 Feb 15;105(2):182-5.
34. Raache R, etal., J Fr Ophtalmol. 2013 Mar;36(3):247-54. doi: 10.1016/j.jfo.2012.01.008. Epub 2012 Sep 14.
35. Ratanachaiyavong S, etal., Hum Immunol. 1993 Feb;36(2):99-111.
36. Razumova IIu, etal., Vestn Oftalmol. 2013 Mar-Apr;129(2):35-40.
37. RGD automated data pipeline
38. RGD automated import pipeline for gene-chemical interactions
39. Tandon N, etal., Clin Endocrinol (Oxf). 1990 Jul;33(1):21-6.
40. Thurau SR, etal., Immunol Lett. 1997 Jun 1;57(1-3):193-201.
41. Villegas Becerril E, etal., Cell Mol Immunol. 2009 Aug;6(4):303-7. doi: 10.1038/cmi.2009.40.
42. Wildner G, etal., Ann N Y Acad Sci. 2004 Dec;1029:416-21.
43. Yanagisawa H, etal., Am J Pathol. 1995 Oct;147(4):955-64.
44. Yeo SW, etal., Acta Otolaryngol. 2002 Dec;122(8):851-6.
Additional References at PubMed
PMID:29531166  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: NM_001008836   ⟹   NP_001008836
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2203,314,984 - 3,318,037 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001008836 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AVP72137 (Get FASTA)   NCBI Sequence Viewer  
  CAE84016 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001008836   ⟸   NM_001008836
- Peptide Label: precursor
- UniProtKB: Q6MG31 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
KEGG Report rno:414790 UniProtKB/TrEMBL
NCBI Gene 414790 ENTREZGENE
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PhenoGen RT1-CE13 PhenoGen
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A2P1NRY3_RAT UniProtKB/TrEMBL
  Q6MG31 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-09-15 RT1-CE13  RT1 class I, locus CE13  RT1-CE13  RT1 class I, CE13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RT1-CE13  RT1 class I, CE13      Symbol and Name updated 1559027 APPROVED
2005-07-29 RT1-CE13  RT1 class I, CE13      Symbol and Name status set to provisional 70820 PROVISIONAL