Ccdc138 (coiled-coil domain containing 138) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ccdc138 (coiled-coil domain containing 138) Rattus norvegicus
Analyze
Symbol: Ccdc138
Name: coiled-coil domain containing 138
RGD ID: 1566050
Description: Orthologous to human CCDC138 (coiled-coil domain containing 138); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aflatoxin B1.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 138; LOC499442; RGD1566050; similar to hypothetical protein FLJ32745
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22026,493,624 - 26,572,367 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2026,495,235 - 26,572,376 (+)Ensembl
Rnor_6.02028,076,784 - 28,158,053 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2028,078,500 - 28,157,071 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02029,897,919 - 29,975,893 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,181,926 - 37,269,631 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2027,943,945 - 28,023,299 (+)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ccdc138
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22026,493,624 - 26,572,367 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2026,495,235 - 26,572,376 (+)Ensembl
Rnor_6.02028,076,784 - 28,158,053 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2028,078,500 - 28,157,071 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02029,897,919 - 29,975,893 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,181,926 - 37,269,631 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2027,943,945 - 28,023,299 (+)NCBICelera
Cytogenetic Map20q11NCBI
CCDC138
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382108,786,750 - 108,885,485 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2108,786,757 - 108,885,477 (+)EnsemblGRCh38hg38GRCh38
GRCh372109,403,206 - 109,501,941 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362108,769,651 - 108,859,279 (+)NCBINCBI36hg18NCBI36
Celera2103,713,196 - 103,802,791 (+)NCBI
Cytogenetic Map2q13NCBI
HuRef2103,001,686 - 103,091,278 (+)NCBIHuRef
CHM1_12109,407,547 - 109,497,117 (+)NCBICHM1_1
T2T-CHM13v2.02109,247,356 - 109,346,048 (+)NCBI
Ccdc138
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391058,333,523 - 58,412,066 (+)NCBIGRCm39mm39
GRCm39 Ensembl1058,333,770 - 58,412,066 (+)Ensembl
GRCm381058,497,699 - 58,576,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1058,497,948 - 58,576,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,960,685 - 58,038,992 (+)NCBIGRCm37mm9NCBIm37
MGSCv361057,893,327 - 57,971,601 (+)NCBImm8
MGSCv361058,477,854 - 58,557,364 (+)NCBImm8
Cytogenetic Map10B4NCBI
Ccdc138
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547012,251,682 - 12,305,973 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547012,249,279 - 12,305,099 (+)NCBIChiLan1.0ChiLan1.0
CCDC138
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A110,041,114 - 110,128,383 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A110,041,000 - 110,128,234 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A95,030,440 - 95,126,627 (+)NCBIMhudiblu_PPA_v0panPan3
CCDC138
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11034,976,341 - 35,086,080 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1034,976,670 - 35,086,297 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1034,899,699 - 35,008,391 (-)NCBI
ROS_Cfam_1.01035,828,597 - 35,938,058 (-)NCBI
ROS_Cfam_1.0 Ensembl1035,828,608 - 35,938,126 (-)Ensembl
UMICH_Zoey_3.11035,558,076 - 35,667,578 (-)NCBI
UNSW_CanFamBas_1.01035,840,305 - 35,950,700 (-)NCBI
UU_Cfam_GSD_1.01036,031,906 - 36,142,309 (-)NCBI
Ccdc138
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,000,625 - 92,061,913 (-)NCBI
SpeTri2.0NW_004936829335,977 - 397,252 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC138
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl347,470,709 - 47,523,529 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1347,470,649 - 47,525,606 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,632,032 - 49,688,845 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC138
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11412,320,653 - 12,412,191 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1412,320,719 - 12,411,855 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660807,286,330 - 7,391,400 (-)NCBIVero_WHO_p1.0
Ccdc138
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474911,924,803 - 11,973,743 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474911,924,869 - 11,974,072 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH131887  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22026,493,947 - 26,494,097 (+)MAPPERmRatBN7.2
Rnor_6.02028,077,131 - 28,077,280NCBIRnor6.0
Rnor_5.02029,896,616 - 29,896,765UniSTSRnor5.0
RGSC_v3.42037,270,851 - 37,271,000UniSTSRGSC3.4
Celera2027,944,292 - 27,944,441UniSTS
Cytogenetic Map20q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
4889870Pur30Proteinuria QTL 30190.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:11
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000030005
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 25 21 30 4
Low 3 40 57 41 19 41 8 9 49 14 11 7 8
Below cutoff 3 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001053950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_574765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000030005   ⟹   ENSRNOP00000031531
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2026,495,235 - 26,572,376 (+)Ensembl
Rnor_6.0 Ensembl2028,078,500 - 28,157,071 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116849   ⟹   ENSRNOP00000081236
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2026,495,267 - 26,572,376 (+)Ensembl
RefSeq Acc Id: XM_006256400   ⟹   XP_006256462
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22026,493,624 - 26,572,367 (+)NCBI
Rnor_6.02028,078,500 - 28,158,053 (+)NCBI
Rnor_5.02029,897,919 - 29,975,893 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256401   ⟹   XP_006256463
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22026,496,710 - 26,572,367 (+)NCBI
Rnor_6.02028,080,881 - 28,158,053 (+)NCBI
Rnor_5.02029,897,919 - 29,975,893 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601799   ⟹   XP_017457288
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22026,493,624 - 26,572,367 (+)NCBI
Rnor_6.02028,078,504 - 28,158,053 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601800   ⟹   XP_017457289
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22026,493,624 - 26,572,367 (+)NCBI
Rnor_6.02028,079,799 - 28,158,053 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601801   ⟹   XP_017457290
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22026,496,656 - 26,572,367 (+)NCBI
Rnor_6.02028,086,928 - 28,158,053 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601802   ⟹   XP_017457291
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22026,512,897 - 26,572,367 (+)NCBI
Rnor_6.02028,098,121 - 28,158,053 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099228   ⟹   XP_038955156
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22026,493,624 - 26,572,367 (+)NCBI
RefSeq Acc Id: XM_574765   ⟹   XP_574765
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22026,493,624 - 26,572,367 (+)NCBI
Rnor_6.02028,076,784 - 28,158,053 (+)NCBI
Rnor_5.02029,897,919 - 29,975,893 (+)NCBI
RGSC_v3.42037,181,926 - 37,269,631 (-)RGD
Sequence:
RefSeq Acc Id: XR_005497585
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22026,493,624 - 26,571,957 (+)NCBI
RefSeq Acc Id: XR_005497586
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22026,493,624 - 26,543,012 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_574765   ⟸   XM_574765
- Peptide Label: isoform X1
- UniProtKB: D3ZGR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256462   ⟸   XM_006256400
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006256463   ⟸   XM_006256401
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017457288   ⟸   XM_017601799
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017457289   ⟸   XM_017601800
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017457290   ⟸   XM_017601801
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017457291   ⟸   XM_017601802
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000031531   ⟸   ENSRNOT00000030005
RefSeq Acc Id: XP_038955156   ⟸   XM_039099228
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000081236   ⟸   ENSRNOT00000116849

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZGR6-F1-model_v2 AlphaFold D3ZGR6 1-681 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701584
Promoter ID:EPDNEW_R12106
Type:multiple initiation site
Name:Ccdc138_1
Description:coiled-coil domain containing 138
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02028,078,485 - 28,078,545EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566050 AgrOrtholog
BioCyc Gene G2FUF-3784 BioCyc
Ensembl Genes ENSRNOG00000028581 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000031531 ENTREZGENE
  ENSRNOP00000031531.4 UniProtKB/TrEMBL
  ENSRNOP00000081236 ENTREZGENE
  ENSRNOP00000081236.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030005 ENTREZGENE
  ENSRNOT00000030005.5 UniProtKB/TrEMBL
  ENSRNOT00000116849 ENTREZGENE
  ENSRNOT00000116849.1 UniProtKB/TrEMBL
InterPro CCDC138 UniProtKB/TrEMBL
NCBI Gene 499442 ENTREZGENE
PANTHER PTHR34523 UniProtKB/TrEMBL
PhenoGen Ccdc138 PhenoGen
UniProt A0A8I5ZRI4_RAT UniProtKB/TrEMBL
  D3ZGR6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-12 Ccdc138  coiled-coil domain containing 138  RGD1566050  similar to hypothetical protein FLJ32745  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1566050  similar to hypothetical protein FLJ32745   RGD1566050_predicted  similar to hypothetical protein FLJ32745 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1566050_predicted  similar to hypothetical protein FLJ32745 (predicted)  LOC499442  similar to hypothetical protein FLJ32745  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499442  similar to hypothetical protein FLJ32745      Symbol and Name status set to provisional 70820 PROVISIONAL