Advanced Search (OLGA)

Gene: LOC102556392 (uncharacterized LOC102556392) Rattus norvegicus

Analyze

Symbol:

LOC102556392

Name:

uncharacterized LOC102556392

RGD ID:

7579095

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	13,162,172 - 13,213,941 (-)	NCBI		GRCr8
mRatBN7.2	20	13,169,138 - 13,215,233 (-)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	20	14,139,888 - 14,159,024 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	20	16,341,165 - 16,344,223 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	20	14,675,683 - 14,694,761 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC102556392
464 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8042410	29322208	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	4606607	17617956	Rat
70154	Insul2	Insulin level QTL 2	3.75		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	6691706	17489458	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8042410	17617956	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
9590092	Insglur9	Insulin/glucose ratio QTL 9	18.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	20	11757515	54435887	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26123605	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	4606607	17617956	Rat
631265	Iresp1	Immunoglobin response QTL1	8.3		blood anti-double stranded DNA antibody amount (VT:0004762)	serum anti-DNA antibody level (CMO:0001533)	20	9039719	13461775	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
7411652	Foco24	Food consumption QTL 24		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	11757515	54435887	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001834838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010061058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_343775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_362112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_005497383

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,176,399 - 13,207,591 (-)	NCBI
mRatBN7.2	20	13,179,228 - 13,208,741 (-)	NCBI

RefSeq Acc Id:

XR_005497384

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,189,506 - 13,207,591 (-)	NCBI
mRatBN7.2	20	13,195,409 - 13,208,741 (-)	NCBI

RefSeq Acc Id:

XR_005497385

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,162,172 - 13,207,591 (-)	NCBI
mRatBN7.2	20	13,169,138 - 13,208,741 (-)	NCBI

RefSeq Acc Id:

XR_005497386

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,196,260 - 13,207,744 (-)	NCBI
mRatBN7.2	20	13,195,409 - 13,208,741 (-)	NCBI

RefSeq Acc Id:

XR_005497387

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,196,260 - 13,209,836 (-)	NCBI
mRatBN7.2	20	13,195,409 - 13,210,400 (-)	NCBI

RefSeq Acc Id:

XR_005497388

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,196,260 - 13,211,164 (-)	NCBI
mRatBN7.2	20	13,195,409 - 13,210,947 (-)	NCBI

RefSeq Acc Id:

XR_005497389

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,162,172 - 13,213,941 (-)	NCBI
mRatBN7.2	20	13,195,409 - 13,214,496 (-)	NCBI

RefSeq Acc Id:

XR_010061058

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,196,260 - 13,209,813 (-)	NCBI

RefSeq Acc Id:

XR_362112

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	13,199,560 - 13,207,591 (-)	NCBI
mRatBN7.2	20	13,202,703 - 13,208,741 (-)	NCBI
Rnor_6.0	20	14,151,931 - 14,159,024 (-)	NCBI
Rnor_5.0	20	16,341,165 - 16,344,223 (-)	NCBI

Sequence:

show sequence

GAACTCTGCTTCAGTTCCTGCCTCCAGGTTCCTACGCAGACTTCCTGCCTTGACTTCCCTTAAT
GATGGACTGAAATGTTGAAATGTAAGCCAAATAAACACTTTGCTCTCCCAACTTGGATAGGATC
ATGCTATTTATTCAAACAACAGGGAAGCAAATTAGGGCAGGAATCCAAGGTTACCCTAGCAAGC
TGAAGGCTAGCCTGAGTTAATGGGACTGTGTTGAAAAACAAGGCTTAGGCAAGTAGTTCAGAGG
TACAGTTCTTGTCTGGCATGCTCAGAGCCCAAAGTCAATTCCTAGCACTGTGAGAAACAAAAAT
GAATTAACACAACAGCAGGTTTGCATGTTTGAGTCCCGCCTCAACTACCCTGTGGTATGAGCCT
GAGCTAGCCCCAGATTGTCTGTCATGGTATGGAAAGAGATTCCCTCAACTTTAGGCAATTTCTG
TTATAGTTAAAATATGTTAGATGTTGCACGTCGAGGGAATATTTTTCAAGCTTTAAAATGCCAC
AGACTGTTAACCTGTTTGTTAAGTAACACATTCATTGGCCCATCCACATAACTCATTGACAGTT
GTCTCCCAGTCAGATACTTGTGACTTGGAAAATCAAACTTAAGAACCTGGAAAGGTTGGTAAAT
TTCGAAGGCAGAACAAGAGTAAGAAGCGAGTTTTAGAATCAAAGGTGGTCAGCGTGCTGAGAGG
CATCTCAGGCTGAGGAAAGGCAGGTAATGTCAAGAAGGAGCAGAAAAGGCTTGGCCGGGGGTCA
GAGGCTTGAAGGGCATGGGAACCCACATGGTGTATTGCCCCACCTCTAGAGGAGAGAGAACGAA
CTACTTCTGTTCTTGAAGACTACAGGATAGTCCGACAACATTTTGATGGATAATGAACGAGGGA
GCAGGATTCTCACTCAGAAACCGGCCGTTATGGTCTCGTTGATGTCTACTGGAAAACTCACATC
TGTAAACCCTGAGCCCCAGCACGATGGCATTTCAATGACAGGGTCTAACGAAAGTAACTAAGGA
TGTACGCATTCATGTCCGACATGAAGAAAGCAGTTTGGACAAGCAAGGACTGTCTCTTTCATCA
AGGATCACCTCCGGGGTCCTCGAGAAGAGCAGCCGGTGCTCTTAACTGCTGAGCCGCCTCTCCA
ACCCTTGGACAACAAGACTTTTTAACCAAACTGGAGAAGAAACAGAGGGTCACAGAATGATTTT
ATTGATGCCAGACTTTGTCCATTGAGGGGGGATTCCATGTCCTCGGTGAATGAGGGATAGCTAC
AATCTCCATCAACTTCAAAGTCTGTGATCAACCATGGGGGCAGCGAGGAACACTTCTAAGTCCA
GTTCCCCTCACTCATCCTCCCTGAATGGCATAGAGCAATCCAAGCAGCCACCAGCCCATTGGGG
GTGTACTGTATAGAATCAAGCACCTGAATTCATGTCCATTAGATTTTACACTTGTGGGCAGAAA
GGACTCATAATCTGGGGGATAAAACATTTTATCCTGAGTGGGACAAAGTGGTACACACGTTTAA
TCCTGACACTCAGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTCAACGCCAACCTGGTCTACTT
AGCATGTGCCAAGACAGTCTGTGCTACGTAGTAAAGCCCTGTTTCAAAATGGGGGGAAGGGTGT
TATACCAATCTGCGATTGCAACTTTTGCGTCCCAAATACTCAAGTTGATACATTAAGAGTTATG
TGAGTGCTGGGAATTGTCAAGGGGACAACCTAGAAAAGGTTAAGTCTAGCAGATGGTCTTCCTG
GAGGTGGCCCACCATTTTTGGTATGGTCTGCAGTGGGTGAGCTCTGAAAGGCAAGGCCCCAAGA
GATTGTTTCTGGCAGCTGATATGCCTTTCCTGTTACTATTACATAGCCTAAGGATTCCTGAGCA
TTAGCCTACCCCATTGATCAGATTTTCCTGTAGATCAAAGATGAGCTTTCATGAATTAATGCTG
TTTAGATGAATTAATGATTTCATAGAATTCCTCGTTTGGTTTAAACCATTTTAGGAAGAAAGTT
TTCAAAGATGGTTTTAGTTATTTTGCTAGAAAGAGACAATAAAGTTAGAAGCAAGAATAGAACC
CCCCACCCACCCACCTATTGTAAGTAGTAAGTAAAGGCTGCATAATAAGAAATACAACGAGCTT
ACATAATTATGCTAAAAAGAGATATAGGCTTGGGACAAAGTTATGTTCAAGGAAAAACACTCAG
GTCCAAGGATGAAGCCACAGGTGTGCACTGTGATAAGGCAAGGCTATGTAAAAACTATTGCTTT
GAACTTATAATGAGCTTACAGTATGAAACACTGATTTGAACTTGTTATTGTTACCTTTCTGTAA
CTCCCCTTTTATGTAACATTTTATCTCTGAGGTATTTCTTTCTCATAGAGAACTTTTAGTCTAA
AGAGCTGTAAAAAGGCTGAAAGCAAAAAGAAGGGGGAGGGGGTGTAACTGGTATATGTGTTGTC
TGCAGAATGACTGCTTTCCTTTCTTTTCTCTCTGGTTCAAAAAGAGTCAACGAGCTCCAAGCCT
CTCACCTGGCTAGCTAGAGGCTTCTGGATGACAGAGAAAGGAGCACTAGCAATAAATCCTTTTT
TAAATTCCCCAGCGCTTATTTAAATATTAAGAGTTGAGTTTCTAAGCACGTGCTGATGCACAGA
ACAGTAACAAAGAGTTAAGTTTCTCCCGTGCTTATTCAAGCACAGAGAGTTAAAGAAAAAAAGA
AGCCAGCAGTTTTCAGCCACAGAATAATCAAGAGAGTGTTAAGTTTCCAAAAAGCTATCAGTCC
CCAGTACACTTAGAGAGAGTTACAAGGCCAGCAACCATCAATCTTTTCTCGTTCATCCAACTTT
GTGTTCCACCTCACCTCCATACCTCAAAAGGCTGGGGCAGGCTCCCAGCAGGGAATCCAACCTG
GGTCTGATTAACAACGATAACCCTCGACACACCCTAATCTTGAACCTAGTAATATGGAGCTGTG
AACTTGTCCTATAAACAGAAGGTTTATGTAAGAAGAACATTTGGAAATTTGGGGGTTGGAAGGG
AGACCAAGGAAATTTTGTTAGGAATAGACACTGAGAATGTCCCTGAAGGTTTTTGATAAACTGA
ACAAGGATATCAGGATACAAAGCCCCATTCTTTCCTACTAGACCGGACAGATTCCTGGAACTTG
TAAGATACCCCAAACCAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCG
CAAG

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-4126	BioCyc
NCBI Gene	LOC102556392	ENTREZGENE
PhenoGen	LOC102556392	PhenoGen
RNAcentral	URS0000CCEC9B	RNACentral
	URS0000CD051C	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-18	LOC102556392	uncharacterized LOC102556392			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message