Snord83 (Small nucleolar RNA SNORD83) - Rat Genome Database

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Gene: Snord83 (Small nucleolar RNA SNORD83) Rattus norvegicus
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Symbol: Snord83
Name: Small nucleolar RNA SNORD83
RGD ID: 41374192
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120099057
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,583,444 - 3,583,518 (-)NCBIGRCr8
mRatBN7.2203,578,766 - 3,578,840 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,578,766 - 3,578,840 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl204,812,351 - 4,812,425 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




Snord83
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,583,444 - 3,583,518 (-)NCBIGRCr8
mRatBN7.2203,578,766 - 3,578,840 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,578,766 - 3,578,840 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl204,812,351 - 4,812,425 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20p12NCBI
SNORD83
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381264,575,665 - 64,575,741 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1264,575,665 - 64,575,741 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map12q14.2NCBI
T2T-CHM13v2.01264,554,476 - 64,554,552 (+)NCBIT2T-CHM13v2.0
Gm25128
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,466,151 - 35,466,226 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,466,151 - 35,466,226 (+)EnsemblGRCm39 Ensembl
GRCm381735,247,175 - 35,247,250 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,247,175 - 35,247,250 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17B1NCBI
LOC119874344
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha121,174,307 - 1,174,383 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,183,094 - 1,183,170 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,183,094 - 1,183,170 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,041,896 - 1,041,972 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,109,873 - 1,109,949 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,176,465 - 1,176,541 (-)NCBIUU_Cfam_GSD_1.0

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1 to 10 of 21 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat

1 to 10 of 21 rows





RefSeq Transcripts XR_005497879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000078790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,578,766 - 3,578,840 (-)Ensembl
RefSeq Acc Id: XR_005497879
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,583,444 - 3,583,518 (-)NCBI
mRatBN7.2203,578,766 - 3,578,840 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-4666 BioCyc
Ensembl Genes ENSRNOG00000055027 Ensembl
NCBI Gene LOC120099057 ENTREZGENE
PhenoGen Snord83 PhenoGen
RatGTEx ENSRNOG00000055027 RatGTEx
RNAcentral URS00006BD204 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Snord83  Small nucleolar RNA SNORD83  LOC120099057  small nucleolar RNA SNORD83  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120099057  small nucleolar RNA SNORD83  SNORD83  Small nucleolar RNA SNORD83  Data merged from RGD:15009138 737654 PROVISIONAL
2021-01-27 LOC120099057  small nucleolar RNA SNORD83      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 SNORD83  Small nucleolar RNA SNORD83      Symbol and Name status set to provisional 45752 PROVISIONAL