SNORD83 (Small nucleolar RNA SNORD83) - Rat Genome Database

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Gene: SNORD83 (Small nucleolar RNA SNORD83) Homo sapiens
Analyze
Symbol: SNORD83
Name: Small nucleolar RNA SNORD83
RGD ID: 16552561
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AC078962.1
RGD Orthologs
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381264,575,665 - 64,575,741 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1264,575,665 - 64,575,741 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map12q14.2NCBI
T2T-CHM13v2.01264,554,476 - 64,554,552 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SNORD83
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381264,575,665 - 64,575,741 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1264,575,665 - 64,575,741 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map12q14.2NCBI
T2T-CHM13v2.01264,554,476 - 64,554,552 (+)NCBIT2T-CHM13v2.0
Gm25128
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,466,151 - 35,466,226 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,466,151 - 35,466,226 (+)EnsemblGRCm39 Ensembl
GRCm381735,247,175 - 35,247,250 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,247,175 - 35,247,250 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map17B1NCBI
Snord83
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,583,444 - 3,583,518 (-)NCBIGRCr8
mRatBN7.2203,578,766 - 3,578,840 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,578,766 - 3,578,840 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl204,812,351 - 4,812,425 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map20p12NCBI
LOC119874344
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha121,174,307 - 1,174,383 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,183,094 - 1,183,170 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,183,094 - 1,183,170 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,041,896 - 1,041,972 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,109,873 - 1,109,949 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,176,465 - 1,176,541 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:72
Interacting mature miRNAs:73
Transcripts:ENST00000411362
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system appendage
High
Medium
Low 6 13 2 1 22 1 12 1 3 2 11 3 2
Below cutoff 1 18 2 2 23 1 1 1 3 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000411362
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1264,575,665 - 64,575,741 (+)Ensembl
RefSeq Acc Id: XR_007063623
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381264,575,665 - 64,575,741 (+)NCBI
RefSeq Acc Id: XR_007083489
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01264,554,476 - 64,554,552 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC SNORD83 COSMIC
Ensembl Genes ENSG00000223294 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000411362 ENTREZGENE
GTEx ENSG00000223294 GTEx
Human Proteome Map SNORD83 Human Proteome Map
NCBI Gene LOC124903098 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 SNORD83  Small nucleolar RNA SNORD83  AC078962.1    Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC078962.1    SNORD83  Small nucleolar RNA SNORD83  Symbol and/or name change 19259462 PROVISIONAL