Ctnna3 (catenin alpha 3) - Rat Genome Database

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Gene: Ctnna3 (catenin alpha 3) Rattus norvegicus
Analyze
Symbol: Ctnna3
Name: catenin alpha 3
RGD ID: 1562230
Description: Predicted to enable beta-catenin binding activity. Predicted to be involved in bundle of His cell-Purkinje myocyte adhesion involved in cell communication; regulation of heart rate by cardiac conduction; and regulation of ventricular cardiac muscle cell action potential. Predicted to be located in adherens junction; fascia adherens; and lamellipodium. Human ortholog(s) of this gene implicated in arrhythmogenic right ventricular dysplasia 13. Orthologous to human CTNNA3 (catenin alpha 3); PARTICIPATES IN arrhythmogenic right ventricular cardiomyopathy pathway; endometrial cancer pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07044900.1; catenin (cadherin associated protein), alpha 3; catenin alpha-3; Catna3; LOC361839; MGC188744; rCG61001-like; RGD1559455; RGD1562230; similar to catenin alpha 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22023,614,469 - 25,200,026 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2023,623,560 - 25,199,978 (-)Ensembl
Rnor_6.02025,063,124 - 26,640,428 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2026,516,836 - 26,589,209 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02027,131,441 - 28,684,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42025,842,315 - 26,947,108 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2024,950,408 - 26,462,542 (-)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11590244   PMID:12477932   PMID:14657280   PMID:15632090   PMID:17535849   PMID:19129494   PMID:23136403   PMID:31505169  


Genomics

Comparative Map Data
Ctnna3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22023,614,469 - 25,200,026 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2023,623,560 - 25,199,978 (-)Ensembl
Rnor_6.02025,063,124 - 26,640,428 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2026,516,836 - 26,589,209 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02027,131,441 - 28,684,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42025,842,315 - 26,947,108 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2024,950,408 - 26,462,542 (-)NCBICelera
Cytogenetic Map20p11NCBI
CTNNA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381065,912,523 - 67,763,594 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1065,912,457 - 67,763,637 (-)EnsemblGRCh38hg38GRCh38
GRCh371067,672,281 - 69,455,953 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361067,349,937 - 69,125,933 (-)NCBINCBI36hg18NCBI36
Build 341067,349,937 - 69,125,933NCBI
Celera1060,952,569 - 62,730,826 (-)NCBI
Cytogenetic Map10q21.3NCBI
HuRef1061,677,649 - 63,454,766 (-)NCBIHuRef
CHM1_11067,961,493 - 69,737,768 (-)NCBICHM1_1
T2T-CHM13v2.01066,775,664 - 68,564,525 (-)NCBI
Ctnna3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391063,265,877 - 64,841,174 (+)NCBIGRCm39mm39
GRCm39 Ensembl1063,265,877 - 64,839,446 (+)Ensembl
GRCm381063,430,098 - 65,003,667 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1063,430,098 - 65,003,667 (+)EnsemblGRCm38mm10GRCm38
MGSCv371062,892,846 - 64,466,415 (+)NCBIGRCm37mm9NCBIm37
MGSCv361062,825,455 - 64,398,299 (+)NCBImm8
Celera1064,530,270 - 66,095,505 (+)NCBICelera
Cytogenetic Map10B4- B5.1NCBI
Ctnna3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542518,628,961 - 20,087,647 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542518,623,645 - 20,126,200 (-)NCBIChiLan1.0ChiLan1.0
CTNNA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11064,712,491 - 66,460,336 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1064,712,576 - 66,442,238 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01062,388,454 - 64,177,116 (-)NCBIMhudiblu_PPA_v0panPan3
CTNNA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1417,364,121 - 19,035,836 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl417,372,245 - 19,017,093 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha417,591,055 - 19,164,102 (-)NCBI
ROS_Cfam_1.0417,635,105 - 19,300,514 (-)NCBI
ROS_Cfam_1.0 Ensembl417,640,624 - 19,300,489 (-)Ensembl
UMICH_Zoey_3.1417,507,139 - 19,184,802 (-)NCBI
UNSW_CanFamBas_1.0417,734,430 - 19,402,955 (-)NCBI
UU_Cfam_GSD_1.0418,082,469 - 19,749,039 (-)NCBI
Ctnna3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721361,989,665 - 63,613,571 (+)NCBI
SpeTri2.0NW_00493652110,482,434 - 10,936,554 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTNNA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1469,195,961 - 70,938,204 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11469,195,231 - 70,974,543 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21475,079,730 - 76,379,603 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTNNA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1963,669,561 - 65,406,737 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604824,490,435 - 26,255,182 (+)NCBIVero_WHO_p1.0
Ctnna3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624754285,857 - 2,034,582 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624754285,469 - 2,182,218 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D20Rat13  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22024,030,597 - 24,030,713 (+)MAPPERmRatBN7.2
Rnor_6.02025,499,650 - 25,499,765NCBIRnor6.0
Rnor_5.02027,567,584 - 27,567,699UniSTSRnor5.0
Celera2025,363,389 - 25,363,504UniSTS
FHH x ACI Map2012.4099RGD
FHH x ACI Map2012.4099UniSTS
Cytogenetic Map20p11-q11UniSTS
D7Rat16  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27102,920,123 - 102,920,263 (+)MAPPERmRatBN7.2
Rnor_6.07112,204,378 - 112,204,517NCBIRnor6.0
Rnor_5.07112,143,411 - 112,143,550UniSTSRnor5.0
RGSC_v3.47108,647,237 - 108,647,376UniSTSRGSC3.4
RGSC_v3.47108,647,236 - 108,647,376RGDRGSC3.4
RGSC_v3.17108,681,467 - 108,681,606RGD
Celera2025,557,526 - 25,557,946UniSTS
RH 3.4 Map7709.6RGD
RH 3.4 Map7709.6UniSTS
RH 2.0 Map7607.2RGD
SHRSP x BN Map759.07RGD
FHH x ACI Map750.06RGD
Cytogenetic Map20p11-q11UniSTS
D20Rat7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22024,963,389 - 24,963,524 (+)MAPPERmRatBN7.2
Rnor_6.02026,447,820 - 26,447,954NCBIRnor6.0
Rnor_5.02028,510,783 - 28,510,917UniSTSRnor5.0
RGSC_v3.42026,064,461 - 26,064,596RGDRGSC3.4
RGSC_v3.42026,064,462 - 26,064,596UniSTSRGSC3.4
RGSC_v3.12026,078,261 - 26,078,396RGD
Celera2026,274,277 - 26,274,411UniSTS
SHRSP x BN Map2021.46UniSTS
SHRSP x BN Map2021.46RGD
FHH x ACI Map2012.4798RGD
Cytogenetic Map20p11-q11UniSTS
D20Rat68  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22023,682,687 - 23,682,918 (+)MAPPERmRatBN7.2
Rnor_6.02025,130,768 - 25,130,996NCBIRnor6.0
Rnor_5.02027,199,085 - 27,199,313UniSTSRnor5.0
RGSC_v3.42024,696,455 - 24,696,683UniSTSRGSC3.4
RGSC_v3.42024,696,455 - 24,696,683RGDRGSC3.4
RGSC_v3.12024,710,255 - 24,710,644RGD
Celera2025,018,877 - 25,019,105UniSTS
FHH x ACI Map2012.4099UniSTS
FHH x ACI Map2012.4099RGD
Cytogenetic Map20p11-q11UniSTS
D20Got110  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22024,976,452 - 24,976,574 (+)MAPPERmRatBN7.2
Rnor_6.02026,460,883 - 26,461,002NCBIRnor6.0
Rnor_5.02028,523,846 - 28,523,965UniSTSRnor5.0
RGSC_v3.42026,048,678 - 26,048,797UniSTSRGSC3.4
Celera2026,285,507 - 26,285,626UniSTS
Cytogenetic Map20p11-q11UniSTS
D20Got120  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22024,107,324 - 24,107,542 (+)MAPPERmRatBN7.2
Rnor_6.02025,576,793 - 25,577,010NCBIRnor6.0
Rnor_5.02027,644,418 - 27,644,635UniSTSRnor5.0
RGSC_v3.42026,932,614 - 26,932,831UniSTSRGSC3.4
Celera2025,440,192 - 25,440,409UniSTS
Cytogenetic Map20p11-q11UniSTS
D20Got115  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22024,824,834 - 24,825,076 (+)MAPPERmRatBN7.2
Rnor_6.02026,305,642 - 26,305,883NCBIRnor6.0
Rnor_5.02028,370,631 - 28,370,872UniSTSRnor5.0
RGSC_v3.42026,207,147 - 26,207,388UniSTSRGSC3.4
Celera2026,143,431 - 26,143,674UniSTS
Cytogenetic Map20p11-q11UniSTS
D20Got106  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22024,718,246 - 24,718,453 (+)MAPPERmRatBN7.2
Rnor_6.02026,192,405 - 26,192,609NCBIRnor6.0
Rnor_5.02028,262,782 - 28,262,986UniSTSRnor5.0
RGSC_v3.42026,315,542 - 26,315,746UniSTSRGSC3.4
Celera2026,040,904 - 26,041,108UniSTS
Cytogenetic Map20p11-q11UniSTS
D20Got127  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22024,901,881 - 24,902,007 (+)MAPPERmRatBN7.2
Rnor_6.02026,382,428 - 26,382,553NCBIRnor6.0
Rnor_5.02028,447,258 - 28,447,383UniSTSRnor5.0
RGSC_v3.42026,129,094 - 26,129,219UniSTSRGSC3.4
Celera2026,220,910 - 26,221,035UniSTS
Cytogenetic Map20p11-q11UniSTS
AU048277  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02025,825,996 - 25,826,074NCBIRnor6.0
Rnor_6.02025,825,996 - 25,826,100NCBIRnor6.0
Rnor_5.02027,896,042 - 27,896,146UniSTSRnor5.0
Rnor_5.02027,896,042 - 27,896,120UniSTSRnor5.0
RGSC_v3.42026,689,175 - 26,689,279UniSTSRGSC3.4
RGSC_v3.42026,689,201 - 26,689,279UniSTSRGSC3.4
Celera2025,681,867 - 25,681,945UniSTS
Celera2025,681,867 - 25,681,971UniSTS
Cytogenetic Map20p11-q11UniSTS
RH138113  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22023,623,750 - 23,623,910 (+)MAPPERmRatBN7.2
Rnor_6.02025,064,630 - 25,064,789NCBIRnor6.0
Rnor_5.02027,132,947 - 27,133,106UniSTSRnor5.0
RGSC_v3.42024,636,284 - 24,636,443UniSTSRGSC3.4
Celera2024,959,852 - 24,960,011UniSTS
Cytogenetic Map20p11-q11UniSTS
RH130615  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22025,053,750 - 25,053,967 (-)MAPPERmRatBN7.2
mRatBN7.22025,053,750 - 25,053,967 (+)MAPPERmRatBN7.2
mRatBN7.22196,192,321 - 196,192,538 (-)MAPPERmRatBN7.2
mRatBN7.22196,192,321 - 196,192,538 (+)MAPPERmRatBN7.2
Rnor_6.02211,346,729 - 211,346,945NCBIRnor6.0
Rnor_6.02026,536,809 - 26,537,025NCBIRnor6.0
Rnor_5.02230,816,524 - 230,816,740UniSTSRnor5.0
Rnor_5.02028,600,185 - 28,600,401UniSTSRnor5.0
RGSC_v3.42204,123,731 - 204,123,947UniSTSRGSC3.4
RGSC_v3.42025,957,978 - 25,958,194UniSTSRGSC3.4
Celera2026,355,641 - 26,355,857UniSTS
Celera2188,838,212 - 188,838,428UniSTS
RH 3.4 Map17356.3UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map20p11-q11UniSTS
RH144032  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22024,690,125 - 24,690,236 (+)MAPPERmRatBN7.2
Rnor_6.02026,164,113 - 26,164,223NCBIRnor6.0
Rnor_5.02028,234,258 - 28,234,368UniSTSRnor5.0
RGSC_v3.42026,343,330 - 26,343,440UniSTSRGSC3.4
Celera2026,013,623 - 26,013,733UniSTS
Cytogenetic Map20p11-q11UniSTS
AU047967  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22025,039,866 - 25,040,155 (+)MAPPERmRatBN7.2
Rnor_6.02026,522,625 - 26,522,913NCBIRnor6.0
Rnor_5.02028,586,001 - 28,586,289UniSTSRnor5.0
RGSC_v3.42025,972,443 - 25,972,731UniSTSRGSC3.4
Celera2026,340,187 - 26,340,453UniSTS
Cytogenetic Map20p11-q11UniSTS
RH139003  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22196,193,218 - 196,193,345 (+)MAPPERmRatBN7.2
mRatBN7.22025,052,943 - 25,053,070 (-)MAPPERmRatBN7.2
mRatBN7.22025,052,943 - 25,053,070 (+)MAPPERmRatBN7.2
mRatBN7.22196,193,218 - 196,193,345 (-)MAPPERmRatBN7.2
Rnor_6.02211,347,626 - 211,347,752NCBIRnor6.0
Rnor_6.02026,536,002 - 26,536,128NCBIRnor6.0
Rnor_5.02230,817,421 - 230,817,547UniSTSRnor5.0
Rnor_5.02028,599,378 - 28,599,504UniSTSRnor5.0
RGSC_v3.42025,958,875 - 25,959,001UniSTSRGSC3.4
RGSC_v3.42204,124,628 - 204,124,754UniSTSRGSC3.4
Celera2026,354,834 - 26,354,960UniSTS
RH 3.4 Map21395.3UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map20p11-q11UniSTS
RH140435  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22024,693,124 - 24,693,255 (+)MAPPERmRatBN7.2
Rnor_6.02026,167,112 - 26,167,242NCBIRnor6.0
Rnor_5.02028,237,257 - 28,237,387UniSTSRnor5.0
RGSC_v3.42026,340,311 - 26,340,441UniSTSRGSC3.4
Celera2026,016,622 - 26,016,752UniSTS
Cytogenetic Map20p11-q11UniSTS
AI013181  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22196,193,979 - 196,194,127 (-)MAPPERmRatBN7.2
mRatBN7.22196,193,979 - 196,194,127 (+)MAPPERmRatBN7.2
mRatBN7.22025,052,161 - 25,052,309 (-)MAPPERmRatBN7.2
mRatBN7.22025,052,161 - 25,052,309 (+)MAPPERmRatBN7.2
Rnor_6.02026,535,220 - 26,535,367NCBIRnor6.0
Rnor_6.02211,348,387 - 211,348,534NCBIRnor6.0
Rnor_5.02230,818,182 - 230,818,329UniSTSRnor5.0
Rnor_5.02028,598,596 - 28,598,743UniSTSRnor5.0
RGSC_v3.42204,125,389 - 204,125,536UniSTSRGSC3.4
RGSC_v3.42025,959,636 - 25,959,783UniSTSRGSC3.4
Celera2026,354,052 - 26,354,199UniSTS
Celera2188,839,452 - 188,839,599UniSTS
RH 3.4 Map21395.8UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map20p11-q11UniSTS
BM390539  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22196,194,358 - 196,194,518 (-)MAPPERmRatBN7.2
mRatBN7.22196,194,358 - 196,194,518 (+)MAPPERmRatBN7.2
mRatBN7.22025,051,770 - 25,051,930 (-)MAPPERmRatBN7.2
mRatBN7.22025,051,770 - 25,051,930 (+)MAPPERmRatBN7.2
Rnor_6.02026,534,829 - 26,534,988NCBIRnor6.0
Rnor_6.02211,348,766 - 211,348,925NCBIRnor6.0
Rnor_5.02230,818,561 - 230,818,720UniSTSRnor5.0
Rnor_5.02028,598,205 - 28,598,364UniSTSRnor5.0
RGSC_v3.42204,125,768 - 204,125,927UniSTSRGSC3.4
RGSC_v3.42025,960,015 - 25,960,174UniSTSRGSC3.4
Celera2026,353,661 - 26,353,820UniSTS
Celera2188,839,831 - 188,839,990UniSTS
RH 3.4 Map21409.0UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map20p11-q11UniSTS
AU049904  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22024,556,622 - 24,556,810 (+)MAPPERmRatBN7.2
Rnor_6.02026,031,411 - 26,031,598NCBIRnor6.0
Rnor_5.02028,101,556 - 28,101,743UniSTSRnor5.0
RGSC_v3.42026,477,670 - 26,477,857UniSTSRGSC3.4
Celera2025,881,098 - 25,881,285UniSTS
Cytogenetic Map20p11-q11UniSTS
Cytogenetic Map20p11UniSTS
UniSTS:485602  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22024,385,485 - 24,385,544 (+)MAPPERmRatBN7.2
mRatBN7.2354,309,254 - 54,309,840 (+)MAPPERmRatBN7.2
Rnor_6.0355,785,073 - 55,785,657NCBIRnor6.0
Rnor_6.02025,862,227 - 25,862,285NCBIRnor6.0
Rnor_5.0362,397,014 - 62,397,599UniSTSRnor5.0
Rnor_5.02027,932,273 - 27,932,331UniSTSRnor5.0
RGSC_v3.4351,686,764 - 51,687,349UniSTSRGSC3.4
Celera353,870,165 - 53,870,750UniSTS
Celera2025,718,227 - 25,718,285UniSTS
Cytogenetic Map20p11-q11UniSTS
Cytogenetic Map3q21UniSTS
RH124829  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera2025,487,230 - 25,487,363UniSTS
Celera168,091,643 - 68,091,781UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map20p11-q11UniSTS
Cytogenetic Map1q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
4889870Pur30Proteinuria QTL 30190.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:173
Count of miRNA genes:132
Interacting mature miRNAs:146
Transcripts:ENSRNOT00000049437, ENSRNOT00000057950
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 17 27 11 19 11 8 10 14 15 15 11 8
Low 26 30 30 30 1 60 20 26
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008772942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC166848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000049437   ⟹   ENSRNOP00000047382
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2025,034,080 - 25,108,461 (-)Ensembl
Rnor_6.0 Ensembl2026,516,836 - 26,589,209 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000057950   ⟹   ENSRNOP00000054759
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2023,623,560 - 24,805,292 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084660   ⟹   ENSRNOP00000070169
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2023,623,560 - 25,199,978 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099024   ⟹   ENSRNOP00000078455
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2023,623,560 - 25,159,891 (-)Ensembl
RefSeq Acc Id: XM_008772942   ⟹   XP_008771164
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,614,469 - 24,439,115 (-)NCBI
Rnor_6.02025,120,535 - 25,916,377 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772944   ⟹   XP_008771166
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,623,820 - 25,159,895 (-)NCBI
Rnor_6.02025,120,535 - 26,640,428 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772945   ⟹   XP_008771167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,623,820 - 25,139,402 (-)NCBI
Rnor_6.02025,063,124 - 26,620,157 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601852   ⟹   XP_017457341
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,623,820 - 24,805,730 (-)NCBI
Rnor_6.02025,120,535 - 26,286,540 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099277   ⟹   XP_038955205
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,614,469 - 25,200,018 (-)NCBI
RefSeq Acc Id: XM_039099279   ⟹   XP_038955207
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,623,820 - 24,788,003 (-)NCBI
RefSeq Acc Id: XM_039099280   ⟹   XP_038955208
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22024,258,528 - 25,200,026 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008771166   ⟸   XM_008772944
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008771167   ⟸   XM_008772945
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017457341   ⟸   XM_017601852
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008771164   ⟸   XM_008772942
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000047382   ⟸   ENSRNOT00000049437
RefSeq Acc Id: XP_038955205   ⟸   XM_039099277
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038955207   ⟸   XM_039099279
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038955208   ⟸   XM_039099280
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000070169   ⟸   ENSRNOT00000084660
RefSeq Acc Id: ENSRNOP00000078455   ⟸   ENSRNOT00000099024
RefSeq Acc Id: ENSRNOP00000054759   ⟸   ENSRNOT00000057950

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYN9-F1-model_v2 AlphaFold B2RYN9 1-154 view protein structure
AF-F1M4I1-F1-model_v2 AlphaFold F1M4I1 1-545 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562230 AgrOrtholog
BioCyc Gene G2FUF-3829 BioCyc
Ensembl Genes ENSRNOG00000000373 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000000378 Ensembl
Ensembl Protein ENSRNOP00000047382.3 UniProtKB/TrEMBL
  ENSRNOP00000054759 ENTREZGENE
  ENSRNOP00000054759.5 UniProtKB/TrEMBL
  ENSRNOP00000070169 ENTREZGENE
  ENSRNOP00000070169.2 UniProtKB/TrEMBL
  ENSRNOP00000078455 ENTREZGENE
  ENSRNOP00000078455.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049437.4 UniProtKB/TrEMBL
  ENSRNOT00000057950 ENTREZGENE
  ENSRNOT00000057950.5 UniProtKB/TrEMBL
  ENSRNOT00000084660 ENTREZGENE
  ENSRNOT00000084660.2 UniProtKB/TrEMBL
  ENSRNOT00000099024 ENTREZGENE
  ENSRNOT00000099024.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9035703 IMAGE-MGC_LOAD
InterPro Alpha-catenin/vinculin-like_sf UniProtKB/TrEMBL
  Alpha_catenin UniProtKB/TrEMBL
  CTNNA1/CTNNA3 UniProtKB/TrEMBL
  Vinculin/catenin UniProtKB/TrEMBL
MGC_CLONE MGC:188744 IMAGE-MGC_LOAD
NCBI Gene 361839 ENTREZGENE
PANTHER PTHR18914:SF24 UniProtKB/TrEMBL
Pfam Vinculin UniProtKB/TrEMBL
PhenoGen Ctnna3 PhenoGen
PRINTS ALPHACATENIN UniProtKB/TrEMBL
Superfamily-SCOP SSF47220 UniProtKB/TrEMBL
UniProt A0A0G2JX81_RAT UniProtKB/TrEMBL
  A0A8I5ZKV7_RAT UniProtKB/TrEMBL
  B2RYN9_RAT UniProtKB/TrEMBL
  F1M4I1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Ctnna3  catenin alpha 3  AABR07044900.1    Data Merged 737654 PROVISIONAL
2019-11-08 AABR07044900.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2015-11-25 Ctnna3  catenin alpha 3  Ctnna3  catenin (cadherin associated protein), alpha 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Ctnna3  catenin (cadherin associated protein), alpha 3  LOC100362857  rCG61001-like  Data Merged 1643240 APPROVED
2010-05-06 LOC100362857  rCG61001-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1562230  similar to catenin alpha 3   RGD1562230_predicted  similar to catenin alpha 3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562230_predicted  similar to catenin alpha 3 (predicted)  LOC361839  similar to catenin alpha 3  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361839  similar to catenin alpha 3      Symbol and Name status set to provisional 70820 PROVISIONAL