Ctnna3 (catenin alpha 3) - Rat Genome Database
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Gene: Ctnna3 (catenin alpha 3) Rattus norvegicus
Analyze
Symbol: Ctnna3
Name: catenin alpha 3
RGD ID: 1562230
Description: Predicted to have beta-catenin binding activity. Predicted to be involved in bundle of His cell-Purkinje myocyte adhesion involved in cell communication; regulation of heart rate by cardiac conduction; and regulation of ventricular cardiac muscle cell action potential. Predicted to localize to adherens junction; fascia adherens; and lamellipodium. Human ortholog(s) of this gene implicated in arrhythmogenic right ventricular dysplasia 13. Orthologous to human CTNNA3 (catenin alpha 3); PARTICIPATES IN arrhythmogenic right ventricular cardiomyopathy pathway; endometrial cancer pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: MODEL
Also known as: catenin (cadherin associated protein), alpha 3; catenin alpha-3; Catna3; LOC361839; MGC188744; rCG61001-like; RGD1559455; RGD1562230; similar to catenin alpha 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22023,614,469 - 25,200,026 (-)NCBI
Rnor_6.0 Ensembl2026,516,836 - 26,589,209 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02025,063,124 - 26,640,428 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02027,131,441 - 28,684,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42025,842,315 - 26,947,108 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2024,950,408 - 26,462,542 (-)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
adherens junction  (IBA,IEA,ISO)
cytoskeleton  (IEA)
cytosol  (IEA)
fascia adherens  (IBA,ISO)
lamellipodium  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:11590244   PMID:12477932   PMID:14657280   PMID:15632090   PMID:17535849   PMID:19129494   PMID:23136403   PMID:31505169  


Genomics

Comparative Map Data
Ctnna3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22023,614,469 - 25,200,026 (-)NCBI
Rnor_6.0 Ensembl2026,516,836 - 26,589,209 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02025,063,124 - 26,640,428 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02027,131,441 - 28,684,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42025,842,315 - 26,947,108 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2024,950,408 - 26,462,542 (-)NCBICelera
Cytogenetic Map20p11NCBI
CTNNA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1065,912,523 - 67,696,195 (-)EnsemblGRCh38hg38GRCh38
GRCh381065,912,523 - 67,696,217 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371067,672,281 - 69,455,953 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361067,349,937 - 69,125,933 (-)NCBINCBI36hg18NCBI36
Build 341067,349,937 - 69,125,933NCBI
Celera1060,952,569 - 62,730,826 (-)NCBI
Cytogenetic Map10q21.3NCBI
HuRef1061,677,649 - 63,454,766 (-)NCBIHuRef
CHM1_11067,954,044 - 69,737,768 (-)NCBICHM1_1
Ctnna3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391063,265,877 - 64,841,174 (+)NCBIGRCm39mm39
GRCm39 Ensembl1063,265,877 - 64,839,446 (+)Ensembl
GRCm381063,430,098 - 65,003,667 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1063,430,098 - 65,003,667 (+)EnsemblGRCm38mm10GRCm38
MGSCv371062,892,846 - 64,466,415 (+)NCBIGRCm37mm9NCBIm37
MGSCv361062,825,455 - 64,398,299 (+)NCBImm8
Celera1064,530,270 - 66,095,505 (+)NCBICelera
Cytogenetic Map10B4- B5.1NCBI
Ctnna3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542518,628,961 - 20,087,647 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542518,623,645 - 20,126,200 (-)NCBIChiLan1.0ChiLan1.0
CTNNA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11064,712,491 - 66,460,336 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1064,712,576 - 66,442,238 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01062,388,454 - 64,177,116 (-)NCBIMhudiblu_PPA_v0panPan3
CTNNA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl417,372,245 - 19,017,093 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1417,364,121 - 19,035,836 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ctnna3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493652110,482,434 - 10,936,554 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTNNA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1469,200,215 - 70,938,204 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11469,195,231 - 70,974,543 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21475,079,730 - 76,379,603 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTNNA3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1963,669,561 - 65,406,737 (+)NCBI
Ctnna3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624754285,469 - 2,182,218 (-)NCBI

Position Markers
D20Rat13  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02025,499,650 - 25,499,765NCBIRnor6.0
Rnor_5.02027,567,584 - 27,567,699UniSTSRnor5.0
Celera2025,363,389 - 25,363,504UniSTS
FHH x ACI Map2012.4099RGD
FHH x ACI Map2012.4099UniSTS
Cytogenetic Map20p11-q11UniSTS
D7Rat16  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.07112,204,378 - 112,204,517NCBIRnor6.0
Rnor_5.07112,143,411 - 112,143,550UniSTSRnor5.0
RGSC_v3.47108,647,236 - 108,647,376RGDRGSC3.4
RGSC_v3.47108,647,237 - 108,647,376UniSTSRGSC3.4
RGSC_v3.17108,681,467 - 108,681,606RGD
Celera2025,557,526 - 25,557,946UniSTS
RH 3.4 Map7709.6UniSTS
RH 3.4 Map7709.6RGD
RH 2.0 Map7607.2RGD
SHRSP x BN Map759.07RGD
FHH x ACI Map750.06RGD
Cytogenetic Map20p11-q11UniSTS
D20Rat7  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02026,447,820 - 26,447,954NCBIRnor6.0
Rnor_5.02028,510,783 - 28,510,917UniSTSRnor5.0
RGSC_v3.42026,064,462 - 26,064,596UniSTSRGSC3.4
RGSC_v3.42026,064,461 - 26,064,596RGDRGSC3.4
RGSC_v3.12026,078,261 - 26,078,396RGD
Celera2026,274,277 - 26,274,411UniSTS
SHRSP x BN Map2021.46UniSTS
SHRSP x BN Map2021.46RGD
FHH x ACI Map2012.4798RGD
Cytogenetic Map20p11-q11UniSTS
D20Rat68  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02025,130,768 - 25,130,996NCBIRnor6.0
Rnor_5.02027,199,085 - 27,199,313UniSTSRnor5.0
RGSC_v3.42024,696,455 - 24,696,683RGDRGSC3.4
RGSC_v3.42024,696,455 - 24,696,683UniSTSRGSC3.4
RGSC_v3.12024,710,255 - 24,710,644RGD
Celera2025,018,877 - 25,019,105UniSTS
FHH x ACI Map2012.4099RGD
FHH x ACI Map2012.4099UniSTS
Cytogenetic Map20p11-q11UniSTS
D20Got110  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02026,460,883 - 26,461,002NCBIRnor6.0
Rnor_5.02028,523,846 - 28,523,965UniSTSRnor5.0
RGSC_v3.42026,048,678 - 26,048,797UniSTSRGSC3.4
Celera2026,285,507 - 26,285,626UniSTS
Cytogenetic Map20p11-q11UniSTS
D20Got120  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02025,576,793 - 25,577,010NCBIRnor6.0
Rnor_5.02027,644,418 - 27,644,635UniSTSRnor5.0
RGSC_v3.42026,932,614 - 26,932,831UniSTSRGSC3.4
Celera2025,440,192 - 25,440,409UniSTS
Cytogenetic Map20p11-q11UniSTS
D20Got115  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02026,305,642 - 26,305,883NCBIRnor6.0
Rnor_5.02028,370,631 - 28,370,872UniSTSRnor5.0
RGSC_v3.42026,207,147 - 26,207,388UniSTSRGSC3.4
Celera2026,143,431 - 26,143,674UniSTS
Cytogenetic Map20p11-q11UniSTS
D20Got106  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02026,192,405 - 26,192,609NCBIRnor6.0
Rnor_5.02028,262,782 - 28,262,986UniSTSRnor5.0
RGSC_v3.42026,315,542 - 26,315,746UniSTSRGSC3.4
Celera2026,040,904 - 26,041,108UniSTS
Cytogenetic Map20p11-q11UniSTS
D20Got127  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02026,382,428 - 26,382,553NCBIRnor6.0
Rnor_5.02028,447,258 - 28,447,383UniSTSRnor5.0
RGSC_v3.42026,129,094 - 26,129,219UniSTSRGSC3.4
Celera2026,220,910 - 26,221,035UniSTS
Cytogenetic Map20p11-q11UniSTS
AU048277  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02025,825,996 - 25,826,074NCBIRnor6.0
Rnor_6.02025,825,996 - 25,826,100NCBIRnor6.0
Rnor_5.02027,896,042 - 27,896,146UniSTSRnor5.0
Rnor_5.02027,896,042 - 27,896,120UniSTSRnor5.0
RGSC_v3.42026,689,175 - 26,689,279UniSTSRGSC3.4
RGSC_v3.42026,689,201 - 26,689,279UniSTSRGSC3.4
Celera2025,681,867 - 25,681,945UniSTS
Celera2025,681,867 - 25,681,971UniSTS
Cytogenetic Map20p11-q11UniSTS
RH138113  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02025,064,630 - 25,064,789NCBIRnor6.0
Rnor_5.02027,132,947 - 27,133,106UniSTSRnor5.0
RGSC_v3.42024,636,284 - 24,636,443UniSTSRGSC3.4
Celera2024,959,852 - 24,960,011UniSTS
Cytogenetic Map20p11-q11UniSTS
RH130615  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02026,536,809 - 26,537,025NCBIRnor6.0
Rnor_6.02211,346,729 - 211,346,945NCBIRnor6.0
Rnor_5.02028,600,185 - 28,600,401UniSTSRnor5.0
Rnor_5.02230,816,524 - 230,816,740UniSTSRnor5.0
RGSC_v3.42204,123,731 - 204,123,947UniSTSRGSC3.4
RGSC_v3.42025,957,978 - 25,958,194UniSTSRGSC3.4
Celera2188,838,212 - 188,838,428UniSTS
Celera2026,355,641 - 26,355,857UniSTS
RH 3.4 Map17356.3UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map20p11-q11UniSTS
RH144032  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02026,164,113 - 26,164,223NCBIRnor6.0
Rnor_5.02028,234,258 - 28,234,368UniSTSRnor5.0
RGSC_v3.42026,343,330 - 26,343,440UniSTSRGSC3.4
Celera2026,013,623 - 26,013,733UniSTS
Cytogenetic Map20p11-q11UniSTS
AU047967  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02026,522,625 - 26,522,913NCBIRnor6.0
Rnor_5.02028,586,001 - 28,586,289UniSTSRnor5.0
RGSC_v3.42025,972,443 - 25,972,731UniSTSRGSC3.4
Celera2026,340,187 - 26,340,453UniSTS
Cytogenetic Map20p11-q11UniSTS
RH139003  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02211,347,626 - 211,347,752NCBIRnor6.0
Rnor_6.02026,536,002 - 26,536,128NCBIRnor6.0
Rnor_5.02028,599,378 - 28,599,504UniSTSRnor5.0
Rnor_5.02230,817,421 - 230,817,547UniSTSRnor5.0
RGSC_v3.42204,124,628 - 204,124,754UniSTSRGSC3.4
RGSC_v3.42025,958,875 - 25,959,001UniSTSRGSC3.4
Celera2026,354,834 - 26,354,960UniSTS
RH 3.4 Map21395.3UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map20p11-q11UniSTS
RH140435  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02026,167,112 - 26,167,242NCBIRnor6.0
Rnor_5.02028,237,257 - 28,237,387UniSTSRnor5.0
RGSC_v3.42026,340,311 - 26,340,441UniSTSRGSC3.4
Celera2026,016,622 - 26,016,752UniSTS
Cytogenetic Map20p11-q11UniSTS
AI013181  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02211,348,387 - 211,348,534NCBIRnor6.0
Rnor_6.02026,535,220 - 26,535,367NCBIRnor6.0
Rnor_5.02028,598,596 - 28,598,743UniSTSRnor5.0
Rnor_5.02230,818,182 - 230,818,329UniSTSRnor5.0
RGSC_v3.42204,125,389 - 204,125,536UniSTSRGSC3.4
RGSC_v3.42025,959,636 - 25,959,783UniSTSRGSC3.4
Celera2188,839,452 - 188,839,599UniSTS
Celera2026,354,052 - 26,354,199UniSTS
RH 3.4 Map21395.8UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map20p11-q11UniSTS
BM390539  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02211,348,766 - 211,348,925NCBIRnor6.0
Rnor_6.02026,534,829 - 26,534,988NCBIRnor6.0
Rnor_5.02028,598,205 - 28,598,364UniSTSRnor5.0
Rnor_5.02230,818,561 - 230,818,720UniSTSRnor5.0
RGSC_v3.42204,125,768 - 204,125,927UniSTSRGSC3.4
RGSC_v3.42025,960,015 - 25,960,174UniSTSRGSC3.4
Celera2188,839,831 - 188,839,990UniSTS
Celera2026,353,661 - 26,353,820UniSTS
RH 3.4 Map21409.0UniSTS
Cytogenetic Map2q34UniSTS
Cytogenetic Map20p11-q11UniSTS
AU049904  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02026,031,411 - 26,031,598NCBIRnor6.0
Rnor_5.02028,101,556 - 28,101,743UniSTSRnor5.0
RGSC_v3.42026,477,670 - 26,477,857UniSTSRGSC3.4
Celera2025,881,098 - 25,881,285UniSTS
Cytogenetic Map20p11-q11UniSTS
Cytogenetic Map20p11UniSTS
UniSTS:485602  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02025,862,227 - 25,862,285NCBIRnor6.0
Rnor_6.0355,785,073 - 55,785,657NCBIRnor6.0
Rnor_5.02027,932,273 - 27,932,331UniSTSRnor5.0
Rnor_5.0362,397,014 - 62,397,599UniSTSRnor5.0
RGSC_v3.4351,686,764 - 51,687,349UniSTSRGSC3.4
Celera353,870,165 - 53,870,750UniSTS
Celera2025,718,227 - 25,718,285UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map20p11-q11UniSTS
RH124829  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera2025,487,230 - 25,487,363UniSTS
Celera168,091,643 - 68,091,781UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map20p11-q11UniSTS
Cytogenetic Map1q12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125653396Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20126305996Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20126305996Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20127357423Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20128375393Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20128375393Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20128375393Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20128375393Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20128375393Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20133300419Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20137550487Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20137550487Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20201865447018654Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20299970747999707Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20340211127968216Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)20410895649108956Rat
4889870Pur30Proteinuria QTL 30190.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20865434130991290Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201383430956205956Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201383430956205956Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201782709656205956Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201887215049108956Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202085847056205956Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202660884356205956Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202660884356205956Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202660884356205956Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:173
Count of miRNA genes:132
Interacting mature miRNAs:146
Transcripts:ENSRNOT00000049437, ENSRNOT00000057950
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 17 27 11 19 11 8 10 14 15 15 11 8
Low 26 30 30 30 1 60 20 26
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000049437   ⟹   ENSRNOP00000047382
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2026,516,836 - 26,589,209 (-)Ensembl
RefSeq Acc Id: XM_008772942   ⟹   XP_008771164
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,614,469 - 24,439,115 (-)NCBI
Rnor_6.02025,120,535 - 25,916,377 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772944   ⟹   XP_008771166
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,623,820 - 25,159,895 (-)NCBI
Rnor_6.02025,120,535 - 26,640,428 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008772945   ⟹   XP_008771167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,623,820 - 25,139,402 (-)NCBI
Rnor_6.02025,063,124 - 26,620,157 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774945   ⟹   XP_008773167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2024,950,408 - 25,772,403 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774947   ⟹   XP_008773169
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2024,950,408 - 26,462,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008774948   ⟹   XP_008773170
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2024,950,408 - 26,442,033 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017588001   ⟹   XP_017443490
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2024,950,408 - 26,124,607 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017588002   ⟹   XP_017443491
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2024,950,408 - 25,683,914 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601852   ⟹   XP_017457341
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,623,820 - 24,805,730 (-)NCBI
Rnor_6.02025,120,535 - 26,286,540 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601853   ⟹   XP_017457342
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02025,120,535 - 25,828,041 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099277   ⟹   XP_038955205
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,614,469 - 25,200,018 (-)NCBI
RefSeq Acc Id: XM_039099279   ⟹   XP_038955207
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22023,623,820 - 24,788,003 (-)NCBI
RefSeq Acc Id: XM_039099280   ⟹   XP_038955208
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22024,258,528 - 25,200,026 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008773169   ⟸   XM_008774947
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008773170   ⟸   XM_008774948
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008771166   ⟸   XM_008772944
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008771167   ⟸   XM_008772945
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017443490   ⟸   XM_017588001
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008773167   ⟸   XM_008774945
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017443491   ⟸   XM_017588002
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017457341   ⟸   XM_017601852
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008771164   ⟸   XM_008772942
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017457342   ⟸   XM_017601853
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000047382   ⟸   ENSRNOT00000049437
RefSeq Acc Id: XP_038955205   ⟸   XM_039099277
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038955207   ⟸   XM_039099279
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038955208   ⟸   XM_039099280
- Peptide Label: isoform X6

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562230 AgrOrtholog
Ensembl Genes ENSRNOG00000000378 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000047382 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049437 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9035703 IMAGE-MGC_LOAD
InterPro Alpha-catenin/vinculin-like_sf UniProtKB/TrEMBL
  Alpha_catenin UniProtKB/TrEMBL
  CTNNA1/CTNNA3 UniProtKB/TrEMBL
  Vinculin/catenin UniProtKB/TrEMBL
MGC_CLONE MGC:188744 IMAGE-MGC_LOAD
NCBI Gene 361839 ENTREZGENE
PANTHER PTHR18914:SF24 UniProtKB/TrEMBL
Pfam Vinculin UniProtKB/TrEMBL
PhenoGen Ctnna3 PhenoGen
PRINTS ALPHACATENIN UniProtKB/TrEMBL
Superfamily-SCOP SSF47220 UniProtKB/TrEMBL
UniProt B2RYN9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Ctnna3  catenin alpha 3  Ctnna3  catenin (cadherin associated protein), alpha 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Ctnna3  catenin (cadherin associated protein), alpha 3  LOC100362857  rCG61001-like  Data Merged 1643240 APPROVED
2010-05-06 LOC100362857  rCG61001-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1562230  similar to catenin alpha 3   RGD1562230_predicted  similar to catenin alpha 3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562230_predicted  similar to catenin alpha 3 (predicted)  LOC361839  similar to catenin alpha 3  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361839  similar to catenin alpha 3      Symbol and Name status set to provisional 70820 PROVISIONAL